Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04585 and DZA65_RS04590 are separated by 130 nucleotides DZA65_RS04590 and DZA65_RS04595 overlap by 1 nucleotides
DZA65_RS04585: DZA65_RS04585 - HAMP domain-containing protein, at 957,606 to 958,775
_RS04585
DZA65_RS04590: DZA65_RS04590 - efflux RND transporter periplasmic adaptor subunit, at 958,906 to 960,048
_RS04590
DZA65_RS04595: DZA65_RS04595 - efflux RND transporter permease subunit, at 960,048 to 963,113
_RS04595
Position (kb) 958
959
960
961 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 958.319 kb on + strand, within DZA65_RS04585 at 958.397 kb on + strand, within DZA65_RS04585 at 958.397 kb on + strand, within DZA65_RS04585 at 958.397 kb on + strand, within DZA65_RS04585 at 958.398 kb on - strand, within DZA65_RS04585 at 958.398 kb on - strand, within DZA65_RS04585 at 958.398 kb on - strand, within DZA65_RS04585 at 958.429 kb on - strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.570 kb on - strand, within DZA65_RS04585 at 958.752 kb on - strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.874 kb on - strand at 958.874 kb on - strand at 958.891 kb on - strand at 958.914 kb on + strand at 958.914 kb on + strand at 958.914 kb on + strand at 958.915 kb on - strand at 958.915 kb on - strand at 958.946 kb on + strand at 958.946 kb on + strand at 958.947 kb on - strand at 958.947 kb on - strand at 958.947 kb on - strand at 958.947 kb on - strand at 958.947 kb on - strand at 959.332 kb on - strand, within DZA65_RS04590 at 959.365 kb on - strand, within DZA65_RS04590 at 959.470 kb on + strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.642 kb on + strand, within DZA65_RS04590 at 959.790 kb on - strand, within DZA65_RS04590 at 959.932 kb on + strand, within DZA65_RS04590 at 959.932 kb on + strand, within DZA65_RS04590 at 959.933 kb on - strand, within DZA65_RS04590 at 959.933 kb on - strand, within DZA65_RS04590 at 960.027 kb on + strand at 960.046 kb on + strand at 960.046 kb on + strand at 960.046 kb on + strand at 960.046 kb on + strand at 960.046 kb on + strand at 960.047 kb on - strand at 960.047 kb on - strand at 960.047 kb on - strand at 960.156 kb on + strand at 960.157 kb on - strand at 960.191 kb on + strand at 960.192 kb on - strand at 960.192 kb on - strand at 960.192 kb on - strand at 960.192 kb on - strand at 960.192 kb on - strand at 960.197 kb on + strand at 960.283 kb on + strand at 960.297 kb on + strand at 960.297 kb on + strand at 960.298 kb on - strand at 960.308 kb on + strand at 960.318 kb on + strand at 960.318 kb on + strand at 960.318 kb on + strand at 960.319 kb on - strand at 960.319 kb on - strand at 960.319 kb on - strand at 960.319 kb on - strand at 960.365 kb on + strand, within DZA65_RS04595 at 960.366 kb on - strand, within DZA65_RS04595 at 960.366 kb on - strand, within DZA65_RS04595 at 960.382 kb on + strand, within DZA65_RS04595 at 960.383 kb on - strand, within DZA65_RS04595 at 960.396 kb on + strand, within DZA65_RS04595 at 960.397 kb