Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07810

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,628,361	+				+1.2
1,628,382	-				+0.1
1,628,413	-				+2.4
1,628,467	+		DZA65_RS07800	0.11	+1.1
1,628,481	+		DZA65_RS07800	0.16	-0.8
1,628,481	+		DZA65_RS07800	0.16	+1.1
1,628,481	+		DZA65_RS07800	0.16	-0.5
1,628,481	+		DZA65_RS07800	0.16	+0.5
1,628,482	-		DZA65_RS07800	0.17	+0.7
1,628,482	-		DZA65_RS07800	0.17	-0.1
1,628,487	+		DZA65_RS07800	0.19	-2.1
1,628,487	+		DZA65_RS07800	0.19	+2.5
1,628,546	+		DZA65_RS07800	0.41	-0.5
1,628,547	-		DZA65_RS07800	0.42	-0.8
1,628,556	-		DZA65_RS07800	0.45	+0.1
1,628,583	+		DZA65_RS07800	0.56	+0.1
1,628,584	-		DZA65_RS07800	0.56	-0.5
1,628,584	-		DZA65_RS07800	0.56	-1.4
1,628,703	+				-1.6
1,628,703	+				-0.3
1,628,703	+				-1.5
1,628,703	+				-1.9
1,628,703	+				-1.4
1,628,704	-				-1.5
1,628,704	-				-0.1
1,628,758	+		DZA65_RS07805	0.11	-1.5
1,628,759	-		DZA65_RS07805	0.11	-1.5
1,628,886	+		DZA65_RS07805	0.37	-3.1
1,628,886	+		DZA65_RS07805	0.37	-0.9
1,628,887	-		DZA65_RS07805	0.37	-2.3
1,628,923	+		DZA65_RS07805	0.45	-0.3
1,628,923	+		DZA65_RS07805	0.45	-1.3
1,628,923	+		DZA65_RS07805	0.45	-1.1
1,628,923	+		DZA65_RS07805	0.45	+1.3
1,628,923	+		DZA65_RS07805	0.45	-0.1
1,628,923	+		DZA65_RS07805	0.45	+0.6
1,628,923	+		DZA65_RS07805	0.45	+0.5
1,628,923	+		DZA65_RS07805	0.45	+0.5
1,628,924	-		DZA65_RS07805	0.45	-0.5
1,628,924	-		DZA65_RS07805	0.45	-1.9
1,628,924	-		DZA65_RS07805	0.45	-1.1
1,628,924	-		DZA65_RS07805	0.45	+0.6
1,628,924	-		DZA65_RS07805	0.45	-0.3
1,628,924	-		DZA65_RS07805	0.45	-0.5
1,628,924	-		DZA65_RS07805	0.45	-0.9
1,628,924	-		DZA65_RS07805	0.45	-1.3
1,628,924	-		DZA65_RS07805	0.45	-0.1
1,628,986	+		DZA65_RS07805	0.58	-0.5
1,628,986	+		DZA65_RS07805	0.58	+0.8
1,628,986	+		DZA65_RS07805	0.58	+0.5
1,628,986	+		DZA65_RS07805	0.58	-0.5
1,628,986	+		DZA65_RS07805	0.58	-0.7
1,628,986	+		DZA65_RS07805	0.58	+0.1
1,628,987	-		DZA65_RS07805	0.58	-0.1
1,628,987	-		DZA65_RS07805	0.58	-0.3
1,629,052	+		DZA65_RS07805	0.71	-1.8
1,629,052	+		DZA65_RS07805	0.71	-0.9
1,629,052	+		DZA65_RS07805	0.71	-0.5
1,629,053	-		DZA65_RS07805	0.71	-1.9
1,629,106	+		DZA65_RS07805	0.82	+0.4
1,629,106	+		DZA65_RS07805	0.82	-0.8
1,629,106	+		DZA65_RS07805	0.82	-0.1
1,629,107	-		DZA65_RS07805	0.82	-1.3
1,629,107	-		DZA65_RS07805	0.82	+0.7
1,629,107	-		DZA65_RS07805	0.82	-0.3
1,629,107	-		DZA65_RS07805	0.82	+0.7
1,629,108	+		DZA65_RS07805	0.83	+0.5
