Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04480 and DZA65_RS04485 are separated by 59 nucleotides DZA65_RS04485 and DZA65_RS04490 overlap by 8 nucleotides DZA65_RS04490 and DZA65_RS04495 overlap by 11 nucleotides
DZA65_RS04480: DZA65_RS04480 - LysR family transcriptional regulator, at 934,186 to 935,088
_RS04480
DZA65_RS04485: DZA65_RS04485 - substrate-binding domain-containing protein, at 935,148 to 936,134
_RS04485
DZA65_RS04490: DZA65_RS04490 - ribonuclease Z, at 936,127 to 936,894
_RS04490
DZA65_RS04495: DZA65_RS04495 - ABC transporter ATP-binding protein, at 936,884 to 937,933
_RS04495
Position (kb) 935
936
937 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 934.150 kb on - strand at 934.150 kb on - strand at 934.153 kb on + strand at 934.172 kb on - strand at 934.176 kb on - strand at 934.176 kb on - strand at 934.179 kb on + strand at 934.180 kb on - strand at 934.190 kb on + strand at 934.191 kb on - strand at 934.191 kb on - strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.195 kb on - strand at 934.196 kb on + strand at 934.196 kb on + strand at 934.210 kb on + strand at 934.210 kb on + strand at 934.210 kb on + strand at 934.211 kb on - strand at 934.211 kb on - strand at 934.213 kb on + strand at 934.213 kb on + strand at 934.266 kb on + strand at 934.267 kb on - strand at 934.333 kb on - strand, within DZA65_RS04480 at 934.333 kb on - strand, within DZA65_RS04480 at 934.412 kb on - strand, within DZA65_RS04480 at 934.414 kb on + strand, within DZA65_RS04480 at 934.414 kb on + strand, within DZA65_RS04480 at 934.505 kb on - strand, within DZA65_RS04480 at 934.507 kb on + strand, within DZA65_RS04480 at 934.507 kb on + strand, within DZA65_RS04480 at 934.523 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.561 kb on - strand, within DZA65_RS04480 at 934.561 kb on - strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.643 kb on - strand, within DZA65_RS04480 at 934.643 kb on - strand, within DZA65_RS04480 at 934.643 kb on - strand, within DZA65_RS04480 at 934.662 kb on + strand, within DZA65_RS04480 at 934.798 kb on + strand, within DZA65_RS04480 at 934.799 kb on - strand, within DZA65_RS04480 at 934.879 kb on - strand, within DZA65_RS04480 at 934.879 kb on - strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 935.005 kb on + strand at 935.006 kb on - strand at 935.010 kb on + strand at 935.011 kb on - strand at 935.055 kb on + strand at 935.056 kb on - strand at 935.056 kb on - strand at 935.149 kb on + strand at 935.150 kb on - strand at 935.171 kb on + strand at 935.171 kb on + strand at 935.172 kb on - strand at 935.172 kb on - strand at 935.464 kb on + strand, within DZA65_RS04485 at 935.574 kb on - strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.128 kb on + strand at 936.128 kb on + strand at 936.128 kb on + strand at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.329 kb on + strand, within DZA65_RS04490 at 936.431 kb on + strand, within DZA65_RS04490 at 936.432 kb on - strand, within DZA65_RS04490 at 936.461 kb on + strand, within DZA65_RS04490 at 936.461 kb on + strand at 936.462 kb on - strand, within DZA65_RS04490 at 936.462 kb on - strand, within DZA65_RS04490 at 936.462 kb on - strand, within DZA65_RS04490 at 936.552 kb on + strand, within DZA65_RS04490 at 936.552 kb on + strand, within DZA65_RS04490 at 936.723 kb on + strand, within DZA65_RS04490 at 936.723 kb on + strand, within DZA65_RS04490 at 936.723 kb on + strand, within DZA65_RS04490 at 936.724 kb on - strand, within DZA65_RS04490 at 936.724 kb on - strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.729 kb on - strand at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.860 kb on + strand at 936.860 kb on + strand at 936.860 kb on + strand at 936.860 kb on + strand at 936.861 kb on - strand at 937.074 kb on + strand, within DZA65_RS04495 at 937.108 kb on + strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 934,150 - -0.2 934,150 - +2.7 934,153 + +1.3 934,172 - +0.5 934,176 - +0.7 934,176 - +0.1 934,179 + +0.4 934,180 - +0.9 934,190 + -0.9 934,191 - +0.7 934,191 - -2.3 934,194 + +0.7 934,194 + -1.6 934,194 + +0.7 934,194 + +0.6 934,194 + -0.3 934,195 - -2.1 934,196 + -0.1 934,196 + -1.6 934,210 + +1.2 934,210 + +0.4 934,210 + +0.3 934,211 - -1.6 934,211 - +1.0 934,213 + -0.0 934,213 + -1.6 934,266 + -1.8 934,267 - +0.6 934,333 - DZA65_RS04480 0.16 +0.4 934,333 - DZA65_RS04480 0.16 +0.1 934,412 - DZA65_RS04480 0.25 -0.0 934,414 + DZA65_RS04480 0.25 +1.5 934,414 + DZA65_RS04480 0.25 +0.7 934,505 - DZA65_RS04480 0.35 +1.5 934,507 + DZA65_RS04480 0.36 +0.1 934,507 + DZA65_RS04480 0.36 -1.6 934,523 + DZA65_RS04480 0.37 +1.6 934,560 + DZA65_RS04480 0.41 +0.3 934,560 + DZA65_RS04480 0.41 +0.7 934,560 + DZA65_RS04480 0.41 -0.4 934,560 + DZA65_RS04480 0.41 -1.6 934,561 - DZA65_RS04480 0.42 +0.4 934,561 - DZA65_RS04480 0.42 +1.1 934,642 + DZA65_RS04480 0.50 +1.1 934,642 + DZA65_RS04480 0.50 -0.9 934,642 + DZA65_RS04480 0.50 -0.0 934,642 + DZA65_RS04480 0.50 +0.7 934,643 - DZA65_RS04480 0.51 +0.4 934,643 - DZA65_RS04480 0.51 -1.7 934,643 - DZA65_RS04480 0.51 -0.1 934,662 + DZA65_RS04480 0.53 -0.9 934,798 + DZA65_RS04480 0.68 +1.7 934,799 - DZA65_RS04480 0.68 +1.2 934,879 - DZA65_RS04480 0.77 +0.7 934,879 - DZA65_RS04480 0.77 -1.3 934,916 + DZA65_RS04480 0.81 -0.8 934,916 + DZA65_RS04480 0.81 -1.6 934,916 + DZA65_RS04480 0.81 -1.5 934,916 + DZA65_RS04480 0.81 -1.1 934,916 + DZA65_RS04480 0.81 +0.0 934,916 + DZA65_RS04480 0.81 -0.3 934,916 + DZA65_RS04480 0.81 -0.3 934,917 - DZA65_RS04480 0.81 -0.9 934,917 - DZA65_RS04480 0.81 +1.3 934,917 - DZA65_RS04480 0.81 -0.6 934,917 - DZA65_RS04480 0.81 -0.4 934,917 - +1.1 934,917 - DZA65_RS04480 0.81 -1.0 934,917 - DZA65_RS04480 0.81 +0.2 935,005 + +0.0 935,006 - +0.4 935,010 + +2.0 935,011 - -0.4 935,055 + -0.3 935,056 - +0.7 935,056 - -0.6 935,149 + +0.7 935,150 - -1.6 935,171 + -2.5 935,171 + -3.8 935,172 - +0.7 935,172 - -1.0 935,464 + DZA65_RS04485 0.32 -0.7 935,574 - DZA65_RS04485 0.43 -1.6 935,575 + DZA65_RS04485 0.43 +0.7 935,575 + DZA65_RS04485 0.43 -0.9 935,575 + DZA65_RS04485 0.43 -1.6 935,575 + DZA65_RS04485 0.43 +0.1 935,575 + DZA65_RS04485 0.43 -2.1 935,575 + DZA65_RS04485 0.43 -1.6 935,576 - DZA65_RS04485 0.43 +0.7 935,576 - DZA65_RS04485 0.43 -2.0 935,576 - DZA65_RS04485 0.43 -1.2 935,576 - DZA65_RS04485 0.43 -0.9 935,576 - DZA65_RS04485 0.43 +1.0 935,576 - DZA65_RS04485 0.43 +1.4 936,058 + +1.4 936,058 + +1.3 936,058 + +0.4 936,058 + +0.3 936,058 + -0.7 936,058 + -1.3 936,059 - +1.3 936,059 - -0.2 936,059 - -0.5 936,059 - -0.0 936,059 - -1.9 936,128 + +1.2 936,128 + +0.7 936,128 + -0.2 936,266 + DZA65_RS04490 0.18 -1.3 936,266 + DZA65_RS04490 0.18 -0.2 936,266 + DZA65_RS04490 0.18 +0.6 936,266 + DZA65_RS04490 0.18 -2.5 936,266 + DZA65_RS04490 0.18 -0.5 936,266 + DZA65_RS04490 0.18 -0.3 936,266 + DZA65_RS04490 0.18 -1.7 936,267 - DZA65_RS04490 0.18 -1.5 936,267 - DZA65_RS04490 0.18 -0.9 936,267 - DZA65_RS04490 0.18 -0.5 936,267 - DZA65_RS04490 0.18 +0.3 936,329 + DZA65_RS04490 0.26 +0.0 936,431 + DZA65_RS04490 0.40 -0.7 936,432 - DZA65_RS04490 0.40 -1.3 936,461 + DZA65_RS04490 0.43 +0.2 936,461 + -0.3 936,462 - DZA65_RS04490 0.44 -0.7 936,462 - DZA65_RS04490 0.44 -1.9 936,462 - DZA65_RS04490 0.44 +0.4 936,552 + DZA65_RS04490 0.55 -0.7 936,552 + DZA65_RS04490 0.55 -2.1 936,723 + DZA65_RS04490 0.78 -0.7 936,723 + DZA65_RS04490 0.78 -0.9 936,723 + DZA65_RS04490 0.78 +0.1 936,724 - DZA65_RS04490 0.78 +0.9 936,724 - DZA65_RS04490 0.78 +0.8 936,728 + DZA65_RS04490 0.78 -1.1 936,728 + DZA65_RS04490 0.78 +0.8 936,728 + DZA65_RS04490 0.78 -0.5 936,728 + DZA65_RS04490 0.78 +0.9 936,728 + DZA65_RS04490 0.78 -0.2 936,728 + DZA65_RS04490 0.78 -0.9 936,728 + DZA65_RS04490 0.78 -0.9 936,728 + DZA65_RS04490 0.78 -1.2 936,728 + DZA65_RS04490 0.78 -0.3 936,728 + DZA65_RS04490 0.78 -1.2 936,728 + DZA65_RS04490 0.78 -1.9 936,728 + DZA65_RS04490 0.78 -0.4 936,728 + DZA65_RS04490 0.78 -0.3 936,728 + DZA65_RS04490 0.78 -0.9 936,728 + DZA65_RS04490 0.78 -0.1 936,728 + DZA65_RS04490 0.78 +0.1 936,728 + DZA65_RS04490 0.78 -2.1 936,728 + DZA65_RS04490 0.78 -0.3 936,729 - -1.6 936,729 - DZA65_RS04490 0.78 -0.0 936,729 - DZA65_RS04490 0.78 -0.9 936,729 - DZA65_RS04490 0.78 +2.0 936,729 - DZA65_RS04490 0.78 -0.0 936,729 - DZA65_RS04490 0.78 -0.6 936,729 - +3.0 936,729 - DZA65_RS04490 0.78 -1.9 936,729 - DZA65_RS04490 0.78 -1.8 936,729 - DZA65_RS04490 0.78 +1.1 936,860 + -1.9 936,860 + -0.4 936,860 + +0.2 936,860 + +1.3 936,861 - +0.8 937,074 + DZA65_RS04495 0.18 -0.4 937,108 + DZA65_RS04495 0.21 -0.0 937,109 - DZA65_RS04495 0.21 -1.1 937,109 - DZA65_RS04495 0.21 +0.0 937,109 - DZA65_RS04495 0.21 -1.1 937,109 - DZA65_RS04495 0.21 -1.6
Or see this region's nucleotide sequence