Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07095

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS07085 and DZA65_RS07090 are separated by 19 nucleotidesDZA65_RS07090 and DZA65_RS07095 are separated by 16 nucleotidesDZA65_RS07095 and DZA65_RS07100 are separated by 302 nucleotides DZA65_RS07085: DZA65_RS07085 - polysaccharide export protein, at 1,470,097 to 1,471,233 _RS07085 DZA65_RS07090: DZA65_RS07090 - protein-tyrosine-phosphatase, at 1,471,253 to 1,471,687 _RS07090 DZA65_RS07095: DZA65_RS07095 - tyrosine-protein kinase Wzc, at 1,471,704 to 1,473,884 _RS07095 DZA65_RS07100: DZA65_RS07100 - undecaprenyl-phosphate galactose phosphotransferase WbaP, at 1,474,187 to 1,475,602 _RS07100 Position (kb) 1471 1472 1473 1474Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1470.766 kb on - strand, within DZA65_RS07085at 1470.766 kb on - strand, within DZA65_RS07085at 1470.766 kb on - strand, within DZA65_RS07085at 1470.766 kb on - strand, within DZA65_RS07085at 1471.043 kb on - strand, within DZA65_RS07085at 1471.043 kb on - strand, within DZA65_RS07085at 1471.043 kb on - strand, within DZA65_RS07085at 1471.054 kb on - strand, within DZA65_RS07085at 1471.118 kb on - strand, within DZA65_RS07085at 1471.118 kb on - strand, within DZA65_RS07085at 1471.118 kb on - strand, within DZA65_RS07085at 1471.118 kb on - strand, within DZA65_RS07085at 1471.118 kb on - strand, within DZA65_RS07085at 1471.118 kb on - strand, within DZA65_RS07085at 1471.118 kb on - strand, within DZA65_RS07085at 1471.118 kb on - strand, within DZA65_RS07085at 1471.118 kb on - strand, within DZA65_RS07085at 1471.118 kb on - strand, within DZA65_RS07085at 1471.222 kb on - strandat 1471.232 kb on - strandat 1471.265 kb on - strandat 1471.265 kb on - strandat 1471.265 kb on - strandat 1471.274 kb on - strandat 1471.289 kb on - strandat 1471.289 kb on - strandat 1471.289 kb on - strandat 1471.321 kb on - strand, within DZA65_RS07090at 1471.330 kb on - strand, within DZA65_RS07090at 1471.577 kb on - strand, within DZA65_RS07090at 1471.635 kb on - strand, within DZA65_RS07090at 1471.635 kb on - strand, within DZA65_RS07090at 1471.700 kb on + strandat 1471.701 kb on - strandat 1471.701 kb on - strandat 1471.701 kb on - strandat 1471.772 kb on - strandat 1471.809 kb on - strandat 1471.845 kb on + strandat 1471.846 kb on - strandat 1471.846 kb on - strandat 1471.846 kb on - strandat 1471.846 kb on - strandat 1471.846 kb on - strandat 1471.847 kb on + strandat 1471.848 kb on - strandat 1471.848 kb on - strandat 1471.848 kb on - strandat 1471.870 kb on - strandat 1472.006 kb on + strand, within DZA65_RS07095at 1472.226 kb on - strand, within DZA65_RS07095at 1472.226 kb on - strand, within DZA65_RS07095at 1472.226 kb on - strand, within DZA65_RS07095at 1472.264 kb on - strand, within DZA65_RS07095at 1472.300 kb on - strand, within DZA65_RS07095at 1472.300 kb on - strand, within DZA65_RS07095at 1472.345 kb on - strand, within DZA65_RS07095at 1472.345 kb on - strand, within DZA65_RS07095at 1472.345 kb on - strand, within DZA65_RS07095at 1472.433 kb on - strand, within DZA65_RS07095at 1472.445 kb on - strand, within DZA65_RS07095at 1472.461 kb on - strand, within DZA65_RS07095at 1472.461 kb on - strand, within