Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04485 and DZA65_RS04490 overlap by 8 nucleotides DZA65_RS04490 and DZA65_RS04495 overlap by 11 nucleotides
DZA65_RS04485: DZA65_RS04485 - substrate-binding domain-containing protein, at 935,148 to 936,134
_RS04485
DZA65_RS04490: DZA65_RS04490 - ribonuclease Z, at 936,127 to 936,894
_RS04490
DZA65_RS04495: DZA65_RS04495 - ABC transporter ATP-binding protein, at 936,884 to 937,933
_RS04495
Position (kb) 936
937 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 935.149 kb on + strand at 935.150 kb on - strand at 935.171 kb on + strand at 935.171 kb on + strand at 935.172 kb on - strand at 935.172 kb on - strand at 935.464 kb on + strand, within DZA65_RS04485 at 935.574 kb on - strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.128 kb on + strand at 936.128 kb on + strand at 936.128 kb on + strand at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.329 kb on + strand, within DZA65_RS04490 at 936.431 kb on + strand, within DZA65_RS04490 at 936.432 kb on - strand, within DZA65_RS04490 at 936.461 kb on + strand, within DZA65_RS04490 at 936.461 kb on + strand at 936.462 kb on - strand, within DZA65_RS04490 at 936.462 kb on - strand, within DZA65_RS04490 at 936.462 kb on - strand, within DZA65_RS04490 at 936.552 kb on + strand, within DZA65_RS04490 at 936.552 kb on + strand, within DZA65_RS04490 at 936.723 kb on + strand, within DZA65_RS04490 at 936.723 kb on + strand, within DZA65_RS04490 at 936.723 kb on + strand, within DZA65_RS04490 at 936.724 kb on - strand, within DZA65_RS04490 at 936.724 kb on - strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.729 kb on - strand at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.860 kb on + strand at 936.860 kb on + strand at 936.860 kb on + strand at 936.860 kb on + strand at 936.861 kb on - strand at 937.074 kb on + strand, within DZA65_RS04495 at 937.108 kb on + strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.399 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.621 kb on + strand, within DZA65_RS04495 at 937.622 kb on - strand, within DZA65_RS04495 at 937.622 kb on - strand, within DZA65_RS04495 at 937.675 kb on - strand, within DZA65_RS04495 at 937.683 kb on + strand, within DZA65_RS04495 at 937.684 kb on - strand, within DZA65_RS04495 at 937.736 kb on - strand, within DZA65_RS04495 at 937.736 kb on - strand, within DZA65_RS04495
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 935,149 + +0.7 935,150 - -1.6 935,171 + -2.5 935,171 + -3.8 935,172 - +0.7 935,172 - -1.0 935,464 + DZA65_RS04485 0.32 -0.7 935,574 - DZA65_RS04485 0.43 -1.6 935,575 + DZA65_RS04485 0.43 +0.7 935,575 + DZA65_RS04485 0.43 -0.9 935,575 + DZA65_RS04485 0.43 -1.6 935,575 + DZA65_RS04485 0.43 +0.1 935,575 + DZA65_RS04485 0.43 -2.1 935,575 + DZA65_RS04485 0.43 -1.6 935,576 - DZA65_RS04485 0.43 +0.7 935,576 - DZA65_RS04485 0.43 -2.0 935,576 - DZA65_RS04485 0.43 -1.2 935,576 - DZA65_RS04485 0.43 -0.9 935,576 - DZA65_RS04485 0.43 +1.0 935,576 - DZA65_RS04485 0.43 +1.4 936,058 + +1.4 936,058 + +1.3 936,058 + +0.4 936,058 + +0.3 936,058 + -0.7 936,058 + -1.3 936,059 - +1.3 936,059 - -0.2 936,059 - -0.5 936,059 - -0.0 936,059 - -1.9 936,128 + +1.2 936,128 + +0.7 936,128 + -0.2 936,266 + DZA65_RS04490 0.18 -1.3 936,266 + DZA65_RS04490 0.18 -0.2 936,266 + DZA65_RS04490 0.18 +0.6 936,266 + DZA65_RS04490 0.18 -2.5 936,266 + DZA65_RS04490 0.18 -0.5 936,266 + DZA65_RS04490 0.18 -0.3 936,266 + DZA65_RS04490 0.18 -1.7 936,267 - DZA65_RS04490 0.18 -1.5 936,267 - DZA65_RS04490 0.18 -0.9 936,267 - DZA65_RS04490 0.18 -0.5 936,267 - DZA65_RS04490 0.18 +0.3 936,329 + DZA65_RS04490 0.26 +0.0 936,431 + DZA65_RS04490 0.40 -0.7 936,432 - DZA65_RS04490 0.40 -1.3 936,461 + DZA65_RS04490 0.43 +0.2 936,461 + -0.3 936,462 - DZA65_RS04490 0.44 -0.7 936,462 - DZA65_RS04490 0.44 -1.9 936,462 - DZA65_RS04490 0.44 +0.4 936,552 + DZA65_RS04490 0.55 -0.7 936,552 + DZA65_RS04490 0.55 -2.1 936,723 + DZA65_RS04490 0.78 -0.7 936,723 + DZA65_RS04490 0.78 -0.9 936,723 + DZA65_RS04490 0.78 +0.1 936,724 - DZA65_RS04490 0.78 +0.9 936,724 - DZA65_RS04490 0.78 +0.8 936,728 + DZA65_RS04490 0.78 -1.1 936,728 + DZA65_RS04490 0.78 +0.8 936,728 + DZA65_RS04490 0.78 -0.5 936,728 + DZA65_RS04490 0.78 +0.9 936,728 + DZA65_RS04490 0.78 -0.2 936,728 + DZA65_RS04490 0.78 -0.9 936,728 + DZA65_RS04490 0.78 -0.9 936,728 + DZA65_RS04490 0.78 -1.2 936,728 + DZA65_RS04490 0.78 -0.3 936,728 + DZA65_RS04490 0.78 -1.2 936,728 + DZA65_RS04490 0.78 -1.9 936,728 + DZA65_RS04490 0.78 -0.4 936,728 + DZA65_RS04490 0.78 -0.3 936,728 + DZA65_RS04490 0.78 -0.9 936,728 + DZA65_RS04490 0.78 -0.1 936,728 + DZA65_RS04490 0.78 +0.1 936,728 + DZA65_RS04490 0.78 -2.1 936,728 + DZA65_RS04490 0.78 -0.3 936,729 - -1.6 936,729 - DZA65_RS04490 0.78 -0.0 936,729 - DZA65_RS04490 0.78 -0.9 936,729 - DZA65_RS04490 0.78 +2.0 936,729 - DZA65_RS04490 0.78 -0.0 936,729 - DZA65_RS04490 0.78 -0.6 936,729 - +3.0 936,729 - DZA65_RS04490 0.78 -1.9 936,729 - DZA65_RS04490 0.78 -1.8 936,729 - DZA65_RS04490 0.78 +1.1 936,860 + -1.9 936,860 + -0.4 936,860 + +0.2 936,860 + +1.3 936,861 - +0.8 937,074 + DZA65_RS04495 0.18 -0.4 937,108 + DZA65_RS04495 0.21 -0.0 937,109 - DZA65_RS04495 0.21 -1.1 937,109 - DZA65_RS04495 0.21 +0.0 937,109 - DZA65_RS04495 0.21 -1.1 937,109 - DZA65_RS04495 0.21 -1.6 937,344 + DZA65_RS04495 0.44 -0.9 937,344 + DZA65_RS04495 0.44 +0.7 937,344 + DZA65_RS04495 0.44 -0.5 937,344 + DZA65_RS04495 0.44 -0.1 937,345 - DZA65_RS04495 0.44 -1.0 937,345 - DZA65_RS04495 0.44 +0.7 937,345 - DZA65_RS04495 0.44 +0.3 937,345 - DZA65_RS04495 0.44 -0.7 937,399 + DZA65_RS04495 0.49 -0.0 937,443 + DZA65_RS04495 0.53 -0.9 937,443 + DZA65_RS04495 0.53 -0.0 937,443 + DZA65_RS04495 0.53 -0.7 937,443 + DZA65_RS04495 0.53 +2.1 937,444 - DZA65_RS04495 0.53 +0.2 937,444 - DZA65_RS04495 0.53 +1.7 937,444 - DZA65_RS04495 0.53 -2.1 937,444 - DZA65_RS04495 0.53 -1.3 937,621 + DZA65_RS04495 0.70 +1.3 937,622 - DZA65_RS04495 0.70 +0.6 937,622 - DZA65_RS04495 0.70 +2.0 937,675 - DZA65_RS04495 0.75 +3.0 937,683 + DZA65_RS04495 0.76 -0.2 937,684 - DZA65_RS04495 0.76 +0.2 937,736 - DZA65_RS04495 0.81 -1.3 937,736 - DZA65_RS04495 0.81 -1.6
Or see this region's nucleotide sequence