Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05300

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,089,433	-				+1.2
1,089,512	+				-0.0
1,089,512	+				-0.9
1,089,580	+				+1.2
1,089,581	-				+0.4
1,089,596	-				+2.1
1,089,660	+				+0.1
1,089,697	-				-0.7
1,089,697	-				+0.7
1,089,772	+				-0.3
1,089,772	+				-3.0
1,089,772	+				+0.1
1,089,773	-				-0.6
1,089,773	-				+0.7
1,089,773	-				-0.1
1,089,773	-				-0.3
1,089,783	+				+0.2
1,089,783	+				-0.3
1,089,783	+				-0.2
1,089,783	+				+1.1
1,089,783	+				+0.3
1,089,783	+				-1.5
1,089,784	-				-0.3
1,089,784	-				-1.3
1,089,784	-				-1.9
1,089,784	-				+0.2
1,089,784	-				+0.1
1,089,841	+				-0.1
1,089,841	+				+0.7
1,089,841	+				-0.1
1,089,841	+				-0.0
1,089,841	+				+0.3
1,089,841	+				-0.3
1,089,841	+				-0.1
1,089,841	+				+0.7
1,089,841	+				+0.1
1,089,841	+				-0.7
1,090,333	+		DZA65_RS05295	0.89	+0.8
1,090,426	+				+0.1
1,090,500	+				-1.7
1,090,501	-				+0.3
1,090,501	-				+0.7
1,090,501	-				-0.7
1,090,505	-				+0.7
1,090,523	+				+0.3
1,090,523	+				+0.3
1,090,523	+				-0.5
1,090,524	-				-0.1
1,090,524	-				+1.2
1,090,524	-				+0.8
1,090,550	+				+0.4
1,090,550	+				-0.3
1,090,550	+				+0.4
1,090,551	-				+0.9
1,090,551	-				+0.3
1,090,551	-				+0.2
1,090,553	+				+0.7
1,090,553	+				-0.3
1,090,554	-				+0.1
1,090,600	+				-0.2
1,090,600	+				+0.7
1,090,600	+				-0.0
1,090,601	-				-0.7
1,090,707	+				-0.3
1,090,708	-		DZA65_RS05300	0.14	-1.8
1,091,135	+		DZA65_RS05300	0.33	+0.1
1,091,135	+		DZA65_RS05300	0.33	-0.0
1,091,136	-		DZA65_RS05300	0.33	+1.8
1,091,136	-		DZA65_RS05300	0.33	-0.4
1,091,136	-		DZA65_RS05300	0.33	+0.4
1,091,271	-		DZA65_RS05300	0.39	+1.2
1,091,271	-		DZA65_RS05300	0.39	-0.3
1,091,447	+		DZA65_RS05300	0.46	-0.9
1,091,448	-		DZA65_RS05300	0.47	-0.3
1,091,448	-		DZA65_RS05300	0.47	+0.1
1,091,615	+		DZA65_RS05300	0.54	+0.5
1,091,615	+		DZA65_RS05300	0.54	+0.4
1,091,615	+		DZA65_RS05300	0.54	+0.2
1,091,615	+		DZA65_RS05300	0.54	-0.3
1,091,616	-		DZA65_RS05300	0.54	-0.8
1,091,755	+		DZA65_RS05300	0.60	-0.6
1,091,755	+		DZA65_RS05300	0.60	-0.6
1,091,755	+		DZA65_RS05300	0.60	-0.6
1,091,755	+		DZA65_RS05300	0.60	-1.9
1,091,756	-		DZA65_RS05300	0.60	+0.7
1,091,756	-		DZA65_RS05300	0.60	-0.7
1,091,784	-		DZA65_RS05300	0.61	-0.3
1,091,784	-		DZA65_RS05300	0.61	+0.4
1,091,849	+		DZA65_RS05300	0.64	+1.1
1,091,849	+		DZA65_RS05300	0.64	+0.4
1,091,849	+		DZA65_RS05300	0.64	+1.0
1,091,849	+		DZA65_RS05300	0.64	+0.7
1,091,850	-		DZA65_RS05300	0.64	+1.1
