Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03370 and DZA65_RS03375 are separated by 271 nucleotides DZA65_RS03375 and DZA65_RS03380 overlap by 32 nucleotides DZA65_RS03380 and DZA65_RS03385 are separated by 153 nucleotides
DZA65_RS03370: DZA65_RS03370 - type I restriction endonuclease subunit R, at 712,649 to 715,753
_RS03370
DZA65_RS03375: DZA65_RS03375 - ribosomal protein S18-alanine N-acetyltransferase, at 716,025 to 716,468
_RS03375
DZA65_RS03380: DZA65_RS03380 - DNA polymerase III subunit psi, at 716,437 to 716,856
_RS03380
DZA65_RS03385: DZA65_RS03385 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 717,010 to 718,038
_RS03385
Position (kb) 716
717 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 715.106 kb on + strand, within DZA65_RS03370 at 715.146 kb on + strand, within DZA65_RS03370 at 715.146 kb on + strand, within DZA65_RS03370 at 715.146 kb on + strand, within DZA65_RS03370 at 715.146 kb on + strand, within DZA65_RS03370 at 715.147 kb on - strand, within DZA65_RS03370 at 715.147 kb on - strand, within DZA65_RS03370 at 715.147 kb on - strand, within DZA65_RS03370 at 715.168 kb on - strand, within DZA65_RS03370 at 715.182 kb on + strand, within DZA65_RS03370 at 715.182 kb on + strand, within DZA65_RS03370 at 715.182 kb on + strand, within DZA65_RS03370 at 715.183 kb on - strand, within DZA65_RS03370 at 715.183 kb on - strand, within DZA65_RS03370 at 715.221 kb on + strand, within DZA65_RS03370 at 715.221 kb on + strand, within DZA65_RS03370 at 715.221 kb on + strand, within DZA65_RS03370 at 715.221 kb on + strand, within DZA65_RS03370 at 715.221 kb on + strand, within DZA65_RS03370 at 715.221 kb on + strand, within DZA65_RS03370 at 715.221 kb on + strand, within DZA65_RS03370 at 715.222 kb on - strand, within DZA65_RS03370 at 715.222 kb on - strand, within DZA65_RS03370 at 715.222 kb on - strand, within DZA65_RS03370 at 715.222 kb on - strand, within DZA65_RS03370 at 715.222 kb on - strand, within DZA65_RS03370 at 715.279 kb on + strand, within DZA65_RS03370 at 715.298 kb on - strand, within DZA65_RS03370 at 715.298 kb on - strand, within DZA65_RS03370 at 715.303 kb on + strand, within DZA65_RS03370 at 715.303 kb on + strand, within DZA65_RS03370 at 715.303 kb on + strand, within DZA65_RS03370 at 715.303 kb on + strand, within DZA65_RS03370 at 715.303 kb on + strand, within DZA65_RS03370 at 715.304 kb on - strand at 715.304 kb on - strand, within DZA65_RS03370 at 715.324 kb on + strand, within DZA65_RS03370 at 715.324 kb on + strand, within DZA65_RS03370 at 715.325 kb on - strand, within DZA65_RS03370 at 715.372 kb on + strand, within DZA65_RS03370 at 715.373 kb on - strand, within DZA65_RS03370 at 715.386 kb on - strand, within DZA65_RS03370 at 715.487 kb on + strand at 715.488 kb on - strand at 715.529 kb on + strand at 715.530 kb on - strand at 715.530 kb on - strand at 715.603 kb on + strand at 715.624 kb on + strand at 715.624 kb on + strand at 715.624 kb on + strand at 715.624 kb on + strand at 715.624 kb on + strand at 715.625 kb on - strand at 715.631 kb on - strand at 715.683 kb on + strand at 715.683 kb on + strand at 715.683 kb on + strand at 715.684 kb on - strand at 715.684 kb on - strand