Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08395

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,769,920	-				-0.6
1,769,978	-				-0.7
1,770,018	+				+0.0
1,770,126	+		DZA65_RS08390	0.19	+0.8
1,770,126	+		DZA65_RS08390	0.19	+0.2
1,770,126	+		DZA65_RS08390	0.19	-1.6
1,770,127	-		DZA65_RS08390	0.19	-0.2
1,770,127	-		DZA65_RS08390	0.19	-0.3
1,770,183	-		DZA65_RS08390	0.25	+1.8
1,770,215	+		DZA65_RS08390	0.29	-0.4
1,770,215	+		DZA65_RS08390	0.29	+0.6
1,770,215	+		DZA65_RS08390	0.29	+0.2
1,770,215	+		DZA65_RS08390	0.29	-1.4
1,770,215	+		DZA65_RS08390	0.29	+1.9
1,770,215	+		DZA65_RS08390	0.29	-1.2
1,770,216	-		DZA65_RS08390	0.29	+0.9
1,770,216	-		DZA65_RS08390	0.29	-0.0
1,770,216	-		DZA65_RS08390	0.29	+0.1
1,770,216	-		DZA65_RS08390	0.29	+1.6
1,770,353	+		DZA65_RS08390	0.43	-0.8
1,770,353	+		DZA65_RS08390	0.43	+0.6
1,770,354	-		DZA65_RS08390	0.43	+1.2
1,770,536	-		DZA65_RS08390	0.61	-0.2
1,770,536	-		DZA65_RS08390	0.61	+0.5
1,770,591	+		DZA65_RS08390	0.67	-1.5
1,770,591	+		DZA65_RS08390	0.67	+0.7
1,770,591	+		DZA65_RS08390	0.67	-2.7
1,770,591	+		DZA65_RS08390	0.67	+0.4
1,770,591	+		DZA65_RS08390	0.67	+0.4
1,770,591	+		DZA65_RS08390	0.67	+0.2
1,770,591	+		DZA65_RS08390	0.67	+0.2
1,770,591	+		DZA65_RS08390	0.67	+0.7
1,770,591	+		DZA65_RS08390	0.67	+2.0
1,770,592	-		DZA65_RS08390	0.67	-1.1
1,770,592	-		DZA65_RS08390	0.67	+0.9
1,770,592	-		DZA65_RS08390	0.67	-0.8
1,770,592	-		DZA65_RS08390	0.67	-1.9
1,770,643	+		DZA65_RS08390	0.72	-0.3
1,770,643	+		DZA65_RS08390	0.72	-0.6
1,770,643	+		DZA65_RS08390	0.72	+1.0
1,770,643	+		DZA65_RS08390	0.72	+0.2
1,770,643	+		DZA65_RS08390	0.72	+0.4
1,770,643	+		DZA65_RS08390	0.72	-0.8
1,770,643	+		DZA65_RS08390	0.72	+2.3
1,770,643	+		DZA65_RS08390	0.72	-0.7
1,770,644	-				-0.6
1,770,644	-		DZA65_RS08390	0.73	+0.8
1,770,644	-		DZA65_RS08390	0.73	+0.1
1,770,644	-		DZA65_RS08390	0.73	-0.3
1,770,664	+		DZA65_RS08390	0.75	-1.1
1,770,677	+		DZA65_RS08390	0.76	-0.2
1,770,678	-		DZA65_RS08390	0.76	+0.6
1,770,738	+		DZA65_RS08390	0.82	+0.4
1,770,738	+		DZA65_RS08390	0.82	+0.2
1,770,739	-		DZA65_RS08390	0.82	-1.7
1,770,739	-		DZA65_RS08390	0.82	-0.2
1,770,739	-		DZA65_RS08390	0.82	+0.3
1,770,810	+		DZA65_RS08390	0.90	-1.2
1,770,811	-		DZA65_RS08390	0.90	-1.6
1,770,867	+				-1.0
1,770,867	+				+1.0
1,770,868	-				+1.3
1,770,935	-				+0.4
1,770,976	+				-1.0
1,770,977	-				-1.0
1,770,977	-				-1.4
1,770,977	-				+0.6
1,770,977	-				-0.1
1,770,977	-				-1.9
1,770,977	-				+1.2
1,771,152	+		DZA65_RS08395	0.26	-0.0
1,771,152	+		DZA65_RS08395	0.26	-0.3
1,771,157	+		DZA65_RS08395	0.27	-0.4
