Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05815

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,195,874	-				+0.8
1,195,874	-				+1.9
1,195,874	-				-1.4
1,195,886	+				+0.6
1,195,901	-				-1.4
1,195,901	-				-1.1
1,195,903	+				-0.9
1,195,903	+				+2.2
1,195,903	+				-1.1
1,195,903	+				+1.1
1,195,903	+				+1.2
1,195,903	+				+0.1
1,195,903	+				+0.6
1,195,903	+				+0.6
1,195,903	+				-0.7
1,195,903	+				+0.4
1,195,904	-				-0.8
1,195,904	-				+0.8
1,195,904	-				+1.0
1,195,904	-				+0.8
1,195,904	-				-0.7
1,195,904	-				-0.4
1,195,904	-				+0.4
1,195,904	-				+1.2
1,195,904	-				-0.8
1,195,904	-				-0.8
1,195,904	-				-2.2
1,195,904	-				+0.5
1,195,904	-				-1.9
1,195,909	+				-1.4
1,195,909	+				+1.3
1,195,909	+				-0.9
1,195,910	-				+1.2
1,196,069	-				-2.0
1,196,079	+				-0.2
1,196,079	+				-1.4
1,196,092	+				+0.5
1,196,093	-				-2.4
1,196,093	-				+0.4
1,196,093	-				-1.5
1,196,093	-				+0.6
1,196,093	-				-1.2
1,196,093	-				-0.2
1,196,093	-				-0.1
1,196,149	+				-1.9
1,196,149	+				+0.2
1,196,149	+				-0.2
1,196,149	+				+0.1
1,196,150	-				+0.6
1,196,150	-				-1.9
1,196,150	-				+0.9
1,196,150	-				-0.9
1,196,150	-				-0.8
1,196,240	+		DZA65_RS05810	0.15	+1.2
1,196,273	+				+0.1
1,196,365	+		DZA65_RS05810	0.33	+1.8
1,196,366	-		DZA65_RS05810	0.33	+0.1
1,196,441	+		DZA65_RS05810	0.44	+0.4
1,196,441	+		DZA65_RS05810	0.44	+0.6
1,196,441	+		DZA65_RS05810	0.44	+0.2
1,196,441	+		DZA65_RS05810	0.44	-1.7
1,196,441	+		DZA65_RS05810	0.44	+0.9
1,196,441	+		DZA65_RS05810	0.44	-1.7
1,196,442	-		DZA65_RS05810	0.44	+0.3
1,196,442	-		DZA65_RS05810	0.44	+1.3
1,196,442	-		DZA65_RS05810	0.44	+1.9
1,196,442	-		DZA65_RS05810	0.44	-1.4
1,196,442	-		DZA65_RS05810	0.44	-0.4
1,196,442	-		DZA65_RS05810	0.44	-1.1
1,196,442	-		DZA65_RS05810	0.44	-0.3
1,196,442	-		DZA65_RS05810	0.44	+0.3
1,196,442	-		DZA65_RS05810	0.44	+0.2
1,196,442	-		DZA65_RS05810	0.44	+0.5
1,196,442	-		DZA65_RS05810	0.44	-2.5
1,196,635	+		DZA65_RS05810	0.72	+0.6
1,196,655	+		DZA65_RS05810	0.75	+1.2
1,196,655	+		DZA65_RS05810	0.75	-1.5
1,196,655	+		DZA65_RS05810	0.75	+0.0
1,196,655	+		DZA65_RS05810	0.75	+2.1
1,196,655	+		DZA65_RS05810	0.75	+0.2
1,196,655	+		DZA65_RS05810	0.75	-1.9
1,196,655	+		DZA65_RS05810	0.75	+0.6
1,196,656	-		DZA65_RS05810	0.75	-0.1
1,196,656	-		DZA65_RS05810	0.75	+0.1
