Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03565 and DZA65_RS03570 overlap by 10 nucleotides DZA65_RS03570 and DZA65_RS03575 are separated by 91 nucleotides DZA65_RS03575 and DZA65_RS03580 are separated by 0 nucleotides
DZA65_RS03565: DZA65_RS03565 - HNH endonuclease, at 750,094 to 750,591
_RS03565
DZA65_RS03570: DZA65_RS03570 - hypothetical protein, at 750,582 to 750,998
_RS03570
DZA65_RS03575: DZA65_RS03575 - hypothetical protein, at 751,090 to 751,509
_RS03575
DZA65_RS03580: DZA65_RS03580 - tyrosine-type recombinase/integrase, at 751,510 to 752,718
_RS03580
Position (kb) 751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 750.259 kb on + strand, within DZA65_RS03565 at 750.274 kb on - strand, within DZA65_RS03565 at 750.276 kb on + strand, within DZA65_RS03565 at 750.277 kb on - strand, within DZA65_RS03565 at 750.277 kb on - strand, within DZA65_RS03565 at 750.278 kb on + strand, within DZA65_RS03565 at 750.278 kb on + strand, within DZA65_RS03565 at 750.278 kb on + strand at 750.318 kb on + strand, within DZA65_RS03565 at 750.319 kb on - strand, within DZA65_RS03565 at 750.340 kb on - strand, within DZA65_RS03565 at 750.348 kb on + strand, within DZA65_RS03565 at 750.372 kb on - strand, within DZA65_RS03565 at 750.424 kb on - strand, within DZA65_RS03565 at 750.442 kb on - strand, within DZA65_RS03565 at 750.455 kb on + strand, within DZA65_RS03565 at 750.466 kb on + strand, within DZA65_RS03565 at 750.589 kb on + strand at 750.602 kb on + strand at 750.603 kb on - strand at 750.701 kb on - strand, within DZA65_RS03570 at 750.704 kb on + strand, within DZA65_RS03570 at 750.802 kb on + strand, within DZA65_RS03570 at 750.802 kb on + strand, within DZA65_RS03570 at 750.867 kb on + strand, within DZA65_RS03570 at 750.868 kb on - strand, within DZA65_RS03570 at 750.871 kb on + strand, within DZA65_RS03570 at 750.872 kb on - strand, within DZA65_RS03570 at 750.874 kb on + strand, within DZA65_RS03570 at 750.915 kb on + strand, within DZA65_RS03570 at 750.916 kb on - strand, within DZA65_RS03570 at 750.920 kb on + strand, within DZA65_RS03570 at 750.924 kb on + strand, within DZA65_RS03570 at 750.927 kb on + strand, within DZA65_RS03570 at 750.928 kb on - strand, within DZA65_RS03570 at 750.966 kb on - strand at 751.021 kb on + strand at 751.021 kb on + strand at 751.048 kb on + strand at 751.057 kb on + strand at 751.057 kb on + strand at 751.057 kb on + strand at 751.058 kb on - strand at 751.058 kb on - strand at 751.086 kb on + strand at 751.086 kb on + strand at 751.156 kb on + strand, within DZA65_RS03575 at 751.168 kb on + strand, within DZA65_RS03575 at 751.169 kb on - strand, within DZA65_RS03575 at 751.174 kb on + strand, within DZA65_RS03575 at 751.174 kb on + strand, within DZA65_RS03575 at 751.174 kb on + strand, within DZA65_RS03575 at 751.174 kb on + strand, within