Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07875

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,642,238	+		DZA65_RS07870	0.51	-0.8
1,642,238	+		DZA65_RS07870	0.51	+0.7
1,642,239	-		DZA65_RS07870	0.51	-1.7
1,642,242	-		DZA65_RS07870	0.51	-1.1
1,642,242	-		DZA65_RS07870	0.51	-0.6
1,642,242	-		DZA65_RS07870	0.51	+2.4
1,642,336	+		DZA65_RS07870	0.61	+0.0
1,642,336	+		DZA65_RS07870	0.61	+0.8
1,642,336	+		DZA65_RS07870	0.61	+0.1
1,642,336	+		DZA65_RS07870	0.61	-0.6
1,642,337	-		DZA65_RS07870	0.61	+0.2
1,642,337	-		DZA65_RS07870	0.61	-0.9
1,642,337	-		DZA65_RS07870	0.61	+0.5
1,642,337	-		DZA65_RS07870	0.61	-0.9
1,642,337	-		DZA65_RS07870	0.61	-1.5
1,642,408	+		DZA65_RS07870	0.69	+0.9
1,642,448	+		DZA65_RS07870	0.73	+0.8
1,642,448	+		DZA65_RS07870	0.73	-0.2
1,642,598	+		DZA65_RS07870	0.89	-2.5
1,642,598	+		DZA65_RS07870	0.89	+0.5
1,642,598	+		DZA65_RS07870	0.89	+0.1
1,642,599	-		DZA65_RS07870	0.89	+0.7
1,642,599	-		DZA65_RS07870	0.89	-0.9
1,642,695	-				+0.1
1,642,728	+				+0.1
1,642,729	-				-1.1
1,642,729	-				+0.9
1,642,877	+				-0.9
1,642,878	-				-0.5
1,642,978	+				-1.9
1,643,012	+				+0.1
1,643,012	+				+1.0
1,643,012	+				+0.1
1,643,012	+				-2.1
1,643,012	+				-1.1
1,643,012	+				+0.5
1,643,012	+				+0.9
1,643,013	-				-0.1
1,643,013	-				+0.5
1,643,013	-				+0.5
1,643,013	-				+0.3
1,643,013	-				-0.5
1,643,013	-				-2.1
1,643,013	-				+0.4
1,643,065	+				-0.2
1,643,066	-				+0.0
1,643,113	+				-1.9
1,643,113	+				-0.3
1,643,113	+				+0.7
1,643,114	-				-0.2
1,643,114	-				+0.2
1,643,128	-				+0.3
1,643,157	+				+0.5
1,643,196	-				+0.1
1,643,253	+				-0.1
1,643,254	-				+0.5
1,643,304	+		DZA65_RS07875	0.11	+0.4
1,643,316	+		DZA65_RS07875	0.12	+0.1
1,643,341	-		DZA65_RS07875	0.14	+0.1
1,643,341	-		DZA65_RS07875	0.14	-0.3
1,643,420	-		DZA65_RS07875	0.20	-0.6
1,643,430	+		DZA65_RS07875	0.20	+1.1
1,643,430	+		DZA65_RS07875	0.20	+1.0
1,643,430	+		DZA65_RS07875	0.20	+1.2
1,643,431	-		DZA65_RS07875	0.21	-0.5
1,643,431	-		DZA65_RS07875	0.21	-1.1
1,643,433	+		DZA65_RS07875	0.21	+0.2
1,643,460	+		DZA65_RS07875	0.23	-1.3
1,643,461	-		DZA65_RS07875	0.23	-3.0
1,643,499	+		DZA65_RS07875	0.26	+2.8
1,643,499	+		DZA65_RS07875	0.26	+1.5
1,643,499	+		DZA65_RS07875	0.26	+0.0
1,643,499	+		DZA65_RS07875	0.26	+0.2
1,643,499	+		DZA65_RS07875	0.26	+0.7
1,643,499	+		DZA65_RS07875	0.26	+1.2
1,643,500	-		DZA65_RS07875	0.26	+1.2
1,643,500	-		DZA65_RS07875	0.26	+1.0
1,643,500	-		DZA65_RS07875	0.26	+0.7
1,643,500	-		DZA65_RS07875	0.26	+1.0
1,643,524	-		DZA65_RS07875	0.28	-0.6
1,643,524	-		DZA65_RS07875	0.28	+1.0
1,643,534	-		DZA65_RS07875	0.28	+0.5
1,643,610	+		DZA65_RS07875	0.34	+1.9
1,643,610	+		DZA65_RS07875	0.34	-0.4
1,643,611	-		DZA65_RS07875	0.34	+1.2
1,643,611	-		DZA65_RS07875	0.34	+0.5
1,643,611	-		DZA65_RS07875	0.34	+0.3
1,643,612	+		DZA65_RS07875	0.34	-3.2
