Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06195

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,282,272	+		DZA65_RS06190	0.79	+0.3
1,282,272	+		DZA65_RS06190	0.79	+0.6
1,282,272	+		DZA65_RS06190	0.79	+0.6
1,282,273	-		DZA65_RS06190	0.79	-1.4
1,282,273	-		DZA65_RS06190	0.79	-2.2
1,282,273	-		DZA65_RS06190	0.79	-0.1
1,282,273	-		DZA65_RS06190	0.79	-0.8
1,282,273	-		DZA65_RS06190	0.79	-0.8
1,282,273	-		DZA65_RS06190	0.79	+1.2
1,282,305	+		DZA65_RS06190	0.81	+0.2
1,282,305	+		DZA65_RS06190	0.81	-0.0
1,282,305	+		DZA65_RS06190	0.81	+1.6
1,282,306	-		DZA65_RS06190	0.81	-2.5
1,282,306	-		DZA65_RS06190	0.81	-1.5
1,282,306	-		DZA65_RS06190	0.81	+0.6
1,282,306	-		DZA65_RS06190	0.81	+0.1
1,282,306	-		DZA65_RS06190	0.81	+0.7
1,282,306	-		DZA65_RS06190	0.81	+0.2
1,282,306	-		DZA65_RS06190	0.81	+1.2
1,282,325	+		DZA65_RS06190	0.82	+0.9
1,282,440	+		DZA65_RS06190	0.89	-1.9
1,282,440	+		DZA65_RS06190	0.89	+1.9
1,282,441	-		DZA65_RS06190	0.89	-0.6
1,282,441	-		DZA65_RS06190	0.89	-1.2
1,282,445	+		DZA65_RS06190	0.89	+1.2
1,282,446	-		DZA65_RS06190	0.89	+0.3
1,282,446	-		DZA65_RS06190	0.89	-0.6
1,282,451	+		DZA65_RS06190	0.90	-0.4
1,282,512	+				-0.2
1,282,512	+				-1.4
1,282,512	+				+2.0
1,282,513	-				+0.8
1,282,513	-				+0.1
1,282,513	-				+0.9
1,282,554	+				-0.0
1,282,591	-				-1.4
1,282,615	-				+1.6
1,282,620	+				-0.5
1,282,621	-				+0.4
1,282,631	+				-0.4
1,282,631	+				+0.7
1,282,671	-				+1.0
1,282,700	+				+1.8
1,282,700	+				+2.1
1,282,700	+				-0.1
1,282,700	+				+0.6
1,282,701	-				-1.4
1,282,708	+				+1.0
1,282,709	-				-1.7
1,282,709	-				-0.1
1,282,709	-				+0.3
1,282,720	-				+0.6
1,282,720	-				-0.2
1,282,822	+				+0.3
1,282,831	+				-0.1
1,282,833	+				+0.9
1,282,833	+				-1.9
1,282,833	+				-0.6
1,282,833	+				+0.2
1,282,853	-				+1.6
1,282,916	-				-1.0
1,282,919	-				+0.6
1,282,919	-				-0.3
1,282,956	+				+1.9
1,282,957	-				-3.3
1,282,957	-				-0.4
1,283,034	+				+0.8
1,283,169	-				+0.8
1,283,208	-				-0.8
1,283,263	+				+0.7
1,283,263	+				-0.1
1,283,264	-				+0.3
1,283,267	+				-2.4
1,283,267	+				+0.1
1,283,267	+				-0.4
1,283,267	+				-0.2
1,283,267	+				-0.8
1,283,267	+				+1.1
1,283,268	-				+1.8
1,283,309	+		DZA65_RS06195	0.17	-2.3
1,283,309	+		DZA65_RS06195	0.17	+0.4
1,283,310	-		DZA65_RS06195	0.17	-1.4
1,283,310	-		DZA65_RS06195	0.17	+0.5
1,283,403	+		DZA65_RS06195	0.41	+0.6
1,283,403	+		DZA65_RS06195	0.41	+0.8
1,283,404	-		DZA65_RS06195	0.41	+0.3
1,283,426	+		DZA65_RS06195	0.46	+0.5
1,283,427	-		DZA65_RS06195	0.47	+0.6
1,283,453	+		DZA65_RS06195	0.53	-0.4
1,283,454	-		DZA65_RS06195	0.53	-0.1
1,283,457	-		DZA65_RS06195	0.54	+0.8
1,283,571	+		DZA65_RS06195	0.83	-0.4
1,283,597	+		DZA65_RS06195	0.89	+2.1
1,283,600	+				-1.4
1,283,601	-				-0.7
1,283,642	-				+1.1
1,283,670	+				-0.4
1,283,688	+				-0.1
1,283,700	+				-0.7
1,283,775	+				+1.2
1,283,823	+				+2.0
1,283,823	+				-1.4
1,283,823	+				+0.2
1,283,823	+				-0.2
1,283,832	+				+1.2