1,091,850	-		DZA65_RS05300	0.64	-0.7
1,091,850	-		DZA65_RS05300	0.64	-1.5
1,092,067	-		DZA65_RS05300	0.74	-1.7
1,092,067	-		DZA65_RS05300	0.74	+1.5
1,092,184	+		DZA65_RS05300	0.79	+0.8
1,092,184	+		DZA65_RS05300	0.79	+0.0
1,092,184	+		DZA65_RS05300	0.79	-1.2
1,092,184	+		DZA65_RS05300	0.79	-0.3
1,092,185	-		DZA65_RS05300	0.79	-0.0
1,092,185	-		DZA65_RS05300	0.79	-1.6
1,092,276	-		DZA65_RS05300	0.83	-0.2
1,092,295	+		DZA65_RS05300	0.84	-0.1
1,092,295	+		DZA65_RS05300	0.84	-1.2
1,092,295	+		DZA65_RS05300	0.84	-0.3
1,092,295	+		DZA65_RS05300	0.84	-0.9
1,092,296	-		DZA65_RS05300	0.84	-1.7
1,092,298	+		DZA65_RS05300	0.84	+2.7
1,092,298	+		DZA65_RS05300	0.84	-1.2
1,092,299	-		DZA65_RS05300	0.84	+0.2
1,092,299	-		DZA65_RS05300	0.84	+0.2
1,092,299	-		DZA65_RS05300	0.84	-2.3
1,092,318	+		DZA65_RS05300	0.85	+1.5
1,092,319	-		DZA65_RS05300	0.85	-2.5
1,092,320	+		DZA65_RS05300	0.85	-2.3
1,092,320	+		DZA65_RS05300	0.85	+0.8
1,092,320	+		DZA65_RS05300	0.85	+0.7
1,092,320	+		DZA65_RS05300	0.85	+0.4
1,092,320	+		DZA65_RS05300	0.85	+0.1
1,092,320	+		DZA65_RS05300	0.85	-0.5
1,092,321	-		DZA65_RS05300	0.85	+0.5
1,092,321	-		DZA65_RS05300	0.85	+0.0
1,092,321	-		DZA65_RS05300	0.85	-1.7
1,092,321	-		DZA65_RS05300	0.85	-1.3
1,092,321	-		DZA65_RS05300	0.85	-0.9
1,092,363	+		DZA65_RS05300	0.87	-0.9
1,092,363	+		DZA65_RS05300	0.87	+0.0
1,092,363	+		DZA65_RS05300	0.87	+0.0
1,092,363	+		DZA65_RS05300	0.87	+0.2
1,092,363	+		DZA65_RS05300	0.87	-1.2
1,092,363	+		DZA65_RS05300	0.87	+0.8
1,092,363	+		DZA65_RS05300	0.87	+0.2
1,092,363	+		DZA65_RS05300	0.87	+0.1
1,092,364	-		DZA65_RS05300	0.87	+1.5
1,092,364	-		DZA65_RS05300	0.87	+0.3
1,092,364	-		DZA65_RS05300	0.87	+1.4
1,092,364	-		DZA65_RS05300	0.87	+0.7
1,092,364	-		DZA65_RS05300	0.87	-0.7
1,092,367	+		DZA65_RS05300	0.87	-0.8
1,092,367	+		DZA65_RS05300	0.87	-0.1
1,092,367	+		DZA65_RS05300	0.87	+1.7
1,092,367	+		DZA65_RS05300	0.87	+0.8
1,092,367	+		DZA65_RS05300	0.87	-2.2
1,092,368	-		DZA65_RS05300	0.87	-0.6
1,092,368	-		DZA65_RS05300	0.87	+0.7
1,092,368	-		DZA65_RS05300	0.87	-0.2
1,092,383	+		DZA65_RS05300	0.88	-2.3
1,092,383	+		DZA65_RS05300	0.88	+1.3
1,092,384	-		DZA65_RS05300	0.88	-0.6
1,092,503	+				+1.0
1,092,503	+				+1.5
1,092,503	+				-2.4
1,092,503	+				-0.3
1,092,696	+				-1.5
1,092,696	+				+0.2
1,092,696	+				-2.2
1,092,696	+				+0.7
1,092,707	+				+0.8
1,092,738	+				+1.1
1,092,743	+				+0.6
1,092,743	+				+1.1
1,092,743	+				+0.5
1,092,743	+				+0.7
1,092,743	+				+0.8
1,092,743	+				-1.2
1,092,796	+				+0.3
1,092,800	+				+0.7