Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04080 and DZA65_RS04085 are separated by 156 nucleotides DZA65_RS04085 and DZA65_RS04090 are separated by 54 nucleotides
DZA65_RS04080: DZA65_RS04080 - hypothetical protein, at 861,144 to 862,919
_RS04080
DZA65_RS04085: DZA65_RS04085 - phage capsid scaffolding protein, at 863,076 to 863,912
_RS04085
DZA65_RS04090: DZA65_RS04090 - phage major capsid protein, P2 family, at 863,967 to 864,995
_RS04090
Position (kb) 863
864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 862.150 kb on + strand, within DZA65_RS04080 at 862.150 kb on + strand, within DZA65_RS04080 at 862.162 kb on + strand, within DZA65_RS04080 at 862.162 kb on + strand, within DZA65_RS04080 at 862.162 kb on + strand, within DZA65_RS04080 at 862.162 kb on + strand, within DZA65_RS04080 at 862.163 kb on - strand, within DZA65_RS04080 at 862.177 kb on + strand, within DZA65_RS04080 at 862.178 kb on - strand, within DZA65_RS04080 at 862.178 kb on - strand, within DZA65_RS04080 at 862.178 kb on - strand, within DZA65_RS04080 at 862.206 kb on + strand, within DZA65_RS04080 at 862.229 kb on + strand at 862.229 kb on + strand, within DZA65_RS04080 at 862.233 kb on + strand, within DZA65_RS04080 at 862.234 kb on - strand, within DZA65_RS04080 at 862.270 kb on + strand, within DZA65_RS04080 at 862.270 kb on + strand, within DZA65_RS04080 at 862.270 kb on + strand, within DZA65_RS04080 at 862.271 kb on - strand, within DZA65_RS04080 at 862.271 kb on - strand, within DZA65_RS04080 at 862.294 kb on + strand, within DZA65_RS04080 at 862.294 kb on + strand, within DZA65_RS04080 at 862.294 kb on + strand, within DZA65_RS04080 at 862.295 kb on - strand, within DZA65_RS04080 at 862.295 kb on - strand, within DZA65_RS04080 at 862.295 kb on - strand, within DZA65_RS04080 at 862.295 kb on - strand, within DZA65_RS04080 at 862.295 kb on - strand, within DZA65_RS04080 at 862.295 kb on - strand, within DZA65_RS04080 at 862.445 kb on + strand, within DZA65_RS04080 at 862.445 kb on + strand, within DZA65_RS04080 at 862.446 kb on - strand at 862.446 kb on - strand, within DZA65_RS04080 at 862.449 kb on - strand, within DZA65_RS04080 at 862.757 kb on + strand at 862.773 kb on + strand at 862.773 kb on + strand at 862.804 kb on + strand at 862.805 kb on - strand at 862.805 kb on - strand at 862.807 kb on + strand at 862.808 kb on - strand at 862.808 kb on - strand at 862.811 kb on + strand at 862.833 kb on + strand at 862.834 kb on - strand at 862.869 kb on + strand at 862.870 kb on - strand at 862.874 kb on - strand at 862.897 kb on - strand at 862.944 kb on + strand at 862.950 kb on - strand at 863.033 kb on - strand at 863.042 kb on + strand at 863.042 kb on + strand at 863.069 kb on + strand at 863.073 kb on + strand at 863.073 kb on + strand at 863.073 kb on + strand at 863.073 kb on + strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.087 kb on - strand at 863.087 kb on - strand at 863.094 kb on - strand at 863.132 kb on + strand at 863.133 kb on - strand at 863.179 kb on - strand, within DZA65_RS04085 at 863.179 kb on - strand, within DZA65_RS04085 at 863.193 kb on + strand, within DZA65_RS04085 at 863.193 kb on + strand, within DZA65_RS04085 at 863.193 kb on + strand, within DZA65_RS04085 