1,196,656	-		DZA65_RS05810	0.75	+0.6
1,196,656	-		DZA65_RS05810	0.75	-0.7
1,196,657	+		DZA65_RS05810	0.75	-0.6
1,196,657	+				+0.6
1,196,657	+		DZA65_RS05810	0.75	-0.8
1,196,657	+		DZA65_RS05810	0.75	-2.7
1,196,657	+		DZA65_RS05810	0.75	-1.4
1,196,657	+		DZA65_RS05810	0.75	-0.1
1,196,657	+		DZA65_RS05810	0.75	+0.2
1,196,657	+		DZA65_RS05810	0.75	+0.3
1,196,657	+		DZA65_RS05810	0.75	-1.4
1,196,657	+		DZA65_RS05810	0.75	-1.1
1,196,657	+		DZA65_RS05810	0.75	-1.1
1,196,657	+		DZA65_RS05810	0.75	-1.9
1,196,657	+		DZA65_RS05810	0.75	+0.8
1,196,657	+		DZA65_RS05810	0.75	+0.1
1,196,657	+		DZA65_RS05810	0.75	+0.3
1,196,657	+		DZA65_RS05810	0.75	+0.1
1,196,657	+		DZA65_RS05810	0.75	-2.2
1,196,658	-		DZA65_RS05810	0.75	-0.1
1,196,658	-		DZA65_RS05810	0.75	-1.9
1,196,658	-		DZA65_RS05810	0.75	+1.0
1,196,658	-		DZA65_RS05810	0.75	-1.1
1,196,658	-		DZA65_RS05810	0.75	-0.9
1,196,658	-		DZA65_RS05810	0.75	-0.9
1,196,658	-		DZA65_RS05810	0.75	-0.9
1,196,658	-		DZA65_RS05810	0.75	+0.8
1,196,658	-		DZA65_RS05810	0.75	-1.5
1,196,658	-				+0.6
1,196,658	-		DZA65_RS05810	0.75	+0.1
1,196,658	-		DZA65_RS05810	0.75	-0.1
1,196,658	-		DZA65_RS05810	0.75	+0.4
1,196,658	-		DZA65_RS05810	0.75	-0.4
1,196,658	-		DZA65_RS05810	0.75	+0.6
1,196,659	+		DZA65_RS05810	0.76	+1.5
1,196,659	+		DZA65_RS05810	0.76	+0.4
1,196,659	+				+0.6
1,196,659	+		DZA65_RS05810	0.76	+1.2
1,196,659	+		DZA65_RS05810	0.76	+0.1
1,196,659	+		DZA65_RS05810	0.76	-0.7
1,196,659	+		DZA65_RS05810	0.76	+0.2
1,196,660	-		DZA65_RS05810	0.76	-1.4
1,196,660	-		DZA65_RS05810	0.76	-0.9
1,196,660	-		DZA65_RS05810	0.76	-0.9
1,196,660	-		DZA65_RS05810	0.76	+1.8
1,196,660	-		DZA65_RS05810	0.76	+0.9
1,196,660	-		DZA65_RS05810	0.76	+0.0
1,196,660	-		DZA65_RS05810	0.76	-0.8
1,196,660	-		DZA65_RS05810	0.76	-0.9
1,196,660	-		DZA65_RS05810	0.76	-0.6
1,196,660	-		DZA65_RS05810	0.76	-0.6
1,196,660	-		DZA65_RS05810	0.76	+1.6
1,196,660	-		DZA65_RS05810	0.76	+0.2
1,196,660	-		DZA65_RS05810	0.76	-1.4
1,196,685	+		DZA65_RS05810	0.79	+0.9
1,196,685	+		DZA65_RS05810	0.79	-1.9
1,196,685	+		DZA65_RS05810	0.79	+0.3
1,196,685	+		DZA65_RS05810	0.79	+0.4
1,196,695	+		DZA65_RS05810	0.81	+1.3
1,196,696	-		DZA65_RS05810	0.81	-1.3
1,196,702	+		DZA65_RS05810	0.82	-2.1
1,196,702	+		DZA65_RS05810	0.82	+2.2
1,196,702	+		DZA65_RS05810	0.82	-1.5
1,196,702	+		DZA65_RS05810	0.82	-0.9
