Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07355

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,532,050	+		DZA65_RS07350	0.89	-0.3
1,532,050	+		DZA65_RS07350	0.89	-1.5
1,532,050	+		DZA65_RS07350	0.89	+0.6
1,532,050	+		DZA65_RS07350	0.89	-0.1
1,532,050	+		DZA65_RS07350	0.89	-0.3
1,532,050	+		DZA65_RS07350	0.89	+0.8
1,532,051	-		DZA65_RS07350	0.89	-3.0
1,532,051	-		DZA65_RS07350	0.89	-2.2
1,532,051	-		DZA65_RS07350	0.89	+0.2
1,532,051	-		DZA65_RS07350	0.89	-0.2
1,532,051	-		DZA65_RS07350	0.89	+0.6
1,532,085	+				+0.5
1,532,085	+				-0.1
1,532,119	-				+1.1
1,532,119	-				+0.1
1,532,119	-				-0.1
1,532,119	-				-2.5
1,532,119	-				-1.5
1,532,129	-				-0.5
1,532,134	+				-1.2
1,532,135	-				-1.3
1,532,135	-				+0.7
1,532,135	-				-0.7
1,532,230	+				+0.8
1,532,294	-				+0.7
1,532,346	+				-0.6
1,532,346	+				-1.5
1,532,346	+				-1.1
1,532,347	-				-1.5
1,532,347	-				-0.7
1,532,347	-				+0.8
1,532,347	-				-0.7
1,532,347	-				-3.6
1,532,361	+				+1.1
1,532,367	+				-0.0
1,532,367	+				-0.7
1,532,368	-				-1.1
1,532,368	-				-0.1
1,532,384	+				-1.5
1,532,402	-				+0.5
1,532,403	+				-0.7
1,532,403	+				-0.1
1,532,424	-				+0.3
1,532,437	+				-1.5
1,532,437	+				-2.1
1,532,437	+				-0.5
1,532,437	+				-1.5
1,532,437	+				-1.5
1,532,437	+				+0.5
1,532,438	-				-2.7
1,532,438	-				+2.6
1,532,442	+				+0.5
1,532,442	+				+1.2
1,532,443	-				-0.1
1,532,443	-				+0.1
1,532,443	-				+1.5
1,532,443	-				-0.7
1,532,448	+				-0.3
1,532,466	-				+0.7
1,532,467	+				-2.3
1,532,467	+				+0.2
1,532,467	+				+1.8
1,532,467	+				-0.4
1,532,467	+				-0.3
1,532,467	+				-2.1
1,532,467	+				-0.1
1,532,468	-				-0.5
1,532,494	+				+0.5
1,532,494	+				-1.5
1,532,494	+				+0.2
1,532,495	-				+0.8
1,532,495	-				-0.5
1,532,495	-				-0.3
1,532,542	+				+0.5
1,532,543	-				+2.2
1,532,543	-				-0.5
1,532,550	-				-0.5
1,532,550	-				+0.0
1,532,566	-				-0.2
1,532,614	+				+0.7
1,532,615	-				-0.5
1,532,615	-				-1.5
1,532,697	+				-0.8
1,532,720	+				-0.5
1,532,737	-				-1.8
1,532,787	-				-0.2
1,532,799	-				-1.1
1,532,928	+				+0.8
1,532,928	+				+1.5
1,532,929	-				+0.2
1,532,939	+				+0.0
1,532,939	+				+0.9
1,532,940	-				+1.4
1,532,940	-				+0.9
1,532,940	-				+0.6
1,532,940	-				-1.5
1,532,941	+				+0.8
1,532,941	+				-0.1
1,532,941	+				-1.8
1,532,941	+				-0.5
1,532,942	-				+0.7
1,532,942	-				+1.5
1,532,942	-				+2.3
1,532,943	+				-0.1
1,532,943	+				+1.1
1,532,944	-				+2.2
1,532,944	-				+0.8
1,532,944	-				-1.8
1,532,970	-				-0.5
1,532,970	-				-0.2
1,532,986	+				-3.0
1,532,986	+				+1.0
1,532,986	+				+0.5
1,532,986	+				+1.6
1,532,986	+				-1.3
1,532,986	+				+0.2
1,532,986	+				-1.3
1,532,987	-				+0.3
1,532,987	-				+0.9
1,532,987	-				-0.8
1,532,987	-				-0.3
1,532,987	-				+0.2
1,532,987	-				-0.8
1,532,987	-				+0.1
1,532,999	-				+0.8