at 863.194 kb on - strand, within DZA65_RS04085 at 863.194 kb on - strand, within DZA65_RS04085 at 863.194 kb on - strand, within DZA65_RS04085 at 863.248 kb on + strand, within DZA65_RS04085 at 863.248 kb on + strand at 863.257 kb on + strand, within DZA65_RS04085 at 863.257 kb on + strand, within DZA65_RS04085 at 863.258 kb on - strand, within DZA65_RS04085 at 863.258 kb on - strand, within DZA65_RS04085 at 863.258 kb on - strand at 863.258 kb on - strand, within DZA65_RS04085 at 863.305 kb on + strand, within DZA65_RS04085 at 863.305 kb on + strand, within DZA65_RS04085 at 863.323 kb on + strand, within DZA65_RS04085 at 863.324 kb on - strand, within DZA65_RS04085 at 863.324 kb on - strand, within DZA65_RS04085 at 863.324 kb on - strand, within DZA65_RS04085 at 863.350 kb on + strand, within DZA65_RS04085 at 863.372 kb on - strand, within DZA65_RS04085 at 863.409 kb on + strand, within DZA65_RS04085 at 863.410 kb on - strand, within DZA65_RS04085 at 863.464 kb on + strand, within DZA65_RS04085 at 863.475 kb on - strand, within DZA65_RS04085 at 863.475 kb on - strand, within DZA65_RS04085 at 863.475 kb on - strand, within DZA65_RS04085 at 863.506 kb on + strand, within DZA65_RS04085 at 863.507 kb on - strand, within DZA65_RS04085 at 863.530 kb on + strand, within DZA65_RS04085 at 863.531 kb on - strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.550 kb on - strand, within DZA65_RS04085 at 863.550 kb on - strand, within DZA65_RS04085 at 863.562 kb on - strand, within DZA65_RS04085 at 863.562 kb on - strand, within DZA65_RS04085 at 863.573 kb on + strand, within DZA65_RS04085 at 863.574 kb on - strand, within DZA65_RS04085 at 863.574 kb on - strand, within DZA65_RS04085 at 863.588 kb on + strand, within DZA65_RS04085 at 863.589 kb on - strand, within DZA65_RS04085 at 863.589 kb on - strand, within DZA65_RS04085 at 863.646 kb on - strand, within DZA65_RS04085 at 863.693 kb on - strand, within DZA65_RS04085 at 863.753 kb on + strand, within DZA65_RS04085 at 863.808 kb on - strand, within DZA65_RS04085 at 863.852 kb on + strand at 863.853 kb on - strand at 863.859 kb on - strand at 863.910 kb on + strand at 863.910 kb on + strand at 863.911 kb on - strand at 863.911 kb on - strand at 863.943 kb on - strand at 863.966 kb on + strand at 863.966 kb on + strand at 863.967 kb on - strand at 863.967 kb on - strand at 863.975 kb on - strand at 863.994 kb on + strand at 864.007 kb on - strand at 864.007 kb on - strand at 864.252 kb on + strand, within DZA65_RS04090 at 864.252 kb on + strand, within DZA65_RS04090 at 864.252 kb on + strand, within DZA65_RS04090 at 864.252 kb on + strand, within DZA65_RS04090 at 864.253 kb on - strand, within DZA65_RS04090 at 864.253 kb on - strand, within DZA65_RS04090 at 864.253 kb on - strand, within DZA65_RS04090 at 864.253 kb on - strand, within DZA65_RS04090 at 864.254 kb on + strand, within DZA65_RS04090 at 864.254 kb on + strand, within DZA65_RS04090 at 864.254 kb on + strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.383 kb on + strand, within DZA65_RS04090 at 864.512 kb on + strand, within DZA65_RS04090 at 864.513 kb on - strand, within DZA65_RS04090 at 864.529 kb on + strand at 864.549 kb on + strand, within DZA65_RS04090 at 864.550 kb on - strand, within DZA65_RS04090 at 864.666 kb on + strand, within DZA65_RS04090 at 864.765 kb on - strand, within DZA65_RS04090 at 864.765 kb on - strand, within DZA65_RS04090 at 864.779 kb on + strand, within DZA65_RS04090 at 864.779 kb on + strand at 864.780 kb on - strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.810 kb on - strand, within DZA65_RS04090 at 864.810 kb on - strand, within DZA65_RS04090 at 864.810 kb on - strand, within DZA65_RS04090 at 864.813 kb on + strand, within DZA65_RS04090 at 864.813 kb on + strand, within DZA65_RS04090 at 864.813 kb on + strand, within DZA65_RS04090 at 864.814 kb on - strand, within DZA65_RS04090 at 864.814 kb on - strand, within DZA65_RS04090 at 864.824 kb on + strand, within DZA65_RS04090 at 864.825 kb on - strand, within DZA65_RS04090 at 864.825 kb on - strand, within DZA65_RS04090 at 864.825 kb on - strand, within DZA65_RS04090 at 864.825 kb on - strand, within DZA65_RS04090 at 864.883 kb on - strand, within DZA65_RS04090
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 862,150 + DZA65_RS04080 0.57 +0.2 862,150 + DZA65_RS04080 0.57 -0.6 862,162 + DZA65_RS04080 0.57 -2.3 862,162 + DZA65_RS04080 0.57 -0.7 862,162 + DZA65_RS04080 0.57 +0.3 862,162 + DZA65_RS04080 0.57 -1.4 862,163 - DZA65_RS04080 0.57 -1.4 862,177 + DZA65_RS04080 0.58 +0.0 862,178 - DZA65_RS04080 0.58 +1.5 862,178 - DZA65_RS04080 0.58 -1.4 862,178 - DZA65_RS04080 0.58 -0.5 862,206 + DZA65_RS04080 0.60 -1.3 862,229 + -0.3 862,229 + DZA65_RS04080 0.61 +0.3 862,233 + DZA65_RS04080 0.61 -0.8 862,234 - DZA65_RS04080 0.61 -0.3 862,270 + DZA65_RS04080 0.63 +0.7 862,270 + DZA65_RS04080 0.63 +0.9 862,270 + DZA65_RS04080 0.63 +0.7 862,271 - DZA65_RS04080 0.63 +0.7 862,271 - DZA65_RS04080 0.63 -1.4 862,294 + DZA65_RS04080 0.65 +0.9 862,294 + DZA65_RS04080 0.65 -0.6 862,294 + DZA65_RS04080 0.65 +2.1 862,295 - DZA65_RS04080 0.65 +2.0 862,295 - DZA65_RS04080 0.65 -0.6 862,295 - DZA65_RS04080 0.65 -0.3 862,295 - DZA65_RS04080 0.65 -0.4 862,295 - DZA65_RS04080 0.65 -0.8 862,295 - DZA65_RS04080 0.65 +0.6 862,445 + DZA65_RS04080 0.73 -0.9 862,445 + DZA65_RS04080 0.73 +0.9 862,446 - +0.7 862,446 - DZA65_RS04080 0.73 +0.4 862,449 - DZA65_RS04080 0.73 +0.2 862,757 + +1.0 862,773 + +3.1 862,773 + -0.3 862,804 + +0.7 862,805 - -1.4 862,805 - +0.3 862,807 + +2.0 862,808 - -0.1 862,808 - -0.8 862,811 + -2.4 862,833 + -0.3 862,834 - +0.6 862,869 + -0.2 862,870 - -1.1 862,874 - -1.3 862,897 - -1.8 862,944 + +0.6 862,950 - +1.1 863,033 - -0.8 863,042 + -0.3 863,042 + -1.7 863,069 + -0.7 863,073 + -1.6 863,073 + +0.9 863,073 + +0.1 863,073 + +1.7 863,074 - -2.7 863,074 - -0.8 863,074 - +0.6 863,074 - -1.5 863,074 - +1.0 863,074 - +0.2 863,074 - -0.7 863,074 - -1.6 863,074 - +0.4 863,087 - -0.4 863,087 - +0.5 863,094 - -1.2 863,132 + +0.7 863,133 - -1.3 863,179 - DZA65_RS04085 0.12 +0.1 863,179 - DZA65_RS04085 0.12 -0.3 863,193 + DZA65_RS04085 0.14 +1.2 863,193 + DZA65_RS04085 0.14 +1.1 863,193 + DZA65_RS04085 0.14 -1.5 863,194 - DZA65_RS04085 0.14 -1.8 863,194 - DZA65_RS04085 0.14 +0.2 863,194 - DZA65_RS04085 0.14 -0.8 863,248 + DZA65_RS04085 0.21 +0.0 863,248 + -1.6 863,257 + DZA65_RS04085 0.22 +1.3 863,257 + DZA65_RS04085 0.22 -1.3 863,258 - DZA65_RS04085 0.22 -0.3 863,258 - DZA65_RS04085 0.22 +0.6 