Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04925

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,019,598	+		DZA65_RS04915	0.62	-0.3
1,019,599	-		DZA65_RS04915	0.62	+0.5
1,019,610	+		DZA65_RS04915	0.63	-0.9
1,019,611	-		DZA65_RS04915	0.63	-0.7
1,019,635	+		DZA65_RS04915	0.65	-0.1
1,019,635	+		DZA65_RS04915	0.65	-1.3
1,019,635	+		DZA65_RS04915	0.65	+1.5
1,019,636	-		DZA65_RS04915	0.65	+0.7
1,019,636	-		DZA65_RS04915	0.65	-1.3
1,019,655	+		DZA65_RS04915	0.66	-1.3
1,019,656	-		DZA65_RS04915	0.66	+1.1
1,019,827	-		DZA65_RS04915	0.80	+0.6
1,019,827	-		DZA65_RS04915	0.80	-0.3
1,019,827	-		DZA65_RS04915	0.80	+1.6
1,019,908	-		DZA65_RS04915	0.86	-2.3
1,019,908	-		DZA65_RS04915	0.86	+0.8
1,020,015	+				-0.2
1,020,015	+				+0.9
1,020,015	+				-0.3
1,020,016	-				-2.1
1,020,048	+				+0.7
1,020,048	+				+0.2
1,020,048	+				+0.2
1,020,052	+				-1.9
1,020,053	-				-0.2
1,020,073	+				-0.1
1,020,073	+				-0.5
1,020,074	-				-1.0
1,020,074	-				+0.1
1,020,074	-				+0.4
1,020,074	-				-0.6
1,020,138	+		DZA65_RS04920	0.13	-0.9
1,020,138	+		DZA65_RS04920	0.13	-0.3
1,020,138	+		DZA65_RS04920	0.13	-1.2
1,020,139	-		DZA65_RS04920	0.13	-0.1
1,020,139	-		DZA65_RS04920	0.13	-0.5
1,020,139	-		DZA65_RS04920	0.13	-0.3
1,020,152	-		DZA65_RS04920	0.16	+0.2
1,020,152	-		DZA65_RS04920	0.16	+0.3
1,020,208	+		DZA65_RS04920	0.27	+0.1
1,020,208	+		DZA65_RS04920	0.27	-1.3
1,020,208	+		DZA65_RS04920	0.27	-1.1
1,020,208	+		DZA65_RS04920	0.27	+0.7
1,020,208	+		DZA65_RS04920	0.27	+1.1
1,020,208	+		DZA65_RS04920	0.27	+0.6
1,020,208	+				-1.9
1,020,209	-		DZA65_RS04920	0.27	-0.3
1,020,209	-		DZA65_RS04920	0.27	-1.1
1,020,209	-		DZA65_RS04920	0.27	-0.7
1,020,209	-		DZA65_RS04920	0.27	-1.5
1,020,209	-		DZA65_RS04920	0.27	-0.6
1,020,209	-		DZA65_RS04920	0.27	-1.6
1,020,400	-		DZA65_RS04920	0.65	+0.0
1,020,417	-		DZA65_RS04920	0.68	+1.9
1,020,436	-		DZA65_RS04920	0.72	+0.3
1,020,579	+				-0.4
1,020,579	+				+2.3
1,020,604	+				+1.6
1,020,604	+				-0.3
1,020,604	+				-1.1
1,020,604	+				-0.1
1,020,604	+				-0.5
1,020,604	+				-0.3
1,020,605	-				-0.1
1,020,605	-				-0.1
1,020,608	+				-1.3
1,020,609	-				-0.8
1,020,609	-				+1.3
1,020,698	+				+0.2
1,020,698	+				+0.2
1,020,698	+				+2.5
1,020,698	+				+2.3
1,020,698	+				-0.7
1,020,698	+				+1.2
1,020,698	+				-0.5
1,020,698	+				+0.3