1,643,612	+		DZA65_RS07875	0.34	-0.0
1,643,612	+		DZA65_RS07875	0.34	-0.9
1,643,613	-		DZA65_RS07875	0.34	-1.1
1,643,613	-		DZA65_RS07875	0.34	+0.1
1,643,613	-		DZA65_RS07875	0.34	+1.5
1,643,802	+		DZA65_RS07875	0.49	+1.2
1,643,802	+		DZA65_RS07875	0.49	+0.2
1,643,872	+		DZA65_RS07875	0.54	-1.1
1,643,872	+		DZA65_RS07875	0.54	+0.9
1,643,872	+		DZA65_RS07875	0.54	-0.8
1,643,872	+		DZA65_RS07875	0.54	-0.5
1,643,873	-		DZA65_RS07875	0.54	+0.5
1,643,873	-		DZA65_RS07875	0.54	+1.0
1,643,873	-		DZA65_RS07875	0.54	+0.2
1,643,873	-		DZA65_RS07875	0.54	+0.0
1,643,874	+		DZA65_RS07875	0.54	+1.5
1,643,875	-		DZA65_RS07875	0.54	-1.5
1,643,983	+		DZA65_RS07875	0.62	-0.1
1,643,984	-		DZA65_RS07875	0.62	-3.1
1,644,040	+		DZA65_RS07875	0.67	-0.5
1,644,040	+		DZA65_RS07875	0.67	+0.1
1,644,040	+		DZA65_RS07875	0.67	-1.1
1,644,116	-		DZA65_RS07875	0.73	+1.5
1,644,116	-		DZA65_RS07875	0.73	+1.7
1,644,151	+		DZA65_RS07875	0.75	-0.5
1,644,151	+		DZA65_RS07875	0.75	+1.7
1,644,151	+		DZA65_RS07875	0.75	-1.0
1,644,152	-		DZA65_RS07875	0.75	-1.3
1,644,152	-		DZA65_RS07875	0.75	+0.1
1,644,152	-		DZA65_RS07875	0.75	+0.8
1,644,475	+				-2.7
1,644,475	+				-0.4
1,644,475	+				-1.1
1,644,528	-				-1.3
1,644,609	+				-0.8
1,644,609	+				-0.2
1,644,630	+				-0.4
1,644,630	+				+0.5
1,644,630	+				+0.2
1,644,630	+				-1.0
1,644,631	-				-0.1
1,644,633	-				-0.5
1,644,646	+				-0.8
1,644,646	+				+1.0
1,644,646	+				+1.7
1,644,646	+				+0.8
1,644,646	+				+1.8
1,644,647	-				-0.6
1,644,653	+				-0.7
1,644,653	+				-1.9
1,644,653	+				+0.8
1,644,653	+				+0.5
1,644,653	+				+0.3
1,644,653	+				+0.2
1,644,653	+				+0.8
1,644,654	-				-0.3
1,644,654	-				+0.1
1,644,654	-				+0.3
1,644,654	-				+0.0
1,644,654	-				+0.5
1,644,655	+				-0.5
1,644,656	-				+0.8
1,644,656	-				-1.5
1,644,694	+				-1.0
1,644,694	+				+1.6
1,644,750	+				+1.0
1,644,750	+				-0.5
1,644,751	-				-1.0
1,644,766	+				-1.1
1,644,766	+				-0.2
1,644,767	-				+1.7
1,644,772	+				-0.7
1,644,772	+				-0.3
1,644,773	-				+0.5
1,644,773	-				-0.2
1,644,783	+				-0.5
1,644,783	+				-1.5
1,644,783	+				-0.1
1,644,783	+				+1.1
1,644,783	+				+1.6
1,644,784	-				-1.9
1,644,784	-				+0.9
1,644,784	-				-0.1
1,644,784	-				+0.0
1,644,784	-				-1.1
1,644,833	+		DZA65_RS07880	0.14	+1.2
1,644,833	+		DZA65_RS07880	0.14	+0.7
1,644,834	-		DZA65_RS07880	0.14	-1.5
1,644,838	+		DZA65_RS07880	0.14	+0.5
1,644,838	+		DZA65_RS07880	0.14	+1.5
1,644,838	+		DZA65_RS07880	0.14	-1.1
1,644,852	-		DZA65_RS07880	0.16	+0.3
1,644,852	-		DZA65_RS07880	0.16	+0.5
1,644,880	+		DZA65_RS07880	0.19	+1.0
1,644,881	-		DZA65_RS07880	0.19	-0.6
1,645,124	-		DZA65_RS07880	0.43	-0.3
1,645,131	+		DZA65_RS07880	0.44	-0.9
1,645,132	-		DZA65_RS07880	0.44	-0.9
1,645,142	+		DZA65_RS07880	0.45	+1.8
1,645,164	-		DZA65_RS07880	0.47	-0.2
1,645,164	-		DZA65_RS07880	0.47	+0.0
