Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03975 and DZA65_RS22805 are separated by 7 nucleotides DZA65_RS22805 and DZA65_RS03980 overlap by 4 nucleotides DZA65_RS03980 and DZA65_RS03985 are separated by 528 nucleotides DZA65_RS03985 and DZA65_RS03995 are separated by 441 nucleotides
DZA65_RS03975: DZA65_RS03975 - ash family protein, at 843,039 to 843,395
_RS03975
DZA65_RS22805: DZA65_RS22805 - hypothetical protein, at 843,403 to 843,549
_RS22805
DZA65_RS03980: DZA65_RS03980 - AlpA family transcriptional regulator, at 843,546 to 843,806
_RS03980
DZA65_RS03985: DZA65_RS03985 - phage capsid size determination protein, at 844,335 to 845,081
_RS03985
DZA65_RS03995: DZA65_RS03995 - AAA family ATPase, at 845,523 to 847,271
_RS03995
Position (kb) 844
845
846 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.380 kb on + strand at 843.381 kb on - strand at 843.444 kb on - strand, within DZA65_RS22805 at 843.534 kb on + strand, within DZA65_RS22805 at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.680 kb on - strand, within DZA65_RS03980 at 843.699 kb on - strand, within DZA65_RS03980 at 843.859 kb on + strand at 843.866 kb on + strand at 843.866 kb on + strand at 843.866 kb on + strand at 843.867 kb on - strand at 843.867 kb on - strand at 843.874 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.885 kb on + strand at 843.947 kb on + strand at 843.973 kb on + strand at 843.974 kb on - strand at 843.984 kb on - strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.997 kb on - strand at 844.020 kb on - strand at 844.029 kb on + strand at 844.030 kb on - strand at 844.033 kb on + strand at 844.033 kb on + strand at 844.033 kb on + strand at 844.034 kb on - strand at 844.034 kb on - strand at 844.034 kb on - strand at 844.034 kb on - strand at 844.035 kb on + strand at 844.036 kb on - strand at 844.036 kb on - strand at 844.051 kb on - strand at 844.053 kb on + strand at 844.110 kb on + strand at 844.110 kb on + strand at 844.110 kb on + strand at 844.111 kb on - strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.159 kb on - strand at 844.193 kb on + strand at 844.206 kb on + strand at 844.207 kb on - strand at 844.208 kb on + strand at 844.246 kb on + strand at 844.246 kb on + strand at 844.315 kb on + strand at 844.315 kb on + strand at 844.315 kb on + strand at 844.316 kb on - strand at 844.316 kb on - strand at 844.316 kb on - strand at 844.330 kb on - strand at 844.349 kb on + strand at 844.349 kb on + strand at 844.349 kb on + strand at 844.349 kb on + strand at 844.349 kb on + strand at 844.349 kb on + strand at 844.350 kb on - strand at 844.350 kb on - strand at 844.350 kb on - strand at 844.410 kb on + strand, within DZA65_RS03985 at 844.410 kb on + strand, within DZA65_RS03985 at 844.410 kb on + strand, within DZA65_RS03985 at 844.410 kb on + strand, within DZA65_RS03985 