1,020,698	+				-0.9
1,020,698	+				+0.5
1,020,699	-				+0.9
1,020,699	-				-1.4
1,020,699	-				-0.9
1,020,699	-				-1.8
1,020,699	-				-0.6
1,020,699	-				-1.6
1,020,699	-				-0.1
1,020,699	-				+0.3
1,020,699	-				-0.9
1,020,699	-				+0.5
1,020,700	+				-0.7
1,020,700	+				-1.5
1,020,700	+				-1.5
1,020,700	+				-0.2
1,020,700	+				+0.1
1,020,700	+				-1.3
1,020,700	+				-1.3
1,020,700	+				+0.7
1,020,701	-				-1.8
1,020,701	-				-1.8
1,020,701	-				+0.1
1,020,725	+				-0.1
1,020,726	-				-0.5
1,020,726	-				-0.6
1,020,787	+		DZA65_RS04925	0.13	+0.9
1,020,787	+		DZA65_RS04925	0.13	+2.0
1,020,788	-		DZA65_RS04925	0.13	-1.0
1,020,797	+		DZA65_RS04925	0.14	-0.2
1,020,855	+		DZA65_RS04925	0.17	+0.6
1,020,855	+		DZA65_RS04925	0.17	-1.3
1,020,855	+		DZA65_RS04925	0.17	+0.4
1,020,856	-		DZA65_RS04925	0.17	-1.2
1,020,856	-		DZA65_RS04925	0.17	-0.4
1,020,856	-		DZA65_RS04925	0.17	-0.1
1,020,856	-		DZA65_RS04925	0.17	-0.0
1,020,856	-		DZA65_RS04925	0.17	+0.4
1,020,899	+		DZA65_RS04925	0.20	+1.5
1,020,899	+				+2.3
1,020,957	+		DZA65_RS04925	0.24	+2.0
1,020,957	+		DZA65_RS04925	0.24	-1.8
1,020,957	+		DZA65_RS04925	0.24	+1.1
1,020,957	+		DZA65_RS04925	0.24	+0.4
1,020,957	+		DZA65_RS04925	0.24	+0.0
1,020,957	+		DZA65_RS04925	0.24	-1.9
1,020,957	+		DZA65_RS04925	0.24	-0.3
1,020,957	+		DZA65_RS04925	0.24	-0.7
1,020,958	-		DZA65_RS04925	0.24	+0.1
1,020,958	-		DZA65_RS04925	0.24	+0.3
1,020,958	-		DZA65_RS04925	0.24	-0.0
1,020,958	-		DZA65_RS04925	0.24	+0.7
1,020,958	-		DZA65_RS04925	0.24	-1.3
1,021,011	+		DZA65_RS04925	0.27	-1.0
1,021,011	+		DZA65_RS04925	0.27	+0.9
1,021,011	+		DZA65_RS04925	0.27	+1.3
1,021,011	+		DZA65_RS04925	0.27	-0.2
1,021,011	+		DZA65_RS04925	0.27	+0.9
1,021,011	+		DZA65_RS04925	0.27	+0.8
1,021,011	+		DZA65_RS04925	0.27	-0.6
1,021,011	+		DZA65_RS04925	0.27	+0.1
1,021,012	-		DZA65_RS04925	0.27	+0.7
1,021,012	-		DZA65_RS04925	0.27	-0.4
1,021,012	-		DZA65_RS04925	0.27	-0.0
1,021,012	-		DZA65_RS04925	0.27	-0.0
1,021,012	-		DZA65_RS04925	0.27	+3.3
1,021,012	-		DZA65_RS04925	0.27	+1.3
1,021,012	-		DZA65_RS04925	0.27	+3.0
1,021,012	-		DZA65_RS04925	0.27	+1.3
1,021,060	+		DZA65_RS04925	0.31	-0.3
1,021,060	+		DZA65_RS04925	0.31	-1.6
1,021,061	-		DZA65_RS04925	0.31	-1.3
1,021,061	-		DZA65_RS04925	0.31	+1.9
1,021,061	-		DZA65_RS04925	0.31	-2.5