DZA65_RS03575 at 751.174 kb on + strand, within DZA65_RS03575 at 751.174 kb on + strand, within DZA65_RS03575 at 751.174 kb on + strand, within DZA65_RS03575 at 751.175 kb on - strand, within DZA65_RS03575 at 751.175 kb on - strand, within DZA65_RS03575 at 751.175 kb on - strand at 751.175 kb on - strand, within DZA65_RS03575 at 751.175 kb on - strand, within DZA65_RS03575 at 751.177 kb on - strand, within DZA65_RS03575 at 751.177 kb on - strand, within DZA65_RS03575 at 751.287 kb on + strand, within DZA65_RS03575 at 751.288 kb on - strand, within DZA65_RS03575 at 751.292 kb on - strand, within DZA65_RS03575 at 751.292 kb on - strand, within DZA65_RS03575 at 751.292 kb on - strand, within DZA65_RS03575 at 751.292 kb on - strand, within DZA65_RS03575 at 751.306 kb on + strand, within DZA65_RS03575 at 751.307 kb on - strand, within DZA65_RS03575 at 751.315 kb on + strand, within DZA65_RS03575 at 751.316 kb on - strand, within DZA65_RS03575 at 751.330 kb on + strand, within DZA65_RS03575 at 751.330 kb on + strand, within DZA65_RS03575 at 751.330 kb on + strand, within DZA65_RS03575 at 751.330 kb on + strand, within DZA65_RS03575 at 751.346 kb on + strand, within DZA65_RS03575 at 751.347 kb on - strand, within DZA65_RS03575 at 751.347 kb on - strand, within DZA65_RS03575 at 751.377 kb on + strand, within DZA65_RS03575 at 751.377 kb on + strand, within DZA65_RS03575 at 751.382 kb on - strand, within DZA65_RS03575 at 751.389 kb on + strand, within DZA65_RS03575 at 751.389 kb on + strand, within DZA65_RS03575 at 751.390 kb on - strand, within DZA65_RS03575 at 751.431 kb on + strand, within DZA65_RS03575 at 751.431 kb on + strand, within DZA65_RS03575 at 751.431 kb on + strand, within DZA65_RS03575 at 751.431 kb on + strand, within DZA65_RS03575 at 751.431 kb on + strand, within DZA65_RS03575 at 751.432 kb on - strand, within DZA65_RS03575 at 751.435 kb on - strand, within DZA65_RS03575 at 751.440 kb on + strand, within DZA65_RS03575 at 751.440 kb on + strand, within DZA65_RS03575 at 751.451 kb on + strand at 751.457 kb on + strand, within DZA65_RS03575 at 751.457 kb on + strand, within DZA65_RS03575 at 751.469 kb on + strand at 751.498 kb on - strand at 751.530 kb on - strand at 751.530 kb on - strand at 751.530 kb on - strand at 751.540 kb on + strand at 751.553 kb on + strand at 751.553 kb on + strand at 751.553 kb on + strand at 751.553 kb on + strand at 751.553 kb on + strand at 751.553 kb on + strand at 751.571 kb on - strand at 751.590 kb on - strand at 751.590 kb on - strand at 751.644 kb on + strand, within DZA65_RS03580 at 751.644 kb on + strand, within DZA65_RS03580 at 751.698 kb on + strand, within DZA65_RS03580 at 751.699 kb on - strand, within DZA65_RS03580 at 751.729 kb on + strand, within DZA65_RS03580 at 751.737 kb on + strand, within DZA65_RS03580 at 751.738 kb on - strand, within