Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07775

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,619,366	+				+0.0
1,619,367	-				-0.3
1,619,367	-				-0.2
1,619,367	-				-1.0
1,619,367	-				+0.3
1,619,416	+				+0.1
1,619,416	+				+0.6
1,619,417	-				+1.2
1,619,417	-				-1.1
1,619,417	-				-2.1
1,619,417	-				+0.8
1,619,417	-				-0.9
1,619,422	+				-1.8
1,619,423	-				+1.5
1,619,425	+				+2.3
1,619,425	+				-0.1
1,619,426	-				-1.8
1,619,428	+				-0.3
1,619,429	-				+2.0
1,619,445	+				-0.3
1,619,445	+				-2.1
1,619,445	+				+0.1
1,619,446	-				-0.9
1,619,446	-				+1.0
1,619,446	-				+0.8
1,619,447	+				+0.5
1,619,447	+				-0.8
1,619,448	-				+1.5
1,619,448	-				-0.8
1,619,448	-				-1.1
1,619,448	-				+1.5
1,619,448	-				+0.0
1,619,448	-				+0.5
1,619,468	+				-1.0
1,619,469	-				+0.6
1,619,489	+				-0.1
1,619,524	+				+0.2
1,619,524	+				+0.7
1,619,578	-				+1.2
1,619,580	+				-1.3
1,619,619	-				-0.4
1,619,628	+				-0.1
1,619,629	-				-1.5
1,619,629	-				+0.4
1,619,629	-				+0.8
1,619,673	-				+0.9
1,619,727	-				-1.0
1,619,780	+				+1.1
1,619,797	-				-1.5
1,619,889	+				-0.3
1,619,892	+				-0.1
1,619,899	+				-0.3
1,619,904	-				+0.5
1,619,904	-				+1.2
1,619,926	-				+1.3
1,619,935	+				-0.0
1,619,936	-				+0.5
1,619,936	-				-1.5
1,619,938	+				+0.5
1,619,996	+				+1.7
1,619,996	+				-0.2
1,619,997	-				+0.0
1,620,095	-				-0.9
1,620,099	+				-2.1
1,620,100	-				+2.8
1,620,122	+				+2.8
1,620,122	+				-1.1
1,620,122	+				-0.3
1,620,122	+				+1.7
1,620,122	+				+2.5
1,620,141	+				+0.0
1,620,141	+				+1.4
1,620,141	+				-0.8
1,620,142	-				+0.5
1,620,175	-				-0.1
1,620,176	+				+0.6
1,620,181	+				-1.5
1,620,181	+				+0.5
1,620,181	+				-0.4
1,620,181	+				-0.1
1,620,182	-				-0.9
1,620,182	-				-0.3
1,620,182	-				-2.8
1,620,196	-				-0.5
1,620,202	+				+0.9
1,620,206	+				+0.8
1,620,206	+				+0.1
1,620,212	+				-0.1
1,620,212	+				-0.5
1,620,241	+				-1.0
1,620,242	-				-0.7
1,620,242	-				+0.2
1,620,250	+				+1.3
1,620,250	+				+0.1
1,620,252	+				+2.0
1,620,252	+				-0.4
1,620,252	+				+0.1
1,620,252	+				+2.4
1,620,252	+				-0.7
1,620,253	-				-1.9
1,620,253	-				-1.8
1,620,272	+				+0.9
1,620,272	+				-1.0
1,620,272	+				-0.3
1,620,311	+				+1.1
1,620,311	+				+2.2
1,620,311	+				-0.2
1,620,312	-				-0.8
1,620,312	-				+0.8
1,620,312	-				-0.1
1,620,316	+				-0.8
1,620,316	+				-2.5
1,620,316	+				-0.1
1,620,316	+				-1.8
1,620,317	-				+0.9
1,620,317	-				+0.5
1,620,329	+				+1.3
1,620,329	+				-1.1
1,620,329	+				+0.7
1,620,329	+				-0.5
1,620,329	+				+0.5
1,620,329	+				+0.5
1,620,329	+				+1.2
1,620,330	-				+0.0
1,620,330	-				-2.5
1,620,330	-				+0.8
1,620,330	-				-0.3
1,620,333	+				+0.0
1,620,334	-				-0.5
1,620,395	+				-1.0
1,620,395	+				+0.0
1,620,395	+				+2.1
1,620,396	-				+0.9
1,620,521	+				+0.7
1,620,521	+				-2.1
1,620,521	+				-3.0
1,620,521	+				+0.3
1,620,521	+				+0.3
1,620,521	+				-0.5
1,620,521	+				-2.9
1,620,522	-				-0.7
1,620,522	-				+0.5
1,620,522	-				-0.2
1,620,522	-				+1.1
1,620,542	+				+0.9
1,620,543	-				-0.1
1,620,543	-				-0.1
1,620,543	-				-2.3
1,620,584	+		DZA65_RS07775	0.10	+1.5
1,620,736	-		DZA65_RS07775	0.17	-1.4
1,620,813	-		DZA65_RS07775	0.21	-1.3