1,771,157	+		DZA65_RS08395	0.27	+0.3
1,771,157	+		DZA65_RS08395	0.27	-0.2
1,771,157	+		DZA65_RS08395	0.27	-0.4
1,771,158	-		DZA65_RS08395	0.27	-0.4
1,771,158	-		DZA65_RS08395	0.27	+0.3
1,771,158	-		DZA65_RS08395	0.27	-0.2
1,771,209	-		DZA65_RS08395	0.33	-1.0
1,771,330	+		DZA65_RS08395	0.46	+1.5
1,771,331	-		DZA65_RS08395	0.46	-1.9
1,771,362	+		DZA65_RS08395	0.49	-0.2
1,771,362	+		DZA65_RS08395	0.49	+0.2
1,771,363	-		DZA65_RS08395	0.49	+1.8
1,771,366	+		DZA65_RS08395	0.50	+1.6
1,771,366	+		DZA65_RS08395	0.50	+0.8
1,771,366	+		DZA65_RS08395	0.50	+0.4
1,771,367	-		DZA65_RS08395	0.50	+0.8
1,771,367	-		DZA65_RS08395	0.50	+1.2
1,771,367	-		DZA65_RS08395	0.50	+0.2
1,771,414	+		DZA65_RS08395	0.55	-1.0
1,771,445	+		DZA65_RS08395	0.58	+1.2
1,771,445	+		DZA65_RS08395	0.58	-3.4
1,771,449	-		DZA65_RS08395	0.59	-1.2
1,771,449	-		DZA65_RS08395	0.59	-2.3
1,771,496	+		DZA65_RS08395	0.64	+0.2
1,771,496	+		DZA65_RS08395	0.64	+0.4
1,771,496	+		DZA65_RS08395	0.64	-0.7
1,771,496	+		DZA65_RS08395	0.64	+1.0
1,771,496	+		DZA65_RS08395	0.64	-1.5
1,771,497	-		DZA65_RS08395	0.64	+0.1
1,771,497	-		DZA65_RS08395	0.64	+1.2
1,771,497	-		DZA65_RS08395	0.64	+0.4
1,771,497	-		DZA65_RS08395	0.64	+0.4
1,771,497	-		DZA65_RS08395	0.64	+0.0
1,771,497	-		DZA65_RS08395	0.64	-0.9
1,771,497	-		DZA65_RS08395	0.64	-1.0
1,771,497	-		DZA65_RS08395	0.64	+0.2
1,771,600	+		DZA65_RS08395	0.75	-0.4
1,771,600	+				+0.4
1,771,607	+		DZA65_RS08395	0.76	+1.0
1,771,703	+		DZA65_RS08395	0.86	+2.0
1,771,703	+		DZA65_RS08395	0.86	+1.0
1,771,704	-		DZA65_RS08395	0.86	-1.6
1,771,811	-				+0.2
1,771,811	-				+0.1
1,771,906	-				-0.1
1,771,996	+				+0.4
1,771,996	+				+0.9
1,771,996	+				-0.4
1,771,997	-				+0.4
1,772,030	-		DZA65_RS08400	0.11	+0.2
1,772,144	-		DZA65_RS08400	0.17	+0.9
1,772,152	-		DZA65_RS08400	0.18	-0.2
1,772,250	+		DZA65_RS08400	0.23	-0.1
1,772,286	-		DZA65_RS08400	0.25	+0.0
1,772,509	+		DZA65_RS08400	0.38	+0.2
1,772,509	+		DZA65_RS08400	0.38	+0.8
1,772,509	+		DZA65_RS08400	0.38	-0.6
1,772,510	-		DZA65_RS08400	0.38	+0.2
1,772,519	+		DZA65_RS08400	0.38	-1.2
1,772,519	+		DZA65_RS08400	0.38	+1.9
1,772,519	+		DZA65_RS08400	0.38	-0.3
1,772,519	+		DZA65_RS08400	0.38	-0.3
1,772,519	+		DZA65_RS08400	0.38	-0.8
1,772,519	+		DZA65_RS08400	0.38	+0.1
1,772,519	+		DZA65_RS08400	0.38	-0.9
1,772,519	+		DZA65_RS08400	0.38	-0.2
1,772,520	-		DZA65_RS08400	0.38	-1.8
1,772,520	-		DZA65_RS08400	0.38	-0.1
1,772,520	-		DZA65_RS08400	0.38	+0.7
1,772,520	-		DZA65_RS08400	0.38	-0.6
1,772,520	-				-0.6
1,772,794	-		DZA65_RS08400	0.54	-0.2
1,772,794	-		DZA65_RS08400	0.54	+0.1