Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07580

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,579,198	+				+0.6
1,579,198	+				+1.5
1,579,217	+		DZA65_RS07575	0.11	+0.1
1,579,268	+		DZA65_RS07575	0.18	+1.1
1,579,271	+		DZA65_RS07575	0.18	+1.0
1,579,271	+		DZA65_RS07575	0.18	-0.7
1,579,391	-		DZA65_RS07575	0.34	-1.1
1,579,484	+		DZA65_RS07575	0.45	+0.2
1,579,484	+		DZA65_RS07575	0.45	+0.3
1,579,511	-		DZA65_RS07575	0.49	-0.1
1,579,571	+		DZA65_RS07575	0.57	-1.8
1,579,600	-		DZA65_RS07575	0.60	+0.5
1,579,600	-		DZA65_RS07575	0.60	+0.3
1,579,601	+		DZA65_RS07575	0.60	-1.8
1,579,724	+		DZA65_RS07575	0.76	+0.5
1,579,725	-		DZA65_RS07575	0.76	-1.5
1,579,733	+		DZA65_RS07575	0.77	-1.0
1,579,742	+		DZA65_RS07575	0.78	+0.5
1,579,814	+		DZA65_RS07575	0.88	+0.6
1,579,815	-		DZA65_RS07575	0.88	+1.2
1,579,818	+		DZA65_RS07575	0.88	+1.6
1,579,959	-				-0.3
1,579,984	+				+0.7
1,580,033	-				+0.5
1,580,090	+				-2.1
1,580,090	+				-0.7
1,580,091	-				-0.4
1,580,095	-				-2.5
1,580,113	-				-0.3
1,580,126	+				-0.5
1,580,127	-				+1.5
1,580,131	+				+0.7
1,580,131	+				+1.1
1,580,131	+				-1.0
1,580,131	+				+0.5
1,580,132	-				+1.5
1,580,132	-				+0.9
1,580,132	-				+0.6
1,580,137	-				-0.2
1,580,199	-				-0.5
1,580,204	+				+2.2
1,580,241	+				-1.1
1,580,242	-				-0.3
1,580,243	+				-1.5
1,580,243	+				-0.1
1,580,244	-				-0.2
1,580,244	-				+0.1
1,580,366	+		DZA65_RS07580	0.23	+0.7
1,580,367	-		DZA65_RS07580	0.23	+0.5
1,580,367	-		DZA65_RS07580	0.23	+0.6
1,580,375	+		DZA65_RS07580	0.24	+0.6
1,580,375	+		DZA65_RS07580	0.24	-0.8
1,580,375	+		DZA65_RS07580	0.24	-0.5
1,580,375	+		DZA65_RS07580	0.24	+0.9
1,580,404	+		DZA65_RS07580	0.28	-0.5
1,580,404	+		DZA65_RS07580	0.28	-0.2
1,580,405	-		DZA65_RS07580	0.28	+0.1
1,580,472	+		DZA65_RS07580	0.37	+0.6
1,580,525	+		DZA65_RS07580	0.44	+0.9
1,580,525	+		DZA65_RS07580	0.44	+1.7
1,580,526	-		DZA65_RS07580	0.44	-0.0
1,580,526	-		DZA65_RS07580	0.44	-0.2
1,580,557	+		DZA65_RS07580	0.48	-0.3
1,580,590	-		DZA65_RS07580	0.53	-2.3
1,580,623	+		DZA65_RS07580	0.57	-2.1
1,580,624	-		DZA65_RS07580	0.57	-1.5
1,580,624	-		DZA65_RS07580	0.57	-0.1
1,580,686	+		DZA65_RS07580	0.65	+0.7
1,580,687	-		DZA65_RS07580	0.66	+0.5
1,580,689	+		DZA65_RS07580	0.66	+2.3
1,580,765	-		DZA65_RS07580	0.76	-1.4
1,580,801	+		DZA65_RS07580	0.81	-1.8
1,580,801	+		DZA65_RS07580	0.81	-0.7
1,580,801	+		DZA65_RS07580	0.81	-0.8
1,580,820	+		DZA65_RS07580	0.83	+0.5
1,580,859	-		DZA65_RS07580	0.89	+0.2
1,580,927	+				-0.3
1,580,927	+				-0.7
1,580,927	+				-0.4
1,580,928	-				-0.4
1,580,928	-				+1.4
1,581,029	+				+0.1
1,581,030	-				-0.5
1,581,030	-				+0.9