1,196,703	-		DZA65_RS05810	0.82	-1.4
1,196,703	-		DZA65_RS05810	0.82	-0.4
1,196,703	-		DZA65_RS05810	0.82	-0.5
1,196,703	-		DZA65_RS05810	0.82	-0.5
1,196,703	-		DZA65_RS05810	0.82	-0.4
1,196,703	-		DZA65_RS05810	0.82	-1.4
1,196,828	+				+0.5
1,196,859	+				+1.1
1,196,859	+				+0.3
1,196,859	+				-0.6
1,196,860	-				-0.9
1,196,860	-				-0.7
1,196,996	+		DZA65_RS05815	0.11	-1.1
1,196,996	+		DZA65_RS05815	0.11	+0.4
1,196,996	+		DZA65_RS05815	0.11	+0.8
1,196,996	+		DZA65_RS05815	0.11	+1.9
1,196,996	+		DZA65_RS05815	0.11	+0.2
1,196,996	+		DZA65_RS05815	0.11	+0.6
1,196,997	-		DZA65_RS05815	0.11	+0.6
1,196,997	-		DZA65_RS05815	0.11	-0.2
1,196,997	-		DZA65_RS05815	0.11	-0.7
1,196,997	-		DZA65_RS05815	0.11	-1.4
1,197,018	-		DZA65_RS05815	0.12	-1.4
1,197,083	+		DZA65_RS05815	0.17	-0.9
1,197,083	+		DZA65_RS05815	0.17	-0.5
1,197,084	-		DZA65_RS05815	0.17	-0.9
1,197,092	+		DZA65_RS05815	0.18	+0.6
1,197,092	+		DZA65_RS05815	0.18	+1.2
1,197,092	+		DZA65_RS05815	0.18	-1.9
1,197,092	+		DZA65_RS05815	0.18	-1.4
1,197,092	+		DZA65_RS05815	0.18	-1.2
1,197,092	+		DZA65_RS05815	0.18	-0.4
1,197,092	+		DZA65_RS05815	0.18	+0.2
1,197,093	-		DZA65_RS05815	0.18	+0.6
1,197,093	-		DZA65_RS05815	0.18	+0.6
1,197,093	-		DZA65_RS05815	0.18	-0.7
1,197,093	-		DZA65_RS05815	0.18	-2.2
1,197,093	-		DZA65_RS05815	0.18	+0.6
1,197,093	-		DZA65_RS05815	0.18	+1.2
1,197,093	-		DZA65_RS05815	0.18	-1.1
1,197,224	-		DZA65_RS05815	0.28	+2.0
1,197,247	+		DZA65_RS05815	0.30	-0.1
1,197,247	+		DZA65_RS05815	0.30	+0.2
1,197,248	-		DZA65_RS05815	0.30	+1.2
1,197,248	-		DZA65_RS05815	0.30	-1.9
1,197,248	-		DZA65_RS05815	0.30	-1.1
1,197,248	-		DZA65_RS05815	0.30	+0.3
1,197,248	-		DZA65_RS05815	0.30	+0.6
1,197,248	-		DZA65_RS05815	0.30	+1.9
1,197,280	+		DZA65_RS05815	0.32	+0.8
1,197,281	-		DZA65_RS05815	0.32	-0.6
1,197,281	-		DZA65_RS05815	0.32	-1.7
1,197,317	+		DZA65_RS05815	0.35	-0.9
1,197,317	+		DZA65_RS05815	0.35	+2.0
1,197,317	+		DZA65_RS05815	0.35	-1.1
1,197,317	+		DZA65_RS05815	0.35	+0.0
1,197,318	-		DZA65_RS05815	0.35	-1.2
1,197,318	-		DZA65_RS05815	0.35	-0.2
1,197,318	-		DZA65_RS05815	0.35	-2.7
1,197,318	-		DZA65_RS05815	0.35	-0.1
1,197,318	-		DZA65_RS05815	0.35	-2.2
1,197,527	+		DZA65_RS05815	0.51	+1.4
1,197,528	-		DZA65_RS05815	0.51	+0.6
1,197,833	+		DZA65_RS05815	0.74	-0.4
