Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06000

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,236,789	+				-0.2
1,236,789	+				-1.7
1,236,789	+				+1.4
1,236,789	+				+0.4
1,236,790	-				-0.6
1,236,825	+				-0.7
1,236,825	+				-0.1
1,236,826	-				-0.7
1,236,826	-				+0.6
1,236,876	+				-1.2
1,236,901	-				-0.9
1,236,901	-				-1.5
1,236,909	+				-1.1
1,236,909	+				+1.1
1,236,909	+				+0.3
1,236,909	+				-0.3
1,236,909	+				+1.0
1,236,910	-				-0.4
1,236,910	-				-1.4
1,236,910	-				+0.4
1,236,910	-				-0.1
1,236,910	-				-1.1
1,236,910	-				+0.2
1,236,910	-				-0.7
1,237,007	+		DZA65_RS05995	0.21	+0.4
1,237,009	+		DZA65_RS05995	0.22	-2.2
1,237,009	+		DZA65_RS05995	0.22	-0.1
1,237,009	+		DZA65_RS05995	0.22	+0.2
1,237,010	-		DZA65_RS05995	0.22	+1.0
1,237,010	-		DZA65_RS05995	0.22	-1.5
1,237,010	-		DZA65_RS05995	0.22	+2.6
1,237,010	-		DZA65_RS05995	0.22	-1.1
1,237,010	-		DZA65_RS05995	0.22	-0.4
1,237,010	-		DZA65_RS05995	0.22	-1.4
1,237,014	+		DZA65_RS05995	0.23	+0.2
1,237,014	+		DZA65_RS05995	0.23	-0.9
1,237,014	+		DZA65_RS05995	0.23	+0.8
1,237,015	-		DZA65_RS05995	0.23	-0.4
1,237,015	-				-0.9
1,237,016	+		DZA65_RS05995	0.23	+0.4
1,237,016	+		DZA65_RS05995	0.23	-0.5
1,237,016	+		DZA65_RS05995	0.23	-0.9
1,237,016	+		DZA65_RS05995	0.23	+0.6
1,237,016	+		DZA65_RS05995	0.23	-0.4
1,237,016	+		DZA65_RS05995	0.23	+1.0
1,237,016	+		DZA65_RS05995	0.23	+0.4
1,237,016	+		DZA65_RS05995	0.23	-1.5
1,237,016	+		DZA65_RS05995	0.23	+0.3
1,237,016	+		DZA65_RS05995	0.23	+0.6
1,237,016	+		DZA65_RS05995	0.23	-0.8
1,237,016	+		DZA65_RS05995	0.23	+1.1
1,237,016	+		DZA65_RS05995	0.23	+0.9
1,237,016	+		DZA65_RS05995	0.23	+2.3
1,237,016	+		DZA65_RS05995	0.23	+3.5
1,237,016	+		DZA65_RS05995	0.23	+1.6
1,237,017	-		DZA65_RS05995	0.23	-0.9
1,237,017	-		DZA65_RS05995	0.23	-1.2
1,237,017	-		DZA65_RS05995	0.23	+2.5
1,237,017	-		DZA65_RS05995	0.23	+0.7
1,237,017	-		DZA65_RS05995	0.23	-1.5
1,237,017	-		DZA65_RS05995	0.23	+1.2
1,237,017	-		DZA65_RS05995	0.23	-0.1
1,237,017	-		DZA65_RS05995	0.23	-0.2
1,237,077	+		DZA65_RS05995	0.34	+0.5
1,237,092	+		DZA65_RS05995	0.36	+0.0
1,237,093	-		DZA65_RS05995	0.36	-0.4
1,237,184	+		DZA65_RS05995	0.52	+1.1
1,237,184	+		DZA65_RS05995	0.52	+1.3
1,237,185	-		DZA65_RS05995	0.52	-0.7
1,237,185	-		DZA65_RS05995	0.52	+0.0
1,237,185	-		DZA65_RS05995	0.52	+2.6
1,237,185	-		DZA65_RS05995	0.52	+1.0
1,237,259	-		DZA65_RS05995	0.65	+0.6
1,237,342	+		DZA65_RS05995	0.79	-0.7
1,237,401	+		DZA65_RS05995	0.89	+1.5
1,237,401	+		DZA65_RS05995	0.89	+1.1
1,237,401	+		DZA65_RS05995	0.89	+1.0
1,237,402	-		DZA65_RS05995	0.90	+1.4
1,237,456	+				-0.1
1,237,497	+				-2.2
1,237,503	+				+1.6
1,237,503	+				+1.9
1,237,503	+				+0.5
1,237,503	+				-1.7
1,237,504	-				-0.4
1,237,504	-				+1.1
1,237,504	-				-1.1
1,237,504	-				+0.6
1,237,504	-				+1.1
1,237,504	-				+0.2
1,237,504	-				-2.3
1,237,504	-				+0.3
1,237,516	+				+1.2
1,237,516	+				+0.4
1,237,516	+				+0.6
1,237,516	+				-1.1
1,237,516	+				+1.1
1,237,516	+				-2.2
1,237,516	+				-1.2
1,237,517	-				-0.9
1,237,517	-				+0.3
1,237,517	-				+2.2
1,237,517	-				-0.4
1,237,517	-				-0.0
1,237,517	-				+1.2
1,237,517	-				+1.0
1,237,517	-				+0.1
1,237,517	-				-0.8
1,237,517	-				+0.6
1,237,517	-				-0.2
1,237,590	+				-1.7
1,237,591	-				+0.2
1,237,591	-				+0.1