1,621,055	-		DZA65_RS07775	0.32	+0.9
1,621,057	+		DZA65_RS07775	0.32	-0.5
1,621,058	-		DZA65_RS07775	0.32	-0.5
1,621,058	-		DZA65_RS07775	0.32	+0.5
1,621,058	-		DZA65_RS07775	0.32	-0.2
1,621,058	-		DZA65_RS07775	0.32	+0.2
1,621,058	-		DZA65_RS07775	0.32	-0.2
1,621,092	+		DZA65_RS07775	0.34	-0.0
1,621,092	+		DZA65_RS07775	0.34	-0.3
1,621,092	+		DZA65_RS07775	0.34	+2.0
1,621,093	-		DZA65_RS07775	0.34	+0.6
1,621,093	-		DZA65_RS07775	0.34	+0.6
1,621,093	-		DZA65_RS07775	0.34	+0.2
1,621,093	-		DZA65_RS07775	0.34	-0.8
1,621,093	-		DZA65_RS07775	0.34	-1.9
1,621,147	+		DZA65_RS07775	0.36	-0.1
1,621,148	-		DZA65_RS07775	0.36	-0.5
1,621,148	-		DZA65_RS07775	0.36	+0.5
1,621,204	+		DZA65_RS07775	0.39	-0.3
1,621,429	-		DZA65_RS07775	0.49	-1.0
1,621,493	+		DZA65_RS07775	0.52	-0.3
1,621,502	+		DZA65_RS07775	0.53	-1.4
1,621,503	-		DZA65_RS07775	0.53	-0.9
1,621,503	-		DZA65_RS07775	0.53	-1.3
1,621,503	-		DZA65_RS07775	0.53	-0.1
1,621,503	-		DZA65_RS07775	0.53	+0.6
1,621,503	-		DZA65_RS07775	0.53	-0.1
1,621,503	-		DZA65_RS07775	0.53	-1.9
1,621,679	+		DZA65_RS07775	0.61	+1.2
1,621,679	+		DZA65_RS07775	0.61	-0.1
1,621,691	+		DZA65_RS07775	0.61	+0.2
1,621,691	+		DZA65_RS07775	0.61	-1.2
1,621,691	+		DZA65_RS07775	0.61	-0.8
1,621,691	+		DZA65_RS07775	0.61	-1.3
1,621,691	+		DZA65_RS07775	0.61	+0.2
1,621,692	-		DZA65_RS07775	0.61	+1.2
1,621,692	-		DZA65_RS07775	0.61	-0.8
1,621,692	-		DZA65_RS07775	0.61	+0.2
1,621,692	-		DZA65_RS07775	0.61	+2.0
1,621,692	-		DZA65_RS07775	0.61	+0.9
1,621,692	-		DZA65_RS07775	0.61	+1.2
1,621,692	-		DZA65_RS07775	0.61	-0.5
1,621,692	-		DZA65_RS07775	0.61	-0.5
1,621,769	+		DZA65_RS07775	0.65	+0.6
1,622,010	+		DZA65_RS07775	0.76	-1.9
1,622,010	+		DZA65_RS07775	0.76	+1.5
1,622,010	+		DZA65_RS07775	0.76	+1.0
1,622,010	+		DZA65_RS07775	0.76	+0.3
1,622,011	-		DZA65_RS07775	0.76	+2.0
1,622,011	-		DZA65_RS07775	0.76	-0.5
1,622,011	-		DZA65_RS07775	0.76	+0.5
1,622,011	-		DZA65_RS07775	0.76	-0.8
1,622,013	+		DZA65_RS07775	0.76	+1.9
1,622,104	+		DZA65_RS07775	0.80	-0.4
1,622,123	+		DZA65_RS07775	0.81	+0.4
1,622,123	+		DZA65_RS07775	0.81	-0.5
1,622,123	+		DZA65_RS07775	0.81	+0.3
1,622,123	+		DZA65_RS07775	0.81	+0.5
1,622,123	+		DZA65_RS07775	0.81	-0.8
1,622,124	-		DZA65_RS07775	0.81	+0.5
1,622,124	-		DZA65_RS07775	0.81	-1.9
1,622,124	-		DZA65_RS07775	0.81	-1.5
1,622,124	-		DZA65_RS07775	0.81	-1.2
1,622,124	-		DZA65_RS07775	0.81	+1.0
1,622,126	+		DZA65_RS07775	0.81	-2.0
1,622,127	-		DZA65_RS07775	0.81	+0.7
1,622,266	+		DZA65_RS07775	0.88	+1.7
1,622,267	-		DZA65_RS07775	0.88	-0.3
1,622,267	-		DZA65_RS07775	0.88	+0.8
1,622,318	+				+1.0
1,622,319	-				-2.5
1,622,390	+				+0.9
1,622,390	+				-0.5
1,622,390	+				-0.2
1,622,390	+				-1.1
1,622,390	+				+0.5
1,622,390	+				+0.3
1,622,391	-				+0.0
1,622,391	-				+0.2
1,622,391	-				+0.2
1,622,391	-				+1.1
1,622,391	-				-1.9
1,622,391	-				-0.5
1,622,501	+				+0.3
1,622,539	-				-2.3
1,622,604	-				+2.0
1,622,606	+				-0.7
1,622,606	+				+0.5
1,622,636	-				-0.3
1,622,678	+				-0.6
1,622,678	+				-1.0
1,622,678	+				-0.3
1,622,678	+				-1.9
1,622,678	+				-1.4
1,622,679	-				+0.3
1,622,680	+				-0.4
1,622,680	+				-1.1
1,622,681	-				-0.7
1,622,681	-				+0.5