at 844.410 kb on + strand, within DZA65_RS03985 at 844.411 kb on - strand, within DZA65_RS03985 at 844.411 kb on - strand, within DZA65_RS03985 at 844.411 kb on - strand, within DZA65_RS03985 at 844.411 kb on - strand, within DZA65_RS03985 at 844.411 kb on - strand, within DZA65_RS03985 at 844.457 kb on + strand, within DZA65_RS03985 at 844.458 kb on - strand, within DZA65_RS03985 at 844.597 kb on + strand, within DZA65_RS03985 at 844.598 kb on - strand, within DZA65_RS03985 at 844.598 kb on - strand at 844.632 kb on + strand, within DZA65_RS03985 at 844.632 kb on + strand, within DZA65_RS03985 at 844.632 kb on + strand, within DZA65_RS03985 at 844.632 kb on + strand, within DZA65_RS03985 at 844.633 kb on - strand, within DZA65_RS03985 at 844.633 kb on - strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.713 kb on - strand, within DZA65_RS03985 at 844.713 kb on - strand, within DZA65_RS03985 at 844.713 kb on - strand, within DZA65_RS03985 at 844.756 kb on + strand, within DZA65_RS03985 at 844.756 kb on + strand, within DZA65_RS03985 at 844.756 kb on + strand, within DZA65_RS03985 at 844.776 kb on - strand, within DZA65_RS03985 at 844.781 kb on + strand, within DZA65_RS03985 at 844.781 kb on + strand, within DZA65_RS03985 at 844.807 kb on + strand, within DZA65_RS03985 at 844.807 kb on + strand, within DZA65_RS03985 at 844.844 kb on + strand, within DZA65_RS03985 at 844.922 kb on + strand, within DZA65_RS03985 at 844.923 kb on - strand, within DZA65_RS03985 at 845.091 kb on + strand at 845.091 kb on + strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.121 kb on + strand at 845.121 kb on + strand at 845.121 kb on + strand at 845.122 kb on - strand at 845.133 kb on - strand at 845.133 kb on - strand at 845.194 kb on + strand at 845.194 kb on + strand at 845.194 kb on + strand at 845.195 kb on - strand at 845.198 kb on + strand at 845.198 kb on + strand at 845.198 kb on + strand at 845.198 kb on + strand at 845.199 kb on - strand at 845.199 kb on - strand at 845.199 kb on - strand at 845.199 kb on - strand at 845.251 kb on + strand at 845.251 kb on + strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.278 kb on - strand at 845.290 kb on + strand at 845.296 kb on + strand at 845.296 kb on + strand at 845.306 kb on + strand at 845.338 kb on - strand at 845.351 kb on + strand at 845.352 kb on - strand at 845.353 kb on + strand at 845.362 kb on + strand at 845.362 kb on + strand at 845.363 kb on - strand at 845.378 kb on + strand at 845.378 kb on + strand at 845.378 kb on + strand at 845.378 kb on + strand at 845.379 kb on - strand at 845.387 kb on + strand at 845.387 kb on + strand at 845.388 kb on - strand at 845.418 kb on + strand at 845.419 kb on - strand at 845.419 kb on - strand at 845.479 kb on + strand at 845.479 kb on + strand at 845.479 kb on + strand at 845.482 kb on - strand at 845.531 kb on - strand at 845.562 kb on - strand at 845.633 kb on + strand at 845.679 kb on - strand at 845.896 kb on - strand, within DZA65_RS03995 at 845.909 kb on + strand, within DZA65_RS03995 at 845.910 kb on - strand, within DZA65_RS03995