DZA65_RS07095at 1472.461 kb on - strand, within DZA65_RS07095at 1472.640 kb on - strand, within DZA65_RS07095at 1472.664 kb on - strand, within DZA65_RS07095at 1472.664 kb on - strand, within DZA65_RS07095at 1472.664 kb on - strand, within DZA65_RS07095at 1472.769 kb on - strand, within DZA65_RS07095at 1472.796 kb on - strand, within DZA65_RS07095at 1472.796 kb on - strand, within DZA65_RS07095at 1472.796 kb on - strand, within DZA65_RS07095at 1472.859 kb on + strand, within DZA65_RS07095at 1472.860 kb on - strand, within DZA65_RS07095at 1472.860 kb on - strand, within DZA65_RS07095at 1472.860 kb on - strand, within DZA65_RS07095at 1472.860 kb on - strand, within DZA65_RS07095at 1472.860 kb on - strand, within DZA65_RS07095at 1472.860 kb on - strandat 1472.870 kb on - strandat 1472.877 kb on - strand, within DZA65_RS07095at 1472.877 kb on - strand, within DZA65_RS07095at 1472.877 kb on - strand, within DZA65_RS07095at 1472.877 kb on - strand, within DZA65_RS07095at 1472.897 kb on + strand, within DZA65_RS07095at 1472.907 kb on - strand, within DZA65_RS07095at 1472.954 kb on - strand, within DZA65_RS07095at 1472.954 kb on - strand, within DZA65_RS07095at 1472.954 kb on - strand, within DZA65_RS07095at 1472.954 kb on - strand, within DZA65_RS07095at 1472.989 kb on + strand, within DZA65_RS07095at 1472.990 kb on - strandat 1473.093 kb on - strand, within DZA65_RS07095at 1473.095 kb on + strandat 1473.096 kb on - strand, within DZA65_RS07095at 1473.096 kb on - strand, within DZA65_RS07095at 1473.096 kb on - strand, within DZA65_RS07095at 1473.096 kb on - strand, within DZA65_RS07095at 1473.422 kb on + strand, within DZA65_RS07095at 1473.422 kb on + strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.423 kb on - strand, within DZA65_RS07095at 1473.435 kb on - strand, within DZA65_RS07095at 1473.435 kb on - strand, within DZA65_RS07095at 1473.444 kb on - strand, within DZA65_RS07095at 1473.508 kb on + strand, within DZA65_RS07095at 1473.509 kb on - strand, within DZA65_RS07095at 1473.516 kb on - strand, within DZA65_RS07095at 1473.516 kb on - strand, within DZA65_RS07095at 1473.820 kb on - strandat 1473.822 kb on + strandat 1473.822 kb on + strandat 1473.823 kb on - strandat 1473.823 kb on - strandat 1473.829 kb on - strandat 1473.843 kb on + strandat 1473.844 kb on - strandat 1473.881 kb on - strandat 1473.963 kb on - strandat 1474.153 kb on - strandat 1474.186 kb on + strandat 1474.187 kb on - strandat 1474.221 kb on + strandat 1474.222 kb on - strandat 1474.222 kb on - strandat 1474.224 kb on + strandat 1474.252 kb on + strandat 1474.252 kb on + strandat 1474.265 kb on + strandat 1474.270 kb on - strandat 1474.270 kb on - strandat 1474.281 kb on + strandat 1474.282 kb on - strandat 1474.497 kb on - strand, within DZA65_RS07100at 1474.580 kb on - strand, within DZA65_RS07100at 1474.580 kb on - strand, within DZA65_RS07100at 1474.583 kb on - strand, within DZA65_RS07100at 1474.612 kb on + strand, within DZA65_RS07100at 1474.669 kb on + strand, within DZA65_RS07100at 1474.669 kb on + strand, within DZA65_RS07100at 1474.718 kb on - strand, within DZA65_RS07100at 1474.755 kb on + strand, within DZA65_RS07100at 1474.755 kb on + strand, within DZA65_RS07100at 1474.755 