DZA65_RS03580 at 751.738 kb on - strand, within DZA65_RS03580 at 751.766 kb on + strand, within DZA65_RS03580 at 751.767 kb on - strand, within DZA65_RS03580 at 751.767 kb on - strand, within DZA65_RS03580 at 751.823 kb on + strand, within DZA65_RS03580 at 751.823 kb on + strand, within DZA65_RS03580 at 751.823 kb on + strand, within DZA65_RS03580 at 751.823 kb on + strand, within DZA65_RS03580 at 751.823 kb on + strand, within DZA65_RS03580 at 751.823 kb on + strand, within DZA65_RS03580 at 751.824 kb on - strand, within DZA65_RS03580 at 751.824 kb on - strand, within DZA65_RS03580 at 751.824 kb on - strand, within DZA65_RS03580 at 751.824 kb on - strand, within DZA65_RS03580 at 751.824 kb on - strand, within DZA65_RS03580 at 751.831 kb on + strand, within DZA65_RS03580 at 751.831 kb on + strand, within DZA65_RS03580 at 751.832 kb on - strand, within DZA65_RS03580 at 751.832 kb on - strand, within DZA65_RS03580 at 751.879 kb on + strand, within DZA65_RS03580 at 751.880 kb on - strand, within DZA65_RS03580 at 751.923 kb on + strand, within DZA65_RS03580 at 751.928 kb on - strand, within DZA65_RS03580 at 751.928 kb on - strand, within DZA65_RS03580 at 751.947 kb on + strand, within DZA65_RS03580 at 751.948 kb on - strand, within DZA65_RS03580 at 751.948 kb on - strand, within DZA65_RS03580 at 751.948 kb on - strand, within DZA65_RS03580 at 751.948 kb on - strand, within DZA65_RS03580 at 752.007 kb on + strand, within DZA65_RS03580 at 752.007 kb on + strand, within DZA65_RS03580 at 752.007 kb on + strand, within DZA65_RS03580 at 752.041 kb on + strand, within DZA65_RS03580 at 752.041 kb on + strand, within DZA65_RS03580 at 752.041 kb on + strand, within DZA65_RS03580 at 752.042 kb on - strand, within DZA65_RS03580 at 752.059 kb on - strand, within DZA65_RS03580 at 752.061 kb on + strand, within DZA65_RS03580 at 752.061 kb on + strand, within DZA65_RS03580 at 752.075 kb on - strand, within DZA65_RS03580 at 752.158 kb on + strand, within DZA65_RS03580 at 752.159 kb on - strand, within DZA65_RS03580 at 752.159 kb on - strand, within DZA65_RS03580 at 752.159 kb on - strand, within DZA65_RS03580 at 752.159 kb on - strand, within DZA65_RS03580 at 752.159 kb on - strand, within DZA65_RS03580 at 752.159 kb on - strand, within DZA65_RS03580 at 752.160 kb on + strand, within DZA65_RS03580 at 752.160 kb on + strand, within DZA65_RS03580 at 752.160 kb on + strand, within DZA65_RS03580 at 752.160 kb on + strand, within DZA65_RS03580 at 752.160 kb on + strand, within DZA65_RS03580 at 752.160 kb on + strand, within DZA65_RS03580 at 752.161 kb on - strand, within DZA65_RS03580 at 752.161 kb on - strand, within DZA65_RS03580 at 752.169 kb on - strand, within DZA65_RS03580 at 752.183 kb on + strand, within DZA65_RS03580 at 752.184 kb on - strand, within DZA65_RS03580 at 752.189 kb on + strand, within DZA65_RS03580 