1,197,833	+		DZA65_RS05815	0.74	-1.7
1,197,833	+		DZA65_RS05815	0.74	-1.9
1,197,833	+		DZA65_RS05815	0.74	-2.5
1,197,833	+		DZA65_RS05815	0.74	-0.8
1,197,833	+		DZA65_RS05815	0.74	-0.8
1,197,833	+		DZA65_RS05815	0.74	-0.7
1,197,833	+		DZA65_RS05815	0.74	+4.1
1,197,833	+		DZA65_RS05815	0.74	-0.1
1,197,834	-		DZA65_RS05815	0.74	-0.6
1,197,834	-		DZA65_RS05815	0.74	-0.4
1,197,834	-		DZA65_RS05815	0.74	-0.6
1,197,834	-		DZA65_RS05815	0.74	+0.9
1,197,851	-		DZA65_RS05815	0.75	-1.0
1,197,851	-		DZA65_RS05815	0.75	-0.4
1,197,851	-		DZA65_RS05815	0.75	-0.9
1,197,870	+		DZA65_RS05815	0.77	+0.2
1,197,871	-		DZA65_RS05815	0.77	-1.0
1,197,871	-		DZA65_RS05815	0.77	+1.3
1,197,871	-		DZA65_RS05815	0.77	-1.9
1,197,974	+		DZA65_RS05815	0.85	+0.6
1,197,975	-		DZA65_RS05815	0.85	-2.2
1,198,221	+				+1.2
1,198,222	-				-0.2
1,198,267	+				-1.2
1,198,434	+		DZA65_RS05820	0.18	+0.1
1,198,434	+		DZA65_RS05820	0.18	-0.9
1,198,434	+		DZA65_RS05820	0.18	+2.0
1,198,434	+		DZA65_RS05820	0.18	+0.9
1,198,434	+		DZA65_RS05820	0.18	-0.6
1,198,435	-		DZA65_RS05820	0.18	-0.7
1,198,970	+		DZA65_RS05820	0.72	+0.3
1,198,970	+		DZA65_RS05820	0.72	+1.6
1,198,970	+		DZA65_RS05820	0.72	+0.6
1,198,971	-		DZA65_RS05820	0.73	-1.7
1,198,971	-		DZA65_RS05820	0.73	+0.1
1,198,971	-		DZA65_RS05820	0.73	-1.4
1,199,015	+		DZA65_RS05820	0.77	-1.4
1,199,015	+		DZA65_RS05820	0.77	+1.1
1,199,015	+		DZA65_RS05820	0.77	-0.1
1,199,016	-		DZA65_RS05820	0.77	+0.3
1,199,016	-		DZA65_RS05820	0.77	+1.2
1,199,016	-		DZA65_RS05820	0.77	+1.9
1,199,016	-		DZA65_RS05820	0.77	-0.8
1,199,016	-		DZA65_RS05820	0.77	+0.3
1,199,024	+		DZA65_RS05820	0.78	-0.9
1,199,030	+		DZA65_RS05820	0.79	-1.7
1,199,030	+		DZA65_RS05820	0.79	-0.9
1,199,030	+		DZA65_RS05820	0.79	-1.4
1,199,031	-		DZA65_RS05820	0.79	-1.8
1,199,036	+		DZA65_RS05820	0.79	+1.9
1,199,036	+		DZA65_RS05820	0.79	-0.7
1,199,036	+		DZA65_RS05820	0.79	+2.1
1,199,036	+		DZA65_RS05820	0.79	-0.9
1,199,036	+		DZA65_RS05820	0.79	-0.7
1,199,036	+		DZA65_RS05820	0.79	+0.8
1,199,036	+		DZA65_RS05820	0.79	-0.1
1,199,036	+		DZA65_RS05820	0.79	-0.4
1,199,036	+		DZA65_RS05820	0.79	-1.7
1,199,036	+		DZA65_RS05820	0.79	-1.7
1,199,037	-		DZA65_RS05820	0.79	-0.4
1,199,044	+				+0.6
1,199,045	-		DZA65_RS05820	0.80	-0.4
1,199,138	+		DZA65_RS05820	0.90	-1.9
1,199,138	+		DZA65_RS05820	0.90	+0.3
1,199,139	-				+0.6