1,021,073	+		DZA65_RS04925	0.31	-1.0
1,021,074	-		DZA65_RS04925	0.31	+0.3
1,021,119	+		DZA65_RS04925	0.34	+0.3
1,021,120	-		DZA65_RS04925	0.34	-0.5
1,021,128	-		DZA65_RS04925	0.35	-1.2
1,021,128	-		DZA65_RS04925	0.35	-0.2
1,021,128	-		DZA65_RS04925	0.35	+0.4
1,021,149	+		DZA65_RS04925	0.36	-0.1
1,021,149	+		DZA65_RS04925	0.36	+0.1
1,021,149	+		DZA65_RS04925	0.36	-1.3
1,021,149	+		DZA65_RS04925	0.36	-0.4
1,021,149	+		DZA65_RS04925	0.36	-0.8
1,021,149	+		DZA65_RS04925	0.36	-0.6
1,021,149	+		DZA65_RS04925	0.36	+0.4
1,021,149	+		DZA65_RS04925	0.36	+0.6
1,021,149	+		DZA65_RS04925	0.36	-2.0
1,021,149	+		DZA65_RS04925	0.36	+1.5
1,021,149	+		DZA65_RS04925	0.36	-1.3
1,021,150	-				+0.7
1,021,150	-		DZA65_RS04925	0.36	+0.1
1,021,150	-		DZA65_RS04925	0.36	-1.4
1,021,150	-		DZA65_RS04925	0.36	-0.1
1,021,150	-		DZA65_RS04925	0.36	-0.5
1,021,150	-		DZA65_RS04925	0.36	-0.2
1,021,150	-		DZA65_RS04925	0.36	-0.4
1,021,150	-		DZA65_RS04925	0.36	-1.9
1,021,150	-		DZA65_RS04925	0.36	-0.6
1,021,150	-		DZA65_RS04925	0.36	-1.6
1,021,156	+		DZA65_RS04925	0.37	-1.2
1,021,156	+		DZA65_RS04925	0.37	+1.4
1,021,157	-		DZA65_RS04925	0.37	-2.3
1,021,159	+		DZA65_RS04925	0.37	-0.0
1,021,159	+		DZA65_RS04925	0.37	+0.4
1,021,159	+		DZA65_RS04925	0.37	-0.5
1,021,160	-		DZA65_RS04925	0.37	+0.5
1,021,242	+		DZA65_RS04925	0.42	-0.3
1,021,287	-		DZA65_RS04925	0.45	+2.0
1,021,299	-		DZA65_RS04925	0.46	-1.3
1,021,344	+		DZA65_RS04925	0.49	-2.6
1,021,345	-		DZA65_RS04925	0.49	-2.6
1,021,377	+		DZA65_RS04925	0.51	-0.3
1,021,378	-		DZA65_RS04925	0.51	+1.7
1,021,378	-		DZA65_RS04925	0.51	-0.9
1,021,394	+		DZA65_RS04925	0.52	-0.2
1,021,394	+		DZA65_RS04925	0.52	-1.0
1,021,394	+		DZA65_RS04925	0.52	-0.5
1,021,395	-		DZA65_RS04925	0.52	+0.4
1,021,395	-		DZA65_RS04925	0.52	-1.0
1,021,395	-		DZA65_RS04925	0.52	-3.2
1,021,510	+		DZA65_RS04925	0.59	-1.3
1,021,511	-		DZA65_RS04925	0.59	+0.7
1,021,511	-		DZA65_RS04925	0.59	-1.1
1,021,511	-		DZA65_RS04925	0.59	-1.1
1,021,550	+		DZA65_RS04925	0.62	-0.2
1,021,551	-		DZA65_RS04925	0.62	+0.2
1,021,551	-		DZA65_RS04925	0.62	+1.4
1,021,554	+		DZA65_RS04925	0.62	-1.3
1,021,554	+		DZA65_RS04925	0.62	+0.4
1,021,554	+		DZA65_RS04925	0.62	+0.7
1,021,554	+		DZA65_RS04925	0.62	-0.7
1,021,554	+		DZA65_RS04925	0.62	-0.3
1,021,554	+		DZA65_RS04925	0.62	-0.9
1,021,554	+		DZA65_RS04925	0.62	-0.3