at 752.189 kb on + strand, within DZA65_RS03580 at 752.190 kb on - strand, within DZA65_RS03580 at 752.190 kb on - strand, within DZA65_RS03580 at 752.190 kb on - strand, within DZA65_RS03580 at 752.213 kb on + strand, within DZA65_RS03580 at 752.213 kb on + strand, within DZA65_RS03580 at 752.214 kb on - strand, within DZA65_RS03580 at 752.214 kb on - strand, within DZA65_RS03580 at 752.259 kb on + strand, within DZA65_RS03580 at 752.260 kb on - strand, within DZA65_RS03580 at 752.293 kb on + strand, within DZA65_RS03580 at 752.293 kb on + strand, within DZA65_RS03580 at 752.293 kb on + strand, within DZA65_RS03580 at 752.294 kb on - strand, within DZA65_RS03580 at 752.301 kb on + strand, within DZA65_RS03580 at 752.314 kb on + strand, within DZA65_RS03580 at 752.314 kb on + strand, within DZA65_RS03580 at 752.314 kb on + strand, within DZA65_RS03580 at 752.314 kb on + strand, within DZA65_RS03580 at 752.314 kb on + strand, within DZA65_RS03580 at 752.356 kb on + strand, within DZA65_RS03580 at 752.357 kb on - strand, within DZA65_RS03580 at 752.384 kb on + strand, within DZA65_RS03580 at 752.385 kb on - strand, within DZA65_RS03580 at 752.396 kb on + strand, within DZA65_RS03580 at 752.396 kb on + strand, within DZA65_RS03580 at 752.397 kb on - strand, within DZA65_RS03580 at 752.450 kb on - strand, within DZA65_RS03580 at 752.450 kb on - strand, within DZA65_RS03580 at 752.458 kb on + strand, within DZA65_RS03580 at 752.459 kb on - strand, within DZA65_RS03580 at 752.488 kb on + strand, within DZA65_RS03580 at 752.488 kb on + strand, within DZA65_RS03580 at 752.492 kb on - strand, within DZA65_RS03580 at 752.492 kb on - strand, within DZA65_RS03580 at 752.494 kb on + strand, within DZA65_RS03580
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 750,259 + DZA65_RS03565 0.33 +0.7 750,274 - DZA65_RS03565 0.36 +1.3 750,276 + DZA65_RS03565 0.37 +3.1 750,277 - DZA65_RS03565 0.37 +1.0 750,277 - DZA65_RS03565 0.37 -0.2 750,278 + DZA65_RS03565 0.37 +1.0 750,278 + DZA65_RS03565 0.37 +0.7 750,278 + +1.4 750,318 + DZA65_RS03565 0.45 +0.8 750,319 - DZA65_RS03565 0.45 +2.3 750,340 - DZA65_RS03565 0.49 +0.6 750,348 + DZA65_RS03565 0.51 -1.0 750,372 - DZA65_RS03565 0.56 +0.8 750,424 - DZA65_RS03565 0.66 -1.8 750,442 - DZA65_RS03565 0.70 +1.0 750,455 + DZA65_RS03565 0.72 -1.2 750,466 + DZA65_RS03565 0.75 +0.4 750,589 + +1.8 750,602 + +0.3 750,603 - -0.5 750,701 - DZA65_RS03570 0.29 +0.5 750,704 + DZA65_RS03570 0.29 -1.8 750,802 + DZA65_RS03570 0.53 +1.4 750,802 + DZA65_RS03570 0.53 +0.7 750,867 + DZA65_RS03570 0.68 +2.1 750,868 - DZA65_RS03570 0.69 -0.8 750,871 + DZA65_RS03570 0.69 -2.2 750,872 - DZA65_RS03570 0.70 -1.9 750,874 + DZA65_RS03570 0.70 +0.5 750,915 + DZA65_RS03570 0.80 +0.1 750,916 - DZA65_RS03570 0.80 -3.1 750,920 + DZA65_RS03570 0.81 +0.3 750,924 + DZA65_RS03570 0.82 +0.4 750,927 + DZA65_RS03570 0.83 -1.0 750,928 - DZA65_RS03570 0.83 +0.1 750,966 - +0.1 751,021 + +1.0 751,021 + -0.0 751,048 + +0.8 751,057 + -0.7 751,057 + -0.7 751,057 + -1.1 751,058 - -0.5 751,058 - -1.5 751,086 + +1.5 751,086 + -1.2 751,156 + DZA65_RS03575 0.16 +1.5 751,168 + DZA65_RS03575 0.19 -0.8 751,169 - DZA65_RS03575 0.19 +0.3 751,174 + DZA65_RS03575 0.20 +2.3 751,174 + DZA65_RS03575 0.20 +0.5 751,174 + DZA65_RS03575 0.20 -1.8 751,174 + DZA65_RS03575 0.20 -0.7 751,174 + DZA65_RS03575 0.20 -0.1 751,174 + DZA65_RS03575 0.20 +0.0 751,174 + DZA65_RS03575 0.20 +1.8 751,175 - DZA65_RS03575 0.20 +1.2 751,175 - DZA65_RS03575 0.20 +0.4 751,175 - +2.8 751,175 - DZA65_RS03575 0.20 +0.9 751,175 - DZA65_RS03575 0.20 -2.2 751,177 - DZA65_RS03575 0.21 -1.0 751,177 - DZA65_RS03575 0.21 -0.5 751,287 + DZA65_RS03575 0.47 +0.3 751,288 - DZA65_RS03575 0.47 +0.2 751,292 - DZA65_RS03575 0.48 +1.9 751,292 - DZA65_RS03575 0.48 +2.6 751,292 - DZA65_RS03575 0.48 +1.6 751,292 - DZA65_RS03575 0.48 +0.1 751,306 + DZA65_RS03575 0.51 -0.9 751,307 - DZA65_RS03575 0.52 -1.4 751,315 + DZA65_RS03575 0.54 -1.1 751,316 - DZA65_RS03575 0.54 +1.1 751,330 + DZA65_RS03575 0.57 -0.1 751,330 + DZA65_RS03575 0.57 +0.4 751,330 + DZA65_RS03575 0.57 +0.1 751,330 + DZA65_RS03575 0.57 -0.4 751,346 + DZA65_RS03575 0.61 -0.7 751,347 - DZA65_RS03575 0.61 -0.5 751,347 - DZA65_RS03575 0.61 -0.5 751,377 + DZA65_RS03575 0.68 +0.3 751,377 + DZA65_RS03575 0.68 +0.2 751,382 - DZA65_RS03575 0.70 -0.3 751,389 + DZA65_RS03575 0.71 -1.5 751,389 + DZA65_RS03575 0.71 -1.2 751,390 - DZA65_RS03575 0.71 -0.5 751,431 + DZA65_RS03575 0.81 -0.1 751,431 + DZA65_RS03575 0.81 -1.4 751,431 + DZA65_RS03575 0.81 +0.1 751,431 + DZA65_RS03575 0.81 +1.6 751,431 + DZA65_RS03575 0.81 -0.5 751,432 - DZA65_RS03575 0.81 +1.2 751,435 - DZA65_RS03575 0.82 -0.8 751,440 + DZA65_RS03575 0.83 -1.5 751,440 + DZA65_RS03575 0.83 +0.5 751,451 + +2.8 751,457 + DZA65_RS03575 0.87 -0.0 751,457 + DZA65_RS03575 0.87 +1.4 751,469 + +0.6 751,498 - +0.2 751,530 - +0.8 751,530 - -0.9 751,530 - +1.3 751,540 + +0.8 751,553 + -3.5 751,553 + +0.3 751,553 + +0.8 751,553 + +0.6 751,553 + +0.2 751,553 + +0.8 751,571 - +0.3 751,590 - +0.8 751,590 - +0.9 751,644 + DZA65_RS03580 0.11 -1.8 751,644 + DZA65_RS03580 0.11 -0.6 751,698 + DZA65_RS03580 0.16 -1.2 751,699 - DZA65_RS03580 0.16 +1.1 751,729 + DZA65_RS03580 0.18 -0.1 751,737 + DZA65_RS03580 0.19 -0.5 751,738 - DZA65_RS03580 0.19 -0.1 751,738 - DZA65_RS03580 0.19 -1.5 751,766 + DZA65_RS03580 0.21 +0.3 751,767 - DZA65_RS03580 0.21 -1.8 751,767 - DZA65_RS03580 0.21 +1.2 751,823 + DZA65_RS03580 0.26 -0.2 751,823 + DZA65_RS03580 0.26 +0.1 751,823 + DZA65_RS03580 0.26 -0.8 751,823 + DZA65_RS03580 0.26 -1.5 751,823 + DZA65_RS03580 0.26 -0.6 751,823 + DZA65_RS03580 0.26 +1.2 751,824 - DZA65_RS03580 0.26 +0.6 751,824 - DZA65_RS03580 0.26 +0.4 751,824 - DZA65_RS03580 