1,629,108	+		DZA65_RS07805	0.83	-1.7
1,629,108	+		DZA65_RS07805	0.83	-1.9
1,629,108	+		DZA65_RS07805	0.83	-1.5
1,629,126	+		DZA65_RS07805	0.86	-0.1
1,629,127	-		DZA65_RS07805	0.87	-3.0
1,629,127	-		DZA65_RS07805	0.87	+0.1
1,629,165	+				-0.5
1,629,190	+				+0.5
1,629,190	+				+1.0
1,629,190	+				+0.5
1,629,191	-				+0.8
1,629,191	-				+0.7
1,629,191	-				-0.3
1,629,243	+				+0.1
1,629,243	+				+1.4
1,629,257	-				+0.5
1,629,257	-				-0.3
1,629,272	+				-1.9
1,629,288	+				+1.0
1,629,289	-				-1.5
1,629,289	-				-1.9
1,629,304	+				+0.3
1,629,304	+				-3.0
1,629,304	+				+0.1
1,629,305	-				+0.5
1,629,305	-				-2.3
1,629,305	-				-1.0
1,629,424	+		DZA65_RS07810	0.19	-0.1
1,629,424	+		DZA65_RS07810	0.19	+0.1
1,629,424	+		DZA65_RS07810	0.19	+0.6
1,629,425	-		DZA65_RS07810	0.20	-0.4
1,629,425	-		DZA65_RS07810	0.20	-0.4
1,629,425	-		DZA65_RS07810	0.20	+0.3
1,629,425	-		DZA65_RS07810	0.20	-0.3
1,629,499	+		DZA65_RS07810	0.35	+1.2
1,629,499	+		DZA65_RS07810	0.35	+0.6
1,629,499	+		DZA65_RS07810	0.35	+2.8
1,629,499	+		DZA65_RS07810	0.35	-0.1
1,629,500	-		DZA65_RS07810	0.35	+0.4
1,629,500	-		DZA65_RS07810	0.35	-0.8
1,629,500	-		DZA65_RS07810	0.35	+1.0
1,629,500	-		DZA65_RS07810	0.35	-0.7
1,629,500	-		DZA65_RS07810	0.35	+1.1
1,629,521	+		DZA65_RS07810	0.39	+1.3
1,629,787	+				-1.7
1,629,787	+				+0.8
1,629,787	+				-1.5
1,629,787	+				+0.8
1,629,788	-				-0.9
1,629,788	-				+2.5
1,629,788	-				+0.2
1,629,788	-				+1.2
1,629,788	-				+1.3
1,629,788	-				+1.1
1,629,788	-				-1.1
1,629,788	-				+1.2
1,629,789	+				+0.7
1,629,790	-				+1.8
1,629,808	-				-0.5
1,629,814	+				+0.5
1,629,845	+				+0.9
1,629,845	+				-0.5
1,629,845	+				+0.9
1,629,845	+				+1.3
1,629,845	+				+0.8
1,629,845	+				-1.9
1,629,845	+				+0.8
1,629,846	-				+0.2
1,629,846	-				-2.0
1,629,846	-				-1.5
1,629,846	-				+2.5
1,629,846	-				+2.5
1,629,846	-				+2.1
1,629,846	-				+0.5
1,629,849	+				+1.0
1,629,878	+		DZA65_RS07815	0.15	+0.5
1,629,879	-		DZA65_RS07815	0.16	-0.1
1,629,912	+		DZA65_RS07815	0.24	-0.1
1,629,912	+		DZA65_RS07815	0.24	-2.1
1,629,912	+		DZA65_RS07815	0.24	-0.5
1,629,913	-		DZA65_RS07815	0.24	+0.4
1,629,913	-		DZA65_RS07815	0.24	+0.6
1,630,052	+		DZA65_RS07815	0.59	-1.3
1,630,052	+		DZA65_RS07815	0.59	+1.0
1,630,052	+		DZA65_RS07815	0.59	-1.1
1,630,127	+		DZA65_RS07815	0.78	-0.5
1,630,128	-		DZA65_RS07815	0.78	-1.9
1,630,128	-		DZA65_RS07815	0.78	-0.2
1,630,130	+		DZA65_RS07815	0.78	+1.2
1,630,130	+		DZA65_RS07815	0.78	+1.0