863,258 - +3.9 863,258 - DZA65_RS04085 0.22 +0.5 863,305 + DZA65_RS04085 0.27 +1.3 863,305 + DZA65_RS04085 0.27 +0.2 863,323 + DZA65_RS04085 0.30 +1.3 863,324 - DZA65_RS04085 0.30 -0.8 863,324 - DZA65_RS04085 0.30 -2.3 863,324 - DZA65_RS04085 0.30 -2.6 863,350 + DZA65_RS04085 0.33 +0.3 863,372 - DZA65_RS04085 0.35 +0.4 863,409 + DZA65_RS04085 0.40 -0.1 863,410 - DZA65_RS04085 0.40 -0.1 863,464 + DZA65_RS04085 0.46 +0.2 863,475 - DZA65_RS04085 0.48 -0.1 863,475 - DZA65_RS04085 0.48 -1.1 863,475 - DZA65_RS04085 0.48 +0.7 863,506 + DZA65_RS04085 0.51 +0.2 863,507 - DZA65_RS04085 0.51 -0.6 863,530 + DZA65_RS04085 0.54 +0.5 863,531 - DZA65_RS04085 0.54 +0.3 863,549 + DZA65_RS04085 0.57 -1.1 863,549 + DZA65_RS04085 0.57 +0.4 863,549 + DZA65_RS04085 0.57 +1.7 863,549 + DZA65_RS04085 0.57 -1.6 863,549 + DZA65_RS04085 0.57 +0.0 863,550 - DZA65_RS04085 0.57 +1.3 863,550 - DZA65_RS04085 0.57 -0.7 863,562 - DZA65_RS04085 0.58 +0.2 863,562 - DZA65_RS04085 0.58 +0.4 863,573 + DZA65_RS04085 0.59 +0.7 863,574 - DZA65_RS04085 0.59 -1.3 863,574 - DZA65_RS04085 0.59 -1.3 863,588 + DZA65_RS04085 0.61 -0.8 863,589 - DZA65_RS04085 0.61 +1.2 863,589 - DZA65_RS04085 0.61 +0.7 863,646 - DZA65_RS04085 0.68 +0.5 863,693 - DZA65_RS04085 0.74 +0.9 863,753 + DZA65_RS04085 0.81 +0.7 863,808 - DZA65_RS04085 0.87 +0.5 863,852 + +0.7 863,853 - -0.8 863,859 - -0.5 863,910 + -0.3 863,910 + -0.3 863,911 - +0.3 863,911 - -0.8 863,943 - -0.4 863,966 + -0.3 863,966 + -0.3 863,967 - +1.2 863,967 - +0.5 863,975 - +0.0 863,994 + -0.8 864,007 - +1.9 864,007 - +0.5 864,252 + DZA65_RS04090 0.28 -0.3 864,252 + DZA65_RS04090 0.28 +0.6 864,252 + DZA65_RS04090 0.28 -1.8 864,252 + DZA65_RS04090 0.28 -0.3 864,253 - DZA65_RS04090 0.28 -0.4 864,253 - DZA65_RS04090 0.28 -1.5 864,253 - DZA65_RS04090 0.28 -3.1 864,253 - DZA65_RS04090 0.28 +2.3 864,254 + DZA65_RS04090 0.28 +1.2 864,254 + DZA65_RS04090 0.28 +0.7 864,254 + DZA65_RS04090 0.28 +0.5 864,255 - DZA65_RS04090 0.28 -1.3 864,255 - DZA65_RS04090 0.28 -1.6 864,255 - DZA65_RS04090 0.28 +1.4 864,255 - DZA65_RS04090 0.28 +0.7 864,255 - DZA65_RS04090 0.28 +0.7 864,255 - DZA65_RS04090 0.28 -0.4 864,383 + DZA65_RS04090 0.40 +0.4 864,512 + DZA65_RS04090 0.53 +0.3 864,513 - DZA65_RS04090 0.53 +1.3 864,529 + -1.3 864,549 + DZA65_RS04090 0.57 -1.3 864,550 - DZA65_RS04090 0.57 -1.6 864,666 + DZA65_RS04090 0.68 -0.1 864,765 - DZA65_RS04090 0.78 +0.3 864,765 - DZA65_RS04090 0.78 +0.5 864,779 + DZA65_RS04090 0.79 -0.1 864,779 + -1.6 864,780 - DZA65_RS04090 0.79 -1.6 864,809 + DZA65_RS04090 0.82 +0.3 864,809 + DZA65_RS04090 0.82 -1.0 864,809 + DZA65_RS04090 0.82 -2.1 864,809 + DZA65_RS04090 0.82 +1.4 864,809 + DZA65_RS04090 0.82 -0.5 864,809 + DZA65_RS04090 0.82 +0.2 864,809 + DZA65_RS04090 0.82 -0.7 864,810 - DZA65_RS04090 0.82 -0.7 864,810 - DZA65_RS04090 0.82 -0.5 864,810 - DZA65_RS04090 0.82 +0.3 864,813 + DZA65_RS04090 0.82 +0.7 864,813 + DZA65_RS04090 0.82 +1.3 864,813 + DZA65_RS04090 0.82 -2.1 864,814 - DZA65_RS04090 0.82 -0.4 864,814 - DZA65_RS04090 0.82 -1.4 864,824 + DZA65_RS04090 0.83 +0.5 864,825 - DZA65_RS04090 0.83 -0.8 864,825 - DZA65_RS04090 0.83 -2.3 864,825 - DZA65_RS04090 0.83 -2.4 864,825 - DZA65_RS04090 0.83 +0.7 864,883 - DZA65_RS04090 0.89 +2.2
Or see this region's nucleotide sequence