1,533,001	+				-0.2
1,533,001	+				-1.5
1,533,001	+				-1.1
1,533,001	+				-2.3
1,533,001	+				-0.9
1,533,002	-				+1.4
1,533,010	+				+0.6
1,533,011	-				-0.8
1,533,011	-				-1.1
1,533,038	+				+0.8
1,533,038	+				+1.3
1,533,039	-				-0.6
1,533,049	+		DZA65_RS07355	0.10	-0.5
1,533,049	+		DZA65_RS07355	0.10	+0.7
1,533,050	-		DZA65_RS07355	0.11	+3.3
1,533,050	-		DZA65_RS07355	0.11	+0.1
1,533,143	+		DZA65_RS07355	0.35	+0.9
1,533,143	+		DZA65_RS07355	0.35	+0.3
1,533,143	+		DZA65_RS07355	0.35	+0.6
1,533,143	+		DZA65_RS07355	0.35	+0.1
1,533,143	+		DZA65_RS07355	0.35	-0.4
1,533,209	+		DZA65_RS07355	0.52	+0.5
1,533,209	+		DZA65_RS07355	0.52	-2.1
1,533,209	+		DZA65_RS07355	0.52	+2.8
1,533,209	+		DZA65_RS07355	0.52	-0.5
1,533,209	+		DZA65_RS07355	0.52	-0.0
1,533,210	-		DZA65_RS07355	0.52	+0.9
1,533,210	-		DZA65_RS07355	0.52	+0.5
1,533,210	-		DZA65_RS07355	0.52	-1.5
1,533,213	+		DZA65_RS07355	0.53	-2.1
1,533,213	+		DZA65_RS07355	0.53	+0.3
1,533,213	+		DZA65_RS07355	0.53	+0.6
1,533,214	-		DZA65_RS07355	0.53	-0.8
1,533,214	-		DZA65_RS07355	0.53	+1.3
1,533,214	-		DZA65_RS07355	0.53	-0.1
1,533,214	-		DZA65_RS07355	0.53	+2.1
1,533,214	-		DZA65_RS07355	0.53	-1.5
1,533,324	+				-1.1
1,533,324	+		DZA65_RS07355	0.81	-0.0
1,533,324	+		DZA65_RS07355	0.81	+0.2
1,533,335	+		DZA65_RS07355	0.84	+1.2
1,533,336	-		DZA65_RS07355	0.84	+0.9
1,533,424	+				-0.2
1,533,424	+				-0.5
1,533,425	-				+2.2
1,533,425	-				+0.2
1,533,448	-				-1.3
1,533,462	-				+0.0
1,533,481	+				-0.3
1,533,481	+				-0.3
1,533,524	+				-0.9
1,533,536	-		DZA65_RS07360	0.11	+1.1
1,533,536	-		DZA65_RS07360	0.11	-1.7
1,533,609	+		DZA65_RS07360	0.22	+0.1
1,533,610	-		DZA65_RS07360	0.22	-2.7
1,533,610	-		DZA65_RS07360	0.22	+0.6
1,533,664	+		DZA65_RS07360	0.30	+0.9
1,533,665	-		DZA65_RS07360	0.30	+0.4
1,533,665	-		DZA65_RS07360	0.30	-0.5
1,533,665	-		DZA65_RS07360	0.30	+2.2
1,533,665	-		DZA65_RS07360	0.30	+0.0
1,533,679	-		DZA65_RS07360	0.32	+1.7
1,533,762	+		DZA65_RS07360	0.44	-1.4
1,533,762	+		DZA65_RS07360	0.44	-0.9
1,533,762	+		DZA65_RS07360	0.44	-0.2
1,533,762	+				+0.5
1,533,762	+		DZA65_RS07360	0.44	-0.8
1,533,762	+		DZA65_RS07360	0.44	+0.5
1,533,763	-		DZA65_RS07360	0.44	-0.6
1,533,763	-		DZA65_RS07360	0.44	-0.5
1,533,911	+		DZA65_RS07360	0.66	+0.1
1,533,911	+		DZA65_RS07360	0.66	-0.8
1,533,912	-		DZA65_RS07360	0.66	-0.1
1,533,954	+		DZA65_RS07360	0.72	-0.9
1,534,009	-		DZA65_RS07360	0.80	+0.2
1,534,119	+				-0.2
1,534,119	+				+0.4
1,534,125	+				-0.6
1,534,125	+				-0.3
1,534,125	+				+2.1
1,534,125	+				-1.2
1,534,125	+				-0.5
1,534,126	-				+0.5
1,534,126	-				-2.7
1,534,126	-				+0.1
1,534,126	-				-0.7
1,534,126	-				-2.1
1,534,131	+				-0.5
1,534,157	+				-0.9
1,534,158	-				-0.0
1,534,394	+		DZA65_RS07365	0.28	-0.3
1,534,395	-		DZA65_RS07365	0.28	-2.1
1,534,395	-		DZA65_RS07365	0.28	+0.7