1,645,165	+		DZA65_RS07880	0.47	-0.7
1,645,172	+		DZA65_RS07880	0.48	+0.5
1,645,172	+		DZA65_RS07880	0.48	+0.0
1,645,173	-		DZA65_RS07880	0.48	-1.3
1,645,173	-		DZA65_RS07880	0.48	+0.5
1,645,185	+		DZA65_RS07880	0.49	-1.1
1,645,185	+		DZA65_RS07880	0.49	-0.5
1,645,229	+		DZA65_RS07880	0.54	+0.5
1,645,230	-		DZA65_RS07880	0.54	+0.0
1,645,242	+				-1.1
1,645,243	-		DZA65_RS07880	0.55	-1.7
1,645,243	-		DZA65_RS07880	0.55	+0.3
1,645,243	-		DZA65_RS07880	0.55	+1.4
1,645,245	-		DZA65_RS07880	0.56	+0.2
1,645,247	-		DZA65_RS07880	0.56	+0.2
1,645,249	+		DZA65_RS07880	0.56	-1.1
1,645,253	+		DZA65_RS07880	0.56	+1.0
1,645,253	+		DZA65_RS07880	0.56	-0.3
1,645,254	-		DZA65_RS07880	0.56	+0.0
1,645,254	-		DZA65_RS07880	0.56	-0.1
1,645,269	+		DZA65_RS07880	0.58	+0.9
1,645,295	+		DZA65_RS07880	0.61	-0.1
1,645,296	-		DZA65_RS07880	0.61	+0.8
1,645,303	+		DZA65_RS07880	0.61	+1.2
1,645,303	+		DZA65_RS07880	0.61	+0.0
1,645,304	-		DZA65_RS07880	0.62	-0.2
1,645,304	-		DZA65_RS07880	0.62	-1.1
1,645,304	-		DZA65_RS07880	0.62	-2.3
1,645,307	-		DZA65_RS07880	0.62	-2.1
1,645,307	-		DZA65_RS07880	0.62	-0.5
1,645,315	+		DZA65_RS07880	0.63	-2.5
1,645,315	+		DZA65_RS07880	0.63	-0.8
1,645,327	+		DZA65_RS07880	0.64	-1.9
1,645,327	+		DZA65_RS07880	0.64	+1.6
1,645,328	-		DZA65_RS07880	0.64	+0.8
1,645,328	-		DZA65_RS07880	0.64	+0.9
1,645,363	+		DZA65_RS07880	0.67	-0.2
1,645,411	-		DZA65_RS07880	0.72	+1.5
1,645,411	-		DZA65_RS07880	0.72	-0.4
1,645,411	-		DZA65_RS07880	0.72	+0.7
1,645,434	-		DZA65_RS07880	0.75	-0.8
1,645,444	+		DZA65_RS07880	0.76	+0.5
1,645,452	+		DZA65_RS07880	0.76	+0.8
1,645,452	+		DZA65_RS07880	0.76	+0.0
1,645,461	+		DZA65_RS07880	0.77	-0.2
1,645,461	+		DZA65_RS07880	0.77	-1.9
1,645,461	+		DZA65_RS07880	0.77	-1.5
1,645,462	-		DZA65_RS07880	0.77	-0.5
1,645,462	-		DZA65_RS07880	0.77	-0.2
1,645,462	-		DZA65_RS07880	0.77	-0.8
1,645,462	-		DZA65_RS07880	0.77	+0.2
1,645,462	-		DZA65_RS07880	0.77	-0.5
1,645,465	+		DZA65_RS07880	0.78	-0.1
1,645,465	+		DZA65_RS07880	0.78	-0.1
1,645,465	+		DZA65_RS07880	0.78	+0.0
1,645,465	+		DZA65_RS07880	0.78	-2.1
1,645,465	+		DZA65_RS07880	0.78	+0.5
1,645,465	+		DZA65_RS07880	0.78	-2.3
1,645,465	+		DZA65_RS07880	0.78	+0.8
1,645,465	+		DZA65_RS07880	0.78	+1.0
1,645,465	+		DZA65_RS07880	0.78	-0.1
1,645,465	+		DZA65_RS07880	0.78	-1.5
1,645,466	-		DZA65_RS07880	0.78	-0.1
1,645,466	-		DZA65_RS07880	0.78	+0.0
1,645,466	-		DZA65_RS07880	0.78	+1.0
1,645,466	-		DZA65_RS07880	0.78	-0.2
1,645,466	-		DZA65_RS07880	0.78	+0.3
1,645,466	-		DZA65_RS07880	0.78	+0.1
1,645,466	-		DZA65_RS07880	0.78	-1.9
1,645,466	-		DZA65_RS07880	0.78	-0.9
1,645,466	-		DZA65_RS07880	0.78	-0.0
1,645,466	-		DZA65_RS07880	0.78	-0.0
1,645,466	-		DZA65_RS07880	0.78	+0.3
1,645,466	-		DZA65_RS07880	0.78	-1.9
1,645,466	-		DZA65_RS07880	0.78	+1.2
1,645,466	-		DZA65_RS07880	0.78	+1.4