1,630,130	+		DZA65_RS07815	0.78	+0.8
1,630,130	+		DZA65_RS07815	0.78	-1.0
1,630,130	+		DZA65_RS07815	0.78	+0.9
1,630,130	+				+1.5
1,630,130	+		DZA65_RS07815	0.78	-0.5
1,630,130	+		DZA65_RS07815	0.78	-1.3
1,630,130	+		DZA65_RS07815	0.78	-0.1
1,630,130	+		DZA65_RS07815	0.78	+1.1
1,630,130	+		DZA65_RS07815	0.78	-2.1
1,630,130	+		DZA65_RS07815	0.78	-1.9
1,630,130	+		DZA65_RS07815	0.78	+0.2
1,630,130	+		DZA65_RS07815	0.78	+0.1
1,630,130	+		DZA65_RS07815	0.78	-0.6
1,630,130	+		DZA65_RS07815	0.78	-0.7
1,630,130	+		DZA65_RS07815	0.78	+1.2
1,630,130	+		DZA65_RS07815	0.78	+0.4
1,630,130	+		DZA65_RS07815	0.78	-0.2
1,630,130	+		DZA65_RS07815	0.78	-0.1
1,630,130	+		DZA65_RS07815	0.78	+0.1
1,630,130	+		DZA65_RS07815	0.78	+0.3
1,630,130	+		DZA65_RS07815	0.78	+0.9
1,630,130	+		DZA65_RS07815	0.78	+0.1
1,630,130	+		DZA65_RS07815	0.78	-1.5
1,630,131	-		DZA65_RS07815	0.79	-1.9
1,630,131	-		DZA65_RS07815	0.79	-0.3
1,630,131	-		DZA65_RS07815	0.79	+0.7
1,630,131	-		DZA65_RS07815	0.79	-1.9
1,630,131	-		DZA65_RS07815	0.79	-2.5
1,630,131	-		DZA65_RS07815	0.79	-0.8
1,630,131	-		DZA65_RS07815	0.79	-0.3
1,630,131	-		DZA65_RS07815	0.79	-2.9
1,630,131	-		DZA65_RS07815	0.79	+0.5
1,630,131	-		DZA65_RS07815	0.79	-3.0
1,630,131	-		DZA65_RS07815	0.79	+0.8
1,630,131	-		DZA65_RS07815	0.79	-0.1
1,630,156	+		DZA65_RS07815	0.85	-1.1
1,630,156	+		DZA65_RS07815	0.85	-2.0
1,630,157	-		DZA65_RS07815	0.85	-0.3
1,630,157	-		DZA65_RS07815	0.85	+0.1
1,630,196	+				+0.7
1,630,247	-				-0.8
1,630,294	+		DZA65_RS07820	0.10	-1.1
1,630,295	-		DZA65_RS07820	0.10	-0.7
1,630,585	+		DZA65_RS07820	0.47	+0.5
1,630,585	+		DZA65_RS07820	0.47	+0.6
1,630,585	+		DZA65_RS07820	0.47	-0.5
1,630,585	+		DZA65_RS07820	0.47	-1.0
1,630,585	+		DZA65_RS07820	0.47	-0.9
1,630,585	+		DZA65_RS07820	0.47	+0.2
1,630,585	+		DZA65_RS07820	0.47	-1.1
1,630,586	-		DZA65_RS07820	0.47	-0.5
1,630,586	-		DZA65_RS07820	0.47	-0.5
1,630,586	-		DZA65_RS07820	0.47	-1.1
1,630,586	-		DZA65_RS07820	0.47	+0.9
1,630,586	-		DZA65_RS07820	0.47	-1.1
1,630,586	-		DZA65_RS07820	0.47	-0.4
1,630,586	-		DZA65_RS07820	0.47	-0.2
1,630,586	-		DZA65_RS07820	0.47	+0.7
1,630,586	-		DZA65_RS07820	0.47	-0.5
1,630,586	-		DZA65_RS07820	0.47	+0.8
1,630,586	-		DZA65_RS07820	0.47	-0.4
1,630,586	-		DZA65_RS07820	0.47	-0.9
1,630,586	-		DZA65_RS07820	0.47	-0.5
1,630,586	-		DZA65_RS07820	0.47	-3.0
1,630,630	+		DZA65_RS07820	0.53	-0.5
1,630,631	-		DZA65_RS07820	0.53	-0.5
1,630,673	-		DZA65_RS07820	0.58	-2.3