1,021,554	+		DZA65_RS04925	0.62	+0.3
1,021,554	+		DZA65_RS04925	0.62	+0.4
1,021,554	+		DZA65_RS04925	0.62	-1.9
1,021,555	-		DZA65_RS04925	0.62	+0.4
1,021,555	-		DZA65_RS04925	0.62	-1.3
1,021,555	-		DZA65_RS04925	0.62	-1.9
1,021,555	-		DZA65_RS04925	0.62	-0.6
1,021,555	-		DZA65_RS04925	0.62	-0.9
1,021,555	-		DZA65_RS04925	0.62	-0.0
1,021,598	+		DZA65_RS04925	0.65	-0.3
1,021,598	+		DZA65_RS04925	0.65	+0.3
1,021,599	-		DZA65_RS04925	0.65	-2.1
1,021,599	-		DZA65_RS04925	0.65	-0.9
1,021,599	-		DZA65_RS04925	0.65	-0.1
1,021,599	-		DZA65_RS04925	0.65	-1.3
1,021,599	-		DZA65_RS04925	0.65	-0.2
1,021,688	+		DZA65_RS04925	0.71	-0.0
1,021,688	+		DZA65_RS04925	0.71	-0.2
1,021,689	-		DZA65_RS04925	0.71	+0.0
1,021,689	-		DZA65_RS04925	0.71	-1.8
1,021,793	+		DZA65_RS04925	0.78	+0.1
1,021,794	-		DZA65_RS04925	0.78	-1.5
1,021,794	-		DZA65_RS04925	0.78	-1.1
1,021,806	-		DZA65_RS04925	0.78	+1.5
1,021,806	-		DZA65_RS04925	0.78	-0.6
1,021,806	-		DZA65_RS04925	0.78	+0.4
1,021,811	+		DZA65_RS04925	0.79	-0.8
1,021,811	+		DZA65_RS04925	0.79	-0.2
1,021,811	+		DZA65_RS04925	0.79	-0.5
1,021,811	+		DZA65_RS04925	0.79	+1.3
1,021,812	-		DZA65_RS04925	0.79	-1.5
1,021,812	-		DZA65_RS04925	0.79	-0.7
1,021,904	-		DZA65_RS04925	0.85	-0.9
1,021,952	+		DZA65_RS04925	0.88	-0.9
1,021,953	-		DZA65_RS04925	0.88	+0.2
1,021,953	-		DZA65_RS04925	0.88	-1.3
1,021,976	+		DZA65_RS04925	0.89	-0.5
1,021,985	-		DZA65_RS04925	0.90	+1.3
1,022,188	+				-0.7
1,022,189	-				-0.3
1,022,191	+				+0.1
1,022,192	-				-0.3
1,022,192	-				+1.0
1,022,192	-				-0.6
1,022,212	-				-1.8
1,022,338	+		DZA65_RS04930	0.16	-0.1
1,022,338	+		DZA65_RS04930	0.16	-2.1
1,022,338	+		DZA65_RS04930	0.16	-0.2
1,022,338	+		DZA65_RS04930	0.16	+0.8
1,022,338	+		DZA65_RS04930	0.16	-1.3
1,022,338	+		DZA65_RS04930	0.16	+0.1
1,022,338	+		DZA65_RS04930	0.16	+2.5
1,022,338	+		DZA65_RS04930	0.16	-1.0
1,022,338	+		DZA65_RS04930	0.16	+0.7
1,022,339	-		DZA65_RS04930	0.16	+0.4
1,022,339	-		DZA65_RS04930	0.16	+1.2
1,022,339	-		DZA65_RS04930	0.16	+0.0
1,022,339	-		DZA65_RS04930	0.16	-0.9
1,022,339	-		DZA65_RS04930	0.16	-0.8
1,022,339	-		DZA65_RS04930	0.16	+0.1
1,022,339	-		DZA65_RS04930	0.16	+0.7
1,022,339	-		DZA65_RS04930	0.16	+0.5
1,022,339	-		DZA65_RS04930	0.16	+0.7
1,022,340	+		DZA65_RS04930	0.16	-0.0
1,022,340	+		DZA65_RS04930	0.16	-1.1