1,581,031	+				-0.2
1,581,122	+				+0.3
1,581,122	+				+1.5
1,581,122	+				-0.1
1,581,156	-		DZA65_RS07585	0.12	-0.3
1,581,156	-		DZA65_RS07585	0.12	-1.5
1,581,156	-				+0.5
1,581,188	+		DZA65_RS07585	0.13	+0.5
1,581,188	+		DZA65_RS07585	0.13	+1.1
1,581,189	-		DZA65_RS07585	0.13	-0.5
1,581,191	+		DZA65_RS07585	0.14	-0.5
1,581,191	+		DZA65_RS07585	0.14	-0.7
1,581,191	+		DZA65_RS07585	0.14	+0.5
1,581,191	+		DZA65_RS07585	0.14	+1.1
1,581,191	+		DZA65_RS07585	0.14	-0.5
1,581,191	+		DZA65_RS07585	0.14	+0.3
1,581,191	+		DZA65_RS07585	0.14	+0.5
1,581,192	-		DZA65_RS07585	0.14	-0.1
1,581,192	-		DZA65_RS07585	0.14	-0.4
1,581,192	-		DZA65_RS07585	0.14	-0.8
1,581,192	-		DZA65_RS07585	0.14	+0.5
1,581,192	-		DZA65_RS07585	0.14	+0.2
1,581,194	+		DZA65_RS07585	0.14	+0.2
1,581,195	-		DZA65_RS07585	0.14	+0.3
1,581,237	-		DZA65_RS07585	0.16	-0.5
1,581,397	-		DZA65_RS07585	0.25	+1.5
1,581,425	+		DZA65_RS07585	0.27	+0.5
1,581,425	+		DZA65_RS07585	0.27	+0.6
1,581,426	-		DZA65_RS07585	0.27	+1.3
1,581,428	+		DZA65_RS07585	0.27	+0.1
1,581,429	-		DZA65_RS07585	0.27	-3.0
1,581,429	-		DZA65_RS07585	0.27	-0.5
1,581,429	-		DZA65_RS07585	0.27	-0.3
1,581,429	-		DZA65_RS07585	0.27	-0.9
1,581,487	+		DZA65_RS07585	0.30	+0.1
1,581,488	-		DZA65_RS07585	0.30	-1.1
1,581,509	+		DZA65_RS07585	0.32	-0.8
1,581,509	+		DZA65_RS07585	0.32	-0.2
1,581,556	-		DZA65_RS07585	0.34	-0.5
1,581,563	-		DZA65_RS07585	0.35	+1.4
1,581,597	+		DZA65_RS07585	0.37	+0.2
1,581,598	-		DZA65_RS07585	0.37	+0.0
1,581,598	-		DZA65_RS07585	0.37	+2.8
1,581,628	+		DZA65_RS07585	0.38	+0.9
1,581,628	+		DZA65_RS07585	0.38	-1.5
1,581,628	+		DZA65_RS07585	0.38	-0.8
1,581,628	+		DZA65_RS07585	0.38	+1.1
1,581,629	-		DZA65_RS07585	0.38	+1.1
1,581,629	-		DZA65_RS07585	0.38	+0.2
1,581,629	-		DZA65_RS07585	0.38	+1.5
1,581,629	-		DZA65_RS07585	0.38	+0.9
1,581,629	-		DZA65_RS07585	0.38	+0.3
1,581,629	-		DZA65_RS07585	0.38	+0.9
1,581,629	-		DZA65_RS07585	0.38	+0.3
1,581,696	+		DZA65_RS07585	0.42	+0.5
1,581,747	-		DZA65_RS07585	0.45	+0.2
1,581,747	-		DZA65_RS07585	0.45	+0.3
1,581,757	+		DZA65_RS07585	0.46	-0.5
1,581,757	+		DZA65_RS07585	0.46	-0.1
1,581,757	+		DZA65_RS07585	0.46	+0.2
1,581,769	+		DZA65_RS07585	0.46	-0.5
1,581,821	+		DZA65_RS07585	0.49	+0.5
1,581,821	+		DZA65_RS07585	0.49	+1.2
1,581,821	+		DZA65_RS07585	0.49	+0.1
1,581,821	+		DZA65_RS07585	0.49	-0.7
1,581,821	+		DZA65_RS07585	0.49	-2.1
1,581,821	+		DZA65_RS07585	0.49	+0.3
1,581,821	+		DZA65_RS07585	0.49	-1.8
1,581,822	-		DZA65_RS07585	0.49	+2.2
1,581,822	-		DZA65_RS07585	0.49	+0.2
1,581,822	-		DZA65_RS07585	0.49	-1.5
1,581,923	+		DZA65_RS07585	0.55	-0.5
1,581,942	+		DZA65_RS07585	0.56	-0.8