kb on + strand, within DZA65_RS07100at 1474.755 kb on + strand, within DZA65_RS07100at 1474.755 kb on + strand, within DZA65_RS07100at 1474.756 kb on - strand, within DZA65_RS07100at 1474.756 kb on - strand, within DZA65_RS07100at 1474.756 kb on - strand, within DZA65_RS07100at 1474.756 kb on - strand, within DZA65_RS07100at 1474.757 kb on + strand, within DZA65_RS07100at 1474.757 kb on + strand, within DZA65_RS07100at 1474.757 kb on + strand, within DZA65_RS07100at 1474.758 kb on - strand, within DZA65_RS07100at 1474.758 kb on - strand, within DZA65_RS07100at 1474.773 kb on + strand, within DZA65_RS07100at 1474.774 kb on - strand, within DZA65_RS07100at 1474.780 kb on + strand, within DZA65_RS07100at 1474.862 kb on - strand, within DZA65_RS07100at 1474.862 kb on - strand, within DZA65_RS07100at 1474.862 kb on - strand, within DZA65_RS07100

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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1,470,766 - DZA65_RS07085 0.59 +0.5
1,470,766 - DZA65_RS07085 0.59 +0.6
1,470,766 - DZA65_RS07085 0.59 -0.5
1,470,766 - DZA65_RS07085 0.59 -0.9
1,471,043 - DZA65_RS07085 0.83 +0.3
1,471,043 - DZA65_RS07085 0.83 -2.1
1,471,043 - DZA65_RS07085 0.83 -1.8
1,471,054 - DZA65_RS07085 0.84 +0.5
1,471,118 - DZA65_RS07085 0.90 -1.1
1,471,118 - DZA65_RS07085 0.90 +1.1
1,471,118 - DZA65_RS07085 0.90 +0.5
1,471,118 - DZA65_RS07085 0.90 +2.2
1,471,118 - DZA65_RS07085 0.90 +0.5
1,471,118 - DZA65_RS07085 0.90 -0.2
1,471,118 - DZA65_RS07085 0.90 +0.1
1,471,118 - DZA65_RS07085 0.90 -0.7
1,471,118 - DZA65_RS07085 0.90 +1.5
1,471,118 - DZA65_RS07085 0.90 +0.5
1,471,222 - -0.8
1,471,232 - +0.5
1,471,265 - -1.4
1,471,265 - -1.6
1,471,265 - +0.0
1,471,274 - +0.8
1,471,289 - +1.2
1,471,289 - -0.1
1,471,289 - +1.3
1,471,321 - DZA65_RS07090 0.16 +3.1
1,471,330 - DZA65_RS07090 0.18 +1.0
1,471,577 - DZA65_RS07090 0.74 -0.3
1,471,635 - DZA65_RS07090 0.88 -0.1
1,471,635 - DZA65_RS07090 0.88 +0.5
1,471,700 + -1.8
1,471,701 - -0.2
1,471,701 - -1.1
1,471,701 - +1.1
1,471,772 - +0.8
1,471,809 - +1.8
1,471,845 + +0.2
1,471,846 - +0.5
1,471,846 - +0.7
1,471,846 - -2.2
1,471,846 - -1.8
1,471,846 - -0.9
1,471,847 + +0.4
1,471,848 - +0.1
1,471,848 - -1.3
1,471,848 - -0.5
1,471,870 - +0.7
1,472,006 + DZA65_RS07095 0.14 -0.6
1,472,226 - DZA65_RS07095 0.24 +0.6
1,472,226 - DZA65_RS07095 0.24 -0.6
1,472,226 - DZA65_RS07095 0.24 +0.3
1,472,264 - DZA65_RS07095 0.26 +1.2
1,472,300 - DZA65_RS07095 0.27 +0.3
1,472,300 - DZA65_RS07095 0.27 +0.3
1,472,345 - DZA65_RS07095 0.29 -1.1
1,472,345 - DZA65_RS07095 0.29 +0.2
1,472,345 - DZA65_RS07095 0.29 -1.5
1,472,433 - DZA65_RS07095 0.33 +0.4
1,472,445 - DZA65_RS07095 0.34 -0.6
1,472,461 - DZA65_RS07095 0.35 -2.6
1,472,461 - DZA65_RS07095 0.35 +2.3
1,472,461 - DZA65_RS07095 0.35 +0.9
1,472,640 - DZA65_RS07095 0.43 +0.6
1,472,664 - DZA65_RS07095 0.44 +1.1
1,472,664 - DZA65_RS07095 0.44 +0.4
1,472,664 - DZA65_RS07095 0.44 -0.0
1,472,769 - DZA65_RS07095 0.49 +0.1
1,472,796 - DZA65_RS07095 0.50 +1.0
1,472,796 - DZA65_RS07095 0.50 +1.3
1,472,796 - DZA65_RS07095 0.50 -1.5
1,472,859 + DZA65_RS07095 0.53 +0.0
1,472,860 - DZA65_RS07095 0.53 -1.7
1,472,860 - DZA65_RS07095 0.53 +1.2
1,472,860 - DZA65_RS07095 0.53 +0.3
1,472,860 - DZA65_RS07095 0.53 +1.5