1,022,340	+		DZA65_RS04930	0.16	-0.6
1,022,340	+		DZA65_RS04930	0.16	+2.3
1,022,340	+		DZA65_RS04930	0.16	+1.7
1,022,341	-		DZA65_RS04930	0.16	-0.3
1,022,341	-		DZA65_RS04930	0.16	-0.3
1,022,341	-		DZA65_RS04930	0.16	+0.8
1,022,341	-		DZA65_RS04930	0.16	-1.3
1,022,341	-		DZA65_RS04930	0.16	+1.4
1,022,341	-		DZA65_RS04930	0.16	-1.6
1,022,341	-		DZA65_RS04930	0.16	-2.5
1,022,417	+		DZA65_RS04930	0.23	-1.3
1,022,555	-		DZA65_RS04930	0.36	-0.5
1,022,571	-		DZA65_RS04930	0.38	-1.2
1,022,598	+		DZA65_RS04930	0.40	-0.6
1,022,599	-		DZA65_RS04930	0.40	-1.8
1,022,599	-		DZA65_RS04930	0.40	-2.6
1,022,599	-		DZA65_RS04930	0.40	+0.7
1,022,602	-		DZA65_RS04930	0.41	+0.7
1,022,628	+		DZA65_RS04930	0.43	+2.4
1,022,628	+		DZA65_RS04930	0.43	-1.6
1,022,629	-		DZA65_RS04930	0.43	+0.5
1,022,712	-		DZA65_RS04930	0.51	+0.7
1,022,786	+		DZA65_RS04930	0.58	+0.3
1,022,786	+		DZA65_RS04930	0.58	+0.7
1,022,786	+		DZA65_RS04930	0.58	-0.1
1,022,787	-		DZA65_RS04930	0.58	+0.5
1,022,797	+		DZA65_RS04930	0.59	-0.9
1,022,797	+		DZA65_RS04930	0.59	+1.8
1,022,797	+		DZA65_RS04930	0.59	+2.1
1,022,797	+		DZA65_RS04930	0.59	-1.1
1,022,797	+		DZA65_RS04930	0.59	-0.1
1,022,798	-		DZA65_RS04930	0.59	-0.5
1,022,798	-		DZA65_RS04930	0.59	-1.0
1,022,818	+		DZA65_RS04930	0.61	+0.3
1,022,818	+				-0.3
1,022,819	-		DZA65_RS04930	0.61	+0.7
1,022,868	-		DZA65_RS04930	0.65	-0.6
1,023,037	+		DZA65_RS04930	0.81	+0.4
1,023,037	+				+1.7
1,023,037	+		DZA65_RS04930	0.81	+2.4
1,023,038	-		DZA65_RS04930	0.81	+0.5
1,023,038	-		DZA65_RS04930	0.81	+0.2
1,023,038	-		DZA65_RS04930	0.81	-2.3
1,023,038	-		DZA65_RS04930	0.81	-0.1
1,023,038	-		DZA65_RS04930	0.81	-1.0
1,023,038	-		DZA65_RS04930	0.81	+1.4
1,023,078	+		DZA65_RS04930	0.85	+2.3
1,023,088	+		DZA65_RS04930	0.86	-0.2
1,023,088	+		DZA65_RS04930	0.86	+0.4
1,023,088	+		DZA65_RS04930	0.86	-0.7
1,023,088	+		DZA65_RS04930	0.86	-0.6
1,023,088	+		DZA65_RS04930	0.86	+2.3
1,023,088	+		DZA65_RS04930	0.86	+0.1
1,023,088	+		DZA65_RS04930	0.86	+0.1
1,023,089	-		DZA65_RS04930	0.86	-1.7
1,023,089	-		DZA65_RS04930	0.86	+0.9
1,023,089	-		DZA65_RS04930	0.86	-1.4
1,023,089	-		DZA65_RS04930	0.86	-0.9
1,023,089	-		DZA65_RS04930	0.86	-1.3
1,023,089	-		DZA65_RS04930	0.86	-0.4
1,023,089	-		DZA65_RS04930	0.86	-0.3
1,023,089	-		DZA65_RS04930	0.86	-0.6
1,023,089	-		DZA65_RS04930	0.86	-1.3