at 715.703 kb on + strand at 715.703 kb on + strand at 715.704 kb on - strand at 715.704 kb on - strand at 715.704 kb on - strand at 715.727 kb on - strand at 715.736 kb on - strand at 715.756 kb on + strand at 715.757 kb on - strand at 715.768 kb on + strand at 715.792 kb on - strand at 715.815 kb on + strand at 715.861 kb on + strand at 715.861 kb on + strand at 715.861 kb on + strand at 715.861 kb on + strand at 715.862 kb on - strand at 715.862 kb on - strand at 715.862 kb on - strand at 715.862 kb on - strand at 715.862 kb on - strand at 715.862 kb on - strand at 715.862 kb on - strand at 715.866 kb on + strand at 715.866 kb on + strand at 715.866 kb on + strand at 715.866 kb on + strand at 715.866 kb on + strand at 715.867 kb on - strand at 715.867 kb on - strand at 715.867 kb on - strand at 715.867 kb on - strand at 715.867 kb on - strand at 715.879 kb on + strand at 715.880 kb on - strand at 715.985 kb on - strand at 716.013 kb on + strand at 716.013 kb on + strand at 716.013 kb on + strand at 716.013 kb on + strand at 716.014 kb on - strand at 716.014 kb on - strand at 716.014 kb on - strand at 716.048 kb on + strand at 716.048 kb on + strand at 716.100 kb on + strand, within DZA65_RS03375 at 716.101 kb on - strand, within DZA65_RS03375 at 716.101 kb on - strand, within DZA65_RS03375 at 716.101 kb on - strand, within DZA65_RS03375 at 716.125 kb on + strand, within DZA65_RS03375 at 716.125 kb on + strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.179 kb on - strand, within DZA65_RS03375 at 716.179 kb on - strand, within DZA65_RS03375 at 716.181 kb on - strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.289 kb on + strand, within DZA65_RS03375 at 716.290 kb on - strand, within DZA65_RS03375 at 716.290 kb on - strand, within DZA65_RS03375 at 716.290 kb on - strand, within DZA65_RS03375 at 716.292 kb on + strand, within DZA65_RS03375 at 716.293 kb on - strand, within DZA65_RS03375 at 716.309 kb on - strand, within DZA65_RS03375 at 716.350 kb on + strand, within DZA65_RS03375 at 716.351 kb on - strand, within DZA65_RS03375 at 716.406 kb on + strand, within DZA65_RS03375 at 716.406 kb on + strand, within DZA65_RS03375 at 716.406 kb on + strand, within DZA65_RS03375 at 716.407 kb on - strand, within DZA65_RS03375 at 716.407 kb on - strand, within DZA65_RS03375 at 716.896 kb on - strand at 716.896 kb on - strand at 716.896 kb on - strand at 716.936 kb on - strand at 716.936 kb on - strand at 716.941 kb on - strand at 716.941 kb on - strand at 716.973 kb on + strand at 716.973 kb on + strand at 716.973 kb on + strand at 716.973 kb on + strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.991 kb on + strand at 717.021 kb on - strand at 717.041 kb on + strand at 717.042 kb on - strand at 717.042 kb on - strand at 717.042 kb on - strand at 717.042 kb on - strand at 717.140 kb on + strand, within DZA65_RS03385 at 717.140 kb on + strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.154 kb on + strand, within DZA65_RS03385 at 717.154 kb on + strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.437 kb on - strand, within DZA65_RS03385 at 717.437 kb on - strand, within DZA65_RS03385 at 717.462 kb on + strand, within