1,472,860 - DZA65_RS07095 0.53 -0.1
1,472,860 - -0.5
1,472,870 - +1.5
1,472,877 - DZA65_RS07095 0.54 +0.4
1,472,877 - DZA65_RS07095 0.54 +1.2
1,472,877 - DZA65_RS07095 0.54 +0.5
1,472,877 - DZA65_RS07095 0.54 +1.0
1,472,897 + DZA65_RS07095 0.55 -0.5
1,472,907 - DZA65_RS07095 0.55 +1.9
1,472,954 - DZA65_RS07095 0.57 -0.5
1,472,954 - DZA65_RS07095 0.57 +0.5
1,472,954 - DZA65_RS07095 0.57 +2.5
1,472,954 - DZA65_RS07095 0.57 +0.5
1,472,989 + DZA65_RS07095 0.59 -0.5
1,472,990 - -0.5
1,473,093 - DZA65_RS07095 0.64 -2.3
1,473,095 + +0.5
1,473,096 - DZA65_RS07095 0.64 -1.7
1,473,096 - DZA65_RS07095 0.64 +0.1
1,473,096 - DZA65_RS07095 0.64 +1.5
1,473,096 - DZA65_RS07095 0.64 +1.3
1,473,422 + DZA65_RS07095 0.79 +0.3
1,473,422 + DZA65_RS07095 0.79 -0.8
1,473,423 - DZA65_RS07095 0.79 +0.7
1,473,423 - DZA65_RS07095 0.79 +0.5
1,473,423 - DZA65_RS07095 0.79 +2.3
1,473,423 - DZA65_RS07095 0.79 +0.2
1,473,423 - DZA65_RS07095 0.79 +0.4
1,473,423 - DZA65_RS07095 0.79 +0.0
1,473,423 - DZA65_RS07095 0.79 +0.1
1,473,423 - DZA65_RS07095 0.79 -0.5
1,473,423 - DZA65_RS07095 0.79 +0.9
1,473,423 - DZA65_RS07095 0.79 +0.5
1,473,423 - DZA65_RS07095 0.79 -2.2
1,473,423 - DZA65_RS07095 0.79 +0.9
1,473,423 - DZA65_RS07095 0.79 +0.4
1,473,423 - DZA65_RS07095 0.79 -1.3
1,473,423 - DZA65_RS07095 0.79 +1.0
1,473,423 - DZA65_RS07095 0.79 +0.5
1,473,423 - DZA65_RS07095 0.79 +0.1
1,473,423 - DZA65_RS07095 0.79 +1.3
1,473,423 - DZA65_RS07095 0.79 -0.5
1,473,423 - DZA65_RS07095 0.79 +2.1
1,473,423 - DZA65_RS07095 0.79 +0.3
1,473,435 - DZA65_RS07095 0.79 -0.1
1,473,435 - DZA65_RS07095 0.79 -1.3
1,473,444 - DZA65_RS07095 0.80 +0.3
1,473,508 + DZA65_RS07095 0.83 -1.3
1,473,509 - DZA65_RS07095 0.83 +0.5
1,473,516 - DZA65_RS07095 0.83 -0.6
1,473,516 - DZA65_RS07095 0.83 +0.1
1,473,820 - +0.5
1,473,822 + -0.5
1,473,822 + -3.3
1,473,823 - +1.9
1,473,823 - +0.3
1,473,829 - +0.3
1,473,843 + -0.3
1,473,844 - +1.2
1,473,881 - +0.7
1,473,963 - +0.9
1,474,153 - +0.5
1,474,186 + -1.5
1,474,187 - +1.5
1,474,221 + +1.7
1,474,222 - -2.5
1,474,222 - +0.5
1,474,224 + -0.2
1,474,252 + +1.0
1,474,252 + +0.6
1,474,265 + -0.6
1,474,270 - +0.1
1,474,270 - -2.6
1,474,281 + +0.1
1,474,282 - +1.5
1,474,497 - DZA65_RS07100 0.22 +1.5
1,474,580 - DZA65_RS07100 0.28 -2.1
1,474,580 - DZA65_RS07100 0.28 +0.5
1,474,583 - DZA65_RS07100 0.28 +0.5
1,474,612 + DZA65_RS07100 0.30 +1.4
1,474,669 + DZA65_RS07100 0.34 -1.3
1,474,669 + DZA65_RS07100 0.34 +0.5
1,474,718 - DZA65_RS07100 0.38 -0.7
1,474,755 + DZA65_RS07100 0.40 +1.0
1,474,755 + DZA65_RS07100 0.40 -0.5
1,474,755 + DZA65_RS07100 0.40 +2.1
1,474,755 + DZA65_RS07100 0.40 +1.0
1,474,755 + DZA65_RS07100 0.40 +2.9
1,474,756 - DZA65_RS07100 0.40 -0.4
1,474,756 - DZA65_RS07100 0.40 +0.2
1,474,756 - DZA65_RS07100 0.40 -0.9
1,474,756 - DZA65_RS07100 0.40 -0.2
1,474,757 + DZA65_RS07100 0.40 -0.1
1,474,757 + DZA65_RS07100 0.40 +1.4
1,474,757 + DZA65_RS07100 0.40 +0.1
1,474,758 - DZA65_RS07100 0.40 +1.3
1,474,758 - DZA65_RS07100 0.40 +0.9
1,474,773 + DZA65_RS07100 0.41 -1.8
1,474,774 - DZA65_RS07100 0.41 +0.9
1,474,780 + DZA65_RS07100 0.42 -1.5
1,474,862 - DZA65_RS07100 0.48 -1.8
1,474,862 - DZA65_RS07100 0.48 +1.0
1,474,862 - DZA65_RS07100 0.48 +0.2

Or see this region's nucleotide sequence