on - strand, within DZA65_RS04595 at 960.422 kb on + strand, within DZA65_RS04595 at 960.422 kb on + strand, within DZA65_RS04595 at 960.422 kb on + strand, within DZA65_RS04595 at 960.482 kb on + strand, within DZA65_RS04595 at 960.483 kb on - strand, within DZA65_RS04595 at 960.483 kb on - strand, within DZA65_RS04595 at 960.498 kb on + strand, within DZA65_RS04595 at 960.519 kb on + strand, within DZA65_RS04595 at 960.695 kb on - strand, within DZA65_RS04595 at 960.855 kb on + strand, within DZA65_RS04595
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 958,319 + DZA65_RS04585 0.61 -0.3 958,397 + DZA65_RS04585 0.68 +0.7 958,397 + DZA65_RS04585 0.68 +1.3 958,397 + DZA65_RS04585 0.68 -0.8 958,398 - DZA65_RS04585 0.68 +0.3 958,398 - DZA65_RS04585 0.68 +0.8 958,398 - DZA65_RS04585 0.68 -2.0 958,429 - DZA65_RS04585 0.70 -0.3 958,520 + DZA65_RS04585 0.78 -0.2 958,520 + DZA65_RS04585 0.78 -0.3 958,520 + DZA65_RS04585 0.78 +1.0 958,520 + DZA65_RS04585 0.78 -0.3 958,520 + DZA65_RS04585 0.78 +0.4 958,521 - DZA65_RS04585 0.78 -2.3 958,521 - DZA65_RS04585 0.78 +1.1 958,521 - DZA65_RS04585 0.78 +2.9 958,521 - DZA65_RS04585 0.78 -0.3 958,570 - DZA65_RS04585 0.82 +0.3 958,752 - +0.4 958,873 + +0.4 958,873 + +0.7 958,873 + -1.0 958,873 + -1.6 958,873 + -0.3 958,874 - -1.8 958,874 - -2.3 958,891 - -1.6 958,914 + +0.1 958,914 + +0.1 958,914 + +0.3 958,915 - -1.3 958,915 - -0.9 958,946 + -0.9 958,946 + -1.3 958,947 - +0.7 958,947 - -1.2 958,947 - -0.3 958,947 - -0.3 958,947 - +1.4 959,332 - DZA65_RS04590 0.37 -0.9 959,365 - DZA65_RS04590 0.40 -1.9 959,470 + DZA65_RS04590 0.49 -0.4 959,471 - DZA65_RS04590 0.49 -1.5 959,471 - DZA65_RS04590 0.49 -0.4 959,471 - DZA65_RS04590 0.49 +0.4 959,471 - DZA65_RS04590 0.49 +0.4 959,642 + DZA65_RS04590 0.64 -0.6 959,790 - DZA65_RS04590 0.77 +0.6 959,932 + DZA65_RS04590 0.90 -0.3 959,932 + DZA65_RS04590 0.90 -1.3 959,933 - DZA65_RS04590 0.90 +1.0 959,933 - DZA65_RS04590 0.90 -1.0 960,027 + -0.8 960,046 + -0.3 960,046 + +0.9 960,046 + +1.7 960,046 + +0.4 960,046 + +0.2 960,047 - -0.0 960,047 - +0.8 960,047 - +0.7 960,156 + -2.6 960,157 - +1.9 960,191 + -2.3 960,192 - +0.7 960,192 - -0.3 960,192 - +0.2 960,192 - +0.1 960,192 - -0.6 960,197 + +1.0 960,283 + +0.7 960,297 + -0.9 960,297 + +0.1 960,298 - -1.1 960,308 + +0.3 960,318 + -0.9 960,318 + +0.6 960,318 + +1.0 960,319 - +0.7 960,319 - -0.3 960,319 - +0.3 960,319 - +1.7 960,365 + DZA65_RS04595 0.10 +1.3 960,366 - DZA65_RS04595 0.10 -1.5 960,366 - DZA65_RS04595 0.10 -0.4 960,382 + DZA65_RS04595 0.11 +0.5 960,383 - DZA65_RS04595 0.11 -0.5 960,396 + DZA65_RS04595 0.11 -0.1 960,397 - DZA65_RS04595 0.11 -0.1 960,422 + DZA65_RS04595 0.12 +0.3 960,422 + DZA65_RS04595 0.12 +0.1 960,422 + DZA65_RS04595 0.12 -2.8 960,482 + DZA65_RS04595 0.14 -1.6 960,483 - DZA65_RS04595 0.14 -1.9 960,483 - DZA65_RS04595 0.14 +0.2 960,498 + DZA65_RS04595 0.15 -0.9 960,519 + DZA65_RS04595 0.15 -0.7 960,695 - DZA65_RS04595 0.21 +1.8 960,855 + DZA65_RS04595 0.26 -0.5
Or see this region's nucleotide sequence