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 843,338 + DZA65_RS03975 0.84 +0.0 843,338 + DZA65_RS03975 0.84 +1.8 843,338 + DZA65_RS03975 0.84 +0.9 843,338 + DZA65_RS03975 0.84 +0.4 843,338 + DZA65_RS03975 0.84 -1.2 843,338 + DZA65_RS03975 0.84 -0.8 843,338 + DZA65_RS03975 0.84 +1.5 843,338 + DZA65_RS03975 0.84 +0.4 843,338 + DZA65_RS03975 0.84 +3.0 843,338 + DZA65_RS03975 0.84 +0.1 843,338 + DZA65_RS03975 0.84 -1.4 843,338 + DZA65_RS03975 0.84 +0.1 843,338 + DZA65_RS03975 0.84 +0.2 843,339 - DZA65_RS03975 0.84 +0.1 843,339 - DZA65_RS03975 0.84 +0.2 843,339 - DZA65_RS03975 0.84 -0.2 843,339 - DZA65_RS03975 0.84 -2.4 843,339 - DZA65_RS03975 0.84 +0.5 843,339 - DZA65_RS03975 0.84 +1.8 843,339 - DZA65_RS03975 0.84 +0.2 843,339 - DZA65_RS03975 0.84 +1.5 843,339 - DZA65_RS03975 0.84 +0.1 843,380 + -0.0 843,381 - +1.0 843,444 - DZA65_RS22805 0.28 -0.6 843,534 + DZA65_RS22805 0.89 +0.5 843,538 + +0.1 843,538 + +0.6 843,538 + -0.7 843,538 + +0.3 843,538 + -0.2 843,538 + -1.6 843,538 + +1.2 843,538 + +1.2 843,538 + +0.7 843,538 + -2.6 843,539 - +0.1 843,539 - +0.5 843,539 - -0.2 843,539 - -1.2 843,539 - +0.0 843,539 - -0.4 843,680 - DZA65_RS03980 0.51 +0.8 843,699 - DZA65_RS03980 0.59 +0.8 843,859 + -0.2 843,866 + +0.0 843,866 + -0.1 843,866 + +1.5 843,867 - -2.2 843,867 - -0.8 843,874 + +0.5 843,877 + -0.8 843,877 + +0.2 843,877 + +0.5 843,877 + +0.2 843,877 + +0.3 843,877 + -0.2 843,877 + +0.8 843,878 - -0.0 843,878 - +0.5 843,878 - -1.0 843,878 - +0.9 843,878 - +0.1 843,878 - +0.2 843,878 - -1.4 843,878 - -1.0 843,878 - -1.9 843,885 + -0.4 843,947 + -1.8 843,973 + +0.3 843,974 - +0.7 843,984 - +0.9 843,985 + +0.7 843,985 + -1.3 843,985 + +1.2 843,985 + -0.1 843,985 + +1.3 843,985 + +0.7 843,986 - -0.7 843,986 - -1.3 843,986 - +1.7 843,986 - -0.4 843,986 - -1.8 843,986 - +0.2 843,986 - +0.7 843,997 - +0.7 844,020 - +0.1 844,029 + -1.6 844,030 - +0.7 844,033 + -1.1 844,033 + -1.8 844,033 + -0.3 844,034 - -0.6 844,034 - -2.2 844,034 - -0.3 844,034 - +0.9 844,035 + +0.2 844,036 - -2.6 844,036 - -1.0 844,051 - +0.0 844,053 + +1.6 844,110 + +0.7 844,110 + -0.1 844,110 + -1.6 844,111 - -0.5 844,133 + -1.3 844,133 + -1.4 844,133 + +1.1 844,133 + -1.8 844,133 + +0.2 844,133 + +0.2 844,133 + -0.7 844,133 + +0.7 844,133 + -0.7 844,133 + -0.1 844,134 - +0.3 844,134 - -0.2 844,134 - -3.0 844,134 - -0.7 844,134 - -0.1 844,134 - +0.1 844,134 - -1.3 844,134 - -1.3 844,134 - -0.3 844,134 - +0.7 844,134 - +0.5 844,134 - +0.4 844,159 - -2.3 844,193 + -0.0 844,206 + +2.3 844,207 - -0.3 844,208 + -0.1 844,246 + -0.8 844,246 + +0.5 844,315 + +1.3 844,315 + +0.5 844,315 + -0.0 844,316 - +2.0 844,316 - -1.4 844,316 - -1.3 844,330 - +0.2 844,349 + -2.1 844,349 + +0.7 844,349 + +0.7 844,349 + -0.4 844,349 + +0.6 844,349 + +0.3 844,350 - +0.7 844,350 - -0.8 844,350 - +0.0 844,410 + DZA65_RS03985 0.10 -1.7 844,410 + DZA65_RS03985 0.10 +0.4 844,410 + DZA65_RS03985 0.10 -1.6 844,410 + DZA65_RS03985 0.10 -1.1 844,410 + DZA65_RS03985 0.10 +0.4 844,411 - DZA65_RS03985 0.10 +0.8 844,411 - DZA65_RS03985 0.10 -2.7 844,411 - DZA65_RS03985 0.10 -0.6 844,411 - DZA65_RS03985 0.10 +0.3 844,411 - DZA65_RS03985 0.10 +0.4 844,457 + DZA65_RS03985 0.16 -0.3 844,458 - DZA65_RS03985 0.16 +1.9 844,597 + DZA65_RS03985 0.35 +0.7 844,598 - DZA65_RS03985 0.35 +0.4 844,598 - -0.3 844,632 + DZA65_RS03985 0.40 +1.4 844,632 + DZA65_RS03985 0.40 -0.3 844,632 + DZA65_RS03985 0.40 +0.4 844,632 + DZA65_RS03985 0.40 +0.2 844,633 - DZA65_RS03985 0.40 -1.6 844,633 - DZA65_RS03985 0.40 -1.4 844,712 + DZA65_RS03985 0.50 +0.7 844,712 + DZA65_RS03985 0.50 -0.0 844,712 + DZA65_RS03985 0.50 -0.6 844,712 + DZA65_RS03985 0.50 +1.0 844,713 - DZA65_RS03985 0.51 +0.7 844,713 - DZA65_RS03985 0.51 +0.0 844,713 - DZA65_RS03985 0.51 +0.2 844,756 + DZA65_RS03985 0.56 +1.3 844,756 + DZA65_RS03985 0.56 +1.3 844,756 + DZA65_RS03985 0.56 +1.7 844,776 - DZA65_RS03985 0.59 -1.0 844,781 + DZA65_RS03985 0.60 -0.3 844,781 + DZA65_RS03985 0.60 +0.5 844,807 + DZA65_RS03985 0.63 -1.6 844,807 + DZA65_RS03985 0.63 -2.6 844,844 + DZA65_RS03985 0.68 -1.1 844,922 + DZA65_RS03985 0.79 +1.1 844,923 - DZA65_RS03985 0.79 +1.2 845,091 + -0.8 845,091 + -1.8 845,092 - +0.3 845,092 - +0.7 845,092 - +0.2 845,092 - -1.3 845,092 - +0.7 845,092 - +0.3 845,092 - -1.7 845,092 - -0.8 845,092 - +1.5 845,092 - -1.3 845,092 - +0.7 845,092 - -2.3 845,092 - -0.3 845,093 + -1.3 845,093 + +0.2 845,093 + +1.3 845,093 + +1.0 845,093 + -0.1 845,094 - -1.3 845,094 - +0.5 845,094 - -0.8 845,094 - -2.1 845,094 - -1.6 845,121 + +0.7 845,121 + +0.7 845,121 + +0.1 845,122 - -1.3 845,133 - +0.7 845,133 - -1.3 845,194 + +1.1 845,194 + +0.2 845,194 + -2.3 845,195 - +0.3 845,198 + +0.0 845,198 + +0.6 845,198 + +0.7 845,198 + +0.0 845,199 - +0.4 845,199 - +0.1 845,199 - +0.7 845,199 - -1.8 845,251 + +0.4 845,251 + +0.7 845,252 - +2.0 845,252 - -0.8 845,252 - -1.5 845,252 - -0.8 845,252 - +0.5 845,278 - +1.0 845,290 + -0.3 845,296 + +0.2 845,296 + -0.3 845,306 + +0.1 845,338 - +2.9 845,351 + +1.5 845,352 - +1.0 845,353 + +0.9 845,362 + -0.1 845,362 + +0.2 845,363 - -1.8 845,378 + +0.6 845,378 + -0.2 845,378 + +0.3 845,378 + +1.2 845,379 - +1.7 845,387 + -0.6 845,387 + +0.6 845,388 - +0.2 845,418 + +0.5 845,419 - +0.7 845,419 - -0.3 845,479 + -0.4 845,479 + +0.7 845,479 + -0.1 845,482 - +1.2 845,531 - -2.3 845,562 - +1.2 845,633 + +1.2 845,679 - +1.6 845,896 - DZA65_RS03995 0.21 +1.2 845,909 + DZA65_RS03995 0.22 +1.3 845,910 - DZA65_RS03995 0.22 +0.3
Or see this region's nucleotide sequence