DZA65_RS03385 at 717.462 kb on + strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 715,106 + DZA65_RS03370 0.79 -0.0 715,146 + DZA65_RS03370 0.80 -1.0 715,146 + DZA65_RS03370 0.80 +1.1 715,146 + DZA65_RS03370 0.80 +1.5 715,146 + DZA65_RS03370 0.80 +1.4 715,147 - DZA65_RS03370 0.80 -1.2 715,147 - DZA65_RS03370 0.80 -0.3 715,147 - DZA65_RS03370 0.80 +1.6 715,168 - DZA65_RS03370 0.81 -0.4 715,182 + DZA65_RS03370 0.82 -0.4 715,182 + DZA65_RS03370 0.82 -2.9 715,182 + DZA65_RS03370 0.82 -0.9 715,183 - DZA65_RS03370 0.82 -0.1 715,183 - DZA65_RS03370 0.82 +0.7 715,221 + DZA65_RS03370 0.83 -1.4 715,221 + DZA65_RS03370 0.83 -0.2 715,221 + DZA65_RS03370 0.83 +1.0 715,221 + DZA65_RS03370 0.83 +0.6 715,221 + DZA65_RS03370 0.83 +1.1 715,221 + DZA65_RS03370 0.83 +0.1 715,221 + DZA65_RS03370 0.83 -0.1 715,222 - DZA65_RS03370 0.83 -2.5 715,222 - DZA65_RS03370 0.83 -1.0 715,222 - DZA65_RS03370 0.83 +0.6 715,222 - DZA65_RS03370 0.83 -0.5 715,222 - DZA65_RS03370 0.83 -2.0 715,279 + DZA65_RS03370 0.85 +0.3 715,298 - DZA65_RS03370 0.85 -0.1 715,298 - DZA65_RS03370 0.85 +0.9 715,303 + DZA65_RS03370 0.85 +1.1 715,303 + DZA65_RS03370 0.85 -1.6 715,303 + DZA65_RS03370 0.85 -0.5 715,303 + DZA65_RS03370 0.85 +0.1 715,303 + DZA65_RS03370 0.85 -0.3 715,304 - +0.8 715,304 - DZA65_RS03370 0.86 -0.7 715,324 + DZA65_RS03370 0.86 -0.3 715,324 + DZA65_RS03370 0.86 +0.1 715,325 - DZA65_RS03370 0.86 +1.8 715,372 + DZA65_RS03370 0.88 -0.5 715,373 - DZA65_RS03370 0.88 -1.2 715,386 - DZA65_RS03370 0.88 -0.2 715,487 + +2.0 715,488 - +0.9 715,529 + -1.2 715,530 - +0.5 715,530 - -0.4 715,603 + -0.8 715,624 + +0.3 715,624 + -1.8 715,624 + +0.6 715,624 + +0.8 715,624 + -0.6 715,625 - +0.4 715,631 - -0.5 715,683 + -0.0 715,683 + -2.4 715,683 + +0.5 715,684 - -1.5 715,684 - -1.8 715,703 + -2.4 715,703 + -0.4 715,704 - +0.1 715,704 - +0.2 715,704 - -1.5 715,727 - +0.4 715,736 - +0.8 715,756 + -1.1 715,757 - +1.2 715,768 + +1.6 715,792 - +0.8 715,815 + -2.0 715,861 + -0.2 715,861 + -1.4 715,861 + +0.4 715,861 + -1.1 715,862 - +0.5 715,862 - +1.7 715,862 - -1.0 715,862 - +0.4 715,862 - +1.1 715,862 - -0.2 715,862 - -0.6 715,866 + +0.6 715,866 + +1.0 715,866 + -1.0 715,866 + -2.0 715,866 + +0.7 715,867 - -1.2 715,867 - +0.2 715,867 - +0.4 715,867 - +0.0 715,867 - +0.6 715,879 + -0.8 715,880 - -0.1 715,985 - +0.8 716,013 + -0.2 716,013 + -0.2 716,013 + +1.5 716,013 + +0.5 716,014 - -1.9 716,014 - -1.5 716,014 - -0.2 716,048 + -0.5 716,048 + -2.4 716,100 + DZA65_RS03375 0.17 +1.6 716,101 - DZA65_RS03375 0.17 +0.2 716,101 - DZA65_RS03375 0.17 -0.4 716,101 - DZA65_RS03375 0.17 +0.8 716,125 + DZA65_RS03375 0.23 +1.1 716,125 + DZA65_RS03375 0.23 +1.5 716,143 - DZA65_RS03375 0.27 -0.1 716,143 - DZA65_RS03375 0.27 +1.6 716,143 - DZA65_RS03375 0.27 +1.0 716,143 - DZA65_RS03375 0.27 +0.2 716,143 - DZA65_RS03375 0.27 -0.5 716,178 + DZA65_RS03375 0.34 -1.3 716,178 + DZA65_RS03375 0.34 -0.2 716,178 + DZA65_RS03375 0.34 -0.8 716,178 + DZA65_RS03375 0.34 +0.6 716,179 - DZA65_RS03375 0.35 -0.6 716,179 - DZA65_RS03375 0.35 +0.8 716,181 - DZA65_RS03375 0.35 -1.8 716,276 + DZA65_RS03375 0.57 -1.2 716,276 + DZA65_RS03375 0.57 +0.0 716,276 + DZA65_RS03375 0.57 +0.1 716,276 + DZA65_RS03375 0.57 +0.9 716,276 + DZA65_RS03375 0.57 -0.3 716,276 + DZA65_RS03375 0.57 +0.1 716,277 - DZA65_RS03375 0.57 +1.0 716,277 - DZA65_RS03375 0.57 -1.5 716,277 - DZA65_RS03375 0.57 +0.0 716,277 - DZA65_RS03375 0.57 +0.5 716,277 - DZA65_RS03375 0.57 -1.5 716,277 - DZA65_RS03375 0.57 -1.1 716,289 + DZA65_RS03375 0.59 +1.2 716,290 - DZA65_RS03375 0.60 +0.3 716,290 - DZA65_RS03375 0.60 -0.2 716,290 - DZA65_RS03375 0.60 -2.5 716,292 + DZA65_RS03375 0.60 -1.2 716,293 - DZA65_RS03375 0.60 +0.8 716,309 - DZA65_RS03375 0.64 +1.1 716,350 + DZA65_RS03375 0.73 +0.4 716,351 - DZA65_RS03375 0.73 -1.0 716,406 + DZA65_RS03375 0.86 -0.2 716,406 + DZA65_RS03375 0.86 +1.0 716,406 + DZA65_RS03375 0.86 +0.6 716,407 - DZA65_RS03375 0.86 -1.0 716,407 - DZA65_RS03375 0.86 +0.8 716,896 - -1.4 716,896 - +0.3 716,896 - +0.5 716,936 - +0.3 716,936 - -0.4 716,941 - -1.9 716,941 - +0.2 716,973 + -0.2 716,973 + -0.2 716,973 + +0.8 716,973 + -1.2 716,974 - +0.4 716,974 - +0.5 716,974 - +0.1 716,974 - +0.2 716,974 - -0.4 716,974 - -0.2 716,974 - -0.5 716,974 - -0.4 716,974 - -1.0 716,975 + +0.1 716,975 + -1.5 716,975 + +0.5 716,975 + -0.9 716,975 + +0.5 716,975 + -1.2 716,975 + -1.4 716,975 + +0.8 716,976 - -0.4 716,976 - -1.3 716,976 - +0.6 716,976 - -0.2 716,976 - +0.2 716,976 - -0.4 716,976 - -0.9 716,976 - -1.5 716,976 - -1.2 716,991 + -0.4 717,021 - +1.5 717,041 + +2.0 717,042 - -0.5 717,042 - -1.1 717,042 - +0.6 717,042 - +1.0 717,140 + DZA65_RS03385 0.13 -0.8 717,140 + DZA65_RS03385 0.13 +1.2 717,141 - DZA65_RS03385 0.13 -0.3 717,141 - DZA65_RS03385 0.13 +0.1 717,141 - DZA65_RS03385 0.13 -0.9 717,141 - DZA65_RS03385 0.13 +0.2 717,141 - DZA65_RS03385 0.13 -2.0 717,141 - DZA65_RS03385 0.13 +3.0 717,154 + DZA65_RS03385 0.14 -0.9 717,154 + DZA65_RS03385 0.14 +1.6 717,155 - DZA65_RS03385 0.14 +0.5 717,155 - DZA65_RS03385 0.14 -1.2 717,155 - DZA65_RS03385 0.14 +2.0 717,155 - DZA65_RS03385 0.14 -0.2 717,155 - DZA65_RS03385 0.14 -1.5 717,155 - DZA65_RS03385 0.14 -0.7 717,155 - DZA65_RS03385 0.14 +2.0 717,155 - DZA65_RS03385 0.14 +0.7 717,253 + DZA65_RS03385 0.24 -0.9 717,253 + DZA65_RS03385 0.24 -0.4 717,253 + DZA65_RS03385 0.24 -1.8 717,253 + DZA65_RS03385 0.24 -1.0 717,253 + DZA65_RS03385 0.24 +0.5 717,253 + DZA65_RS03385 0.24 -0.2 717,254 - DZA65_RS03385 0.24 +2.4 717,254 - DZA65_RS03385 0.24 +2.4 717,254 - DZA65_RS03385 0.24 -0.9 717,254 - DZA65_RS03385 0.24 +1.0 717,254 - DZA65_RS03385 0.24 -0.9 717,254 - DZA65_RS03385 0.24 +0.4 717,405 + DZA65_RS03385 0.38 +0.8 717,405 + DZA65_RS03385 0.38 -0.9 717,405 + DZA65_RS03385 0.38 -0.2 717,405 + DZA65_RS03385 0.38 +0.5 717,405 + DZA65_RS03385 0.38 -0.8 717,405 + DZA65_RS03385 0.38 +1.8 717,405 + DZA65_RS03385 0.38 -0.2 717,405 + DZA65_RS03385 0.38 -1.8 717,406 - DZA65_RS03385 0.38 -0.6 717,406 - DZA65_RS03385 0.38 -0.6 717,406 - DZA65_RS03385 0.38 -1.2 717,406 - DZA65_RS03385 0.38 -0.8 717,406 - DZA65_RS03385 0.38 -1.4 717,437 - DZA65_RS03385 0.41 +0.0 717,437 - DZA65_RS03385 0.41 -0.8 717,462 + DZA65_RS03385 0.44 +0.4 717,462 + DZA65_RS03385 0.44 +0.5 717,463 - DZA65_RS03385 0.44 -1.7 717,463 - DZA65_RS03385 0.44 +0.8 717,463 - DZA65_RS03385 0.44 -0.6 717,463 - DZA65_RS03385 0.44 -0.3
Or see this region's nucleotide sequence