1,283,834	+				-0.4
1,283,834	+				-0.1
1,283,834	+				-1.3
1,283,835	-				+0.1
1,283,836	+				-1.7
1,283,836	+				+0.5
1,283,836	+				+1.1
1,283,836	+				-0.0
1,283,836	+				+0.8
1,283,837	-				+0.3
1,283,837	-				-0.4
1,283,837	-				-0.5
1,283,837	-				+0.5
1,283,837	-				-0.8
1,283,837	-				+2.5
1,283,837	-				-2.9
1,283,837	-				-0.7
1,283,837	-				-0.1
1,283,837	-				+0.2
1,283,863	+				+0.2
1,283,863	+				+0.5
1,283,864	-				+1.0
1,283,905	-				+0.9
1,283,907	+				+0.3
1,283,908	-				+0.1
1,283,908	-				+1.0
1,283,937	+				+0.3
1,283,938	-				-0.9
1,283,938	-				-0.4
1,283,938	-				+0.6
1,283,988	-				-0.9
1,284,030	+				-0.7
1,284,033	-				-3.1
1,284,040	-				-1.9
1,284,040	-				-0.4
1,284,044	+				-1.9
1,284,048	+				-1.4
1,284,058	-				-2.5
1,284,084	-				+1.3
1,284,124	+				-0.7
1,284,124	+				+1.5
1,284,125	-				+0.1
1,284,125	-				+0.6
1,284,125	-				+0.3
1,284,125	-				+0.5
1,284,132	+				+1.1
1,284,157	-				+1.3
1,284,157	-				-1.4
1,284,187	+				+0.1
1,284,187	+				+0.2
1,284,188	-				-0.4
1,284,188	-				-1.6
1,284,190	+				+0.6
1,284,190	+				+0.9
1,284,193	+				+0.0
1,284,194	-				-0.2
1,284,194	-				+1.2
1,284,224	+				-0.6
1,284,224	+				-0.4
1,284,276	+				-2.4
1,284,276	+				-0.8
1,284,276	+				-0.9
1,284,277	-				-0.0
1,284,277	-				+0.4
1,284,277	-				-1.7
1,284,307	-				+0.9
1,284,310	-		DZA65_RS06205	0.10	+0.5
1,284,316	+		DZA65_RS06205	0.11	+0.6
1,284,414	-		DZA65_RS06205	0.17	-0.4
1,284,414	-		DZA65_RS06205	0.17	-0.4
1,284,426	+		DZA65_RS06205	0.17	-2.7
1,284,426	+		DZA65_RS06205	0.17	+0.6
1,284,447	+		DZA65_RS06205	0.19	-0.7
1,284,447	+		DZA65_RS06205	0.19	-0.8
1,284,448	-		DZA65_RS06205	0.19	-0.5
1,284,448	-		DZA65_RS06205	0.19	+0.3
1,284,459	+		DZA65_RS06205	0.20	+0.2
1,284,460	-		DZA65_RS06205	0.20	-1.9
1,284,533	-		DZA65_RS06205	0.24	-1.4
1,284,560	+		DZA65_RS06205	0.26	+0.1
1,284,561	-				+0.1
1,284,561	-		DZA65_RS06205	0.26	+1.7
1,284,562	+		DZA65_RS06205	0.26	-0.4
1,284,562	+		DZA65_RS06205	0.26	+1.4
1,284,562	+		DZA65_RS06205	0.26	-1.7
1,284,562	+		DZA65_RS06205	0.26	+0.2
1,284,562	+		DZA65_RS06205	0.26	+0.3
1,284,562	+		DZA65_RS06205	0.26	+0.3
1,284,563	-		DZA65_RS06205	0.26	+0.4
1,284,563	-		DZA65_RS06205	0.26	-1.4
1,284,563	-		DZA65_RS06205	0.26	+0.5
1,284,563	-		DZA65_RS06205	0.26	-0.5
1,284,563	-		DZA65_RS06205	0.26	-0.7
1,284,569	+		DZA65_RS06205	0.26	+0.1
1,284,607	+		DZA65_RS06205	0.29	-1.9
1,284,608	-		DZA65_RS06205	0.29	+0.3
1,284,618	-		DZA65_RS06205	0.30	+1.1
1,284,618	-		DZA65_RS06205	0.30	-0.7
1,284,618	-		DZA65_RS06205	0.30	-0.6
1,284,618	-		DZA65_RS06205	0.30	+2.0
1,284,618	-		DZA65_RS06205	0.30	+0.7
1,284,619	+		DZA65_RS06205	0.30	+1.3
1,284,619	+		DZA65_RS06205	0.30	-0.3
1,284,619	+		DZA65_RS06205	0.30	-0.2
1,284,619	+		DZA65_RS06205	0.30	-0.9
1,284,620	-		DZA65_RS06205	0.30	+0.2
1,284,620	-		DZA65_RS06205	0.30	+1.8
1,284,629	+		DZA65_RS06205	0.30	-0.2
1,284,629	+		DZA65_RS06205	0.30	-0.2
1,284,630	-		DZA65_RS06205	0.30	+0.6