1,237,628	+				-0.5
1,237,687	+				+1.0
1,237,747	-				-0.0
1,237,747	-				-1.2
1,237,754	+				-0.6
1,237,754	+				+0.2
1,237,803	+				+0.5
1,237,803	+				+0.3
1,237,804	-				+0.8
1,237,804	-				+0.8
1,237,804	-				+0.1
1,237,804	-				+1.1
1,237,841	-		DZA65_RS06000	0.17	+0.8
1,237,841	-		DZA65_RS06000	0.17	+0.3
1,237,905	+		DZA65_RS06000	0.37	+0.1
1,237,905	+		DZA65_RS06000	0.37	+0.1
1,237,905	+		DZA65_RS06000	0.37	-0.1
1,237,905	+		DZA65_RS06000	0.37	+0.3
1,237,905	+		DZA65_RS06000	0.37	+0.3
1,237,905	+		DZA65_RS06000	0.37	-0.9
1,237,906	-		DZA65_RS06000	0.38	+1.6
1,237,906	-		DZA65_RS06000	0.38	-0.4
1,237,908	+		DZA65_RS06000	0.38	-1.3
1,237,908	+		DZA65_RS06000	0.38	+0.1
1,237,908	+		DZA65_RS06000	0.38	+0.1
1,237,908	+		DZA65_RS06000	0.38	-1.4
1,237,908	+		DZA65_RS06000	0.38	-0.9
1,237,909	-		DZA65_RS06000	0.39	-2.5
1,237,909	-		DZA65_RS06000	0.39	-3.2
1,238,017	+		DZA65_RS06000	0.73	-2.2
1,238,017	+		DZA65_RS06000	0.73	-0.6
1,238,017	+		DZA65_RS06000	0.73	-1.2
1,238,017	+		DZA65_RS06000	0.73	-0.2
1,238,017	+		DZA65_RS06000	0.73	-1.5
1,238,017	+		DZA65_RS06000	0.73	-1.0
1,238,018	-		DZA65_RS06000	0.73	-1.1
1,238,018	-		DZA65_RS06000	0.73	-0.6
1,238,018	-		DZA65_RS06000	0.73	+0.1
1,238,021	+		DZA65_RS06000	0.74	-0.2
1,238,021	+		DZA65_RS06000	0.74	-1.1
1,238,021	+		DZA65_RS06000	0.74	+0.1
1,238,021	+		DZA65_RS06000	0.74	-2.9
1,238,021	+		DZA65_RS06000	0.74	+0.6
1,238,021	+		DZA65_RS06000	0.74	-0.5
1,238,021	+		DZA65_RS06000	0.74	-0.9
1,238,021	+		DZA65_RS06000	0.74	+0.1
1,238,022	-		DZA65_RS06000	0.75	-0.5
1,238,022	-		DZA65_RS06000	0.75	-0.4
1,238,022	-		DZA65_RS06000	0.75	+1.3
1,238,022	-		DZA65_RS06000	0.75	-0.2
1,238,022	-		DZA65_RS06000	0.75	+1.4
1,238,022	-		DZA65_RS06000	0.75	-0.2
1,238,022	-		DZA65_RS06000	0.75	-0.7
1,238,022	-		DZA65_RS06000	0.75	-3.4
1,238,023	+		DZA65_RS06000	0.75	-0.8
1,238,024	-		DZA65_RS06000	0.75	-0.7
1,238,024	-		DZA65_RS06000	0.75	-0.0
1,238,261	+				+0.5
1,238,261	+				+1.6
1,238,262	-				-0.5
1,238,273	+				+0.2
1,238,275	+				+0.2
1,238,275	+				-1.7
1,238,302	+				-0.4
1,238,303	-				-2.5
1,238,303	-				+1.0
1,238,321	+				+0.2
1,238,321	+				+0.9
1,238,321	+				+0.6
1,238,321	+				+0.1
1,238,321	+				-0.4
1,238,321	+				-0.9
1,238,321	+				-0.2
1,238,321	+				-2.1
1,238,322	-				+0.3
1,238,322	-				+0.1
1,238,322	-				-2.7
1,238,324	-				-1.4
1,238,324	-				-0.4
1,238,445	-				-1.9
1,238,445	-				+2.5
1,238,724	+		DZA65_RS06005	0.21	-1.3
1,238,724	+		DZA65_RS06005	0.21	+0.6
1,238,724	+		DZA65_RS06005	0.21	-1.2
1,238,724	+		DZA65_RS06005	0.21	+1.4
1,238,724	+		DZA65_RS06005	0.21	+0.6
1,238,724	+		DZA65_RS06005	0.21	-1.1
1,238,724	+		DZA65_RS06005	0.21	+0.2
1,238,725	-		DZA65_RS06005	0.21	-1.4
1,238,725	-		DZA65_RS06005	0.21	-1.7
1,238,725	-		DZA65_RS06005	0.21	-1.2
1,238,725	-		DZA65_RS06005	0.21	-1.6
1,238,759	+		DZA65_RS06005	0.24	+1.1
1,238,759	+		DZA65_RS06005	0.24	+0.6
1,238,759	+		DZA65_RS06005	0.24	+0.9
1,238,760	-		DZA65_RS06005	0.24	-1.2
1,238,760	-		DZA65_RS06005	0.24	-2.9
1,238,763	+		DZA65_RS06005	0.24	+0.6
1,238,764	-		DZA65_RS06005	0.24	-0.8
1,238,764	-				-0.4
1,238,764	-		DZA65_RS06005	0.24	+0.1
1,238,885	+		DZA65_RS06005	0.33	+1.4
1,238,886	-		DZA65_RS06005	0.33	-0.1
1,239,065	+		DZA65_RS06005	0.47	-0.8
1,239,066	-		DZA65_RS06005	0.47	-0.9
1,239,066	-		DZA65_RS06005	0.47	-0.7