0.26 -1.8 751,824 - DZA65_RS03580 0.26 -0.5 751,824 - DZA65_RS03580 0.26 -0.1 751,831 + DZA65_RS03580 0.27 +0.2 751,831 + DZA65_RS03580 0.27 +1.3 751,832 - DZA65_RS03580 0.27 -1.6 751,832 - DZA65_RS03580 0.27 +0.4 751,879 + DZA65_RS03580 0.31 -1.5 751,880 - DZA65_RS03580 0.31 -1.2 751,923 + DZA65_RS03580 0.34 +0.9 751,928 - DZA65_RS03580 0.35 -0.7 751,928 - DZA65_RS03580 0.35 -0.1 751,947 + DZA65_RS03580 0.36 -0.5 751,948 - DZA65_RS03580 0.36 -0.8 751,948 - DZA65_RS03580 0.36 +1.2 751,948 - DZA65_RS03580 0.36 +0.8 751,948 - DZA65_RS03580 0.36 -0.5 752,007 + DZA65_RS03580 0.41 -1.0 752,007 + DZA65_RS03580 0.41 -2.4 752,007 + DZA65_RS03580 0.41 +0.1 752,041 + DZA65_RS03580 0.44 +1.2 752,041 + DZA65_RS03580 0.44 -0.1 752,041 + DZA65_RS03580 0.44 -0.8 752,042 - DZA65_RS03580 0.44 -1.1 752,059 - DZA65_RS03580 0.45 +1.2 752,061 + DZA65_RS03580 0.46 +0.1 752,061 + DZA65_RS03580 0.46 +0.2 752,075 - DZA65_RS03580 0.47 -1.1 752,158 + DZA65_RS03580 0.54 -0.3 752,159 - DZA65_RS03580 0.54 -0.9 752,159 - DZA65_RS03580 0.54 -0.4 752,159 - DZA65_RS03580 0.54 +1.8 752,159 - DZA65_RS03580 0.54 +0.1 752,159 - DZA65_RS03580 0.54 -1.8 752,159 - DZA65_RS03580 0.54 -0.7 752,160 + DZA65_RS03580 0.54 +0.2 752,160 + DZA65_RS03580 0.54 -0.4 752,160 + DZA65_RS03580 0.54 +0.1 752,160 + DZA65_RS03580 0.54 -1.0 752,160 + DZA65_RS03580 0.54 -0.8 752,160 + DZA65_RS03580 0.54 -0.5 752,161 - DZA65_RS03580 0.54 -0.2 752,161 - DZA65_RS03580 0.54 -0.2 752,169 - DZA65_RS03580 0.55 -1.3 752,183 + DZA65_RS03580 0.56 -1.5 752,184 - DZA65_RS03580 0.56 +1.5 752,189 + DZA65_RS03580 0.56 +0.4 752,189 + DZA65_RS03580 0.56 +0.5 752,190 - DZA65_RS03580 0.56 -1.8 752,190 - DZA65_RS03580 0.56 +0.3 752,190 - DZA65_RS03580 0.56 +0.2 752,213 + DZA65_RS03580 0.58 +1.4 752,213 + DZA65_RS03580 0.58 +0.6 752,214 - DZA65_RS03580 0.58 -0.7 752,214 - DZA65_RS03580 0.58 -1.1 752,259 + DZA65_RS03580 0.62 +1.2 752,260 - DZA65_RS03580 0.62 +0.1 752,293 + DZA65_RS03580 0.65 -2.0 752,293 + DZA65_RS03580 0.65 +0.3 752,293 + DZA65_RS03580 0.65 +0.3 752,294 - DZA65_RS03580 0.65 -0.3 752,301 + DZA65_RS03580 0.65 +0.2 752,314 + DZA65_RS03580 0.67 -2.4 752,314 + DZA65_RS03580 0.67 +1.5 752,314 + DZA65_RS03580 0.67 -3.2 752,314 + DZA65_RS03580 0.67 +0.1 752,314 + DZA65_RS03580 0.67 -2.4 752,356 + DZA65_RS03580 0.70 -0.2 752,357 - DZA65_RS03580 0.70 -1.5 752,384 + DZA65_RS03580 0.72 -0.8 752,385 - DZA65_RS03580 0.72 +0.6 752,396 + DZA65_RS03580 0.73 -0.4 752,396 + DZA65_RS03580 0.73 -0.5 752,397 - DZA65_RS03580 0.73 +0.7 752,450 - DZA65_RS03580 0.78 -1.1 752,450 - DZA65_RS03580 0.78 +0.8 752,458 + DZA65_RS03580 0.78 -1.4 752,459 - DZA65_RS03580 0.78 +2.0 752,488 + DZA65_RS03580 0.81 +0.4 752,488 + DZA65_RS03580 0.81 -0.0 752,492 - DZA65_RS03580 0.81 -0.1 752,492 - DZA65_RS03580 0.81 +0.9 752,494 + DZA65_RS03580 0.81 -2.3
Or see this region's nucleotide sequence