Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03260 and DZA65_RS03265 are separated by 108 nucleotides DZA65_RS03265 and DZA65_RS03270 are separated by 12 nucleotides
DZA65_RS03260: DZA65_RS03260 - lipoprotein NlpI, at 691,853 to 692,737
_RS03260
DZA65_RS03265: DZA65_RS03265 - protein YrbN, at 692,846 to 692,905
_RS03265
DZA65_RS03270: DZA65_RS03270 - DEAD/DEAH family ATP-dependent RNA helicase, at 692,918 to 694,804
_RS03270
Position (kb) 692
693 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 691.877 kb on + strand at 691.877 kb on + strand at 691.878 kb on - strand at 691.878 kb on - strand at 691.878 kb on - strand at 691.894 kb on + strand at 691.894 kb on + strand at 691.895 kb on - strand at 691.895 kb on - strand at 692.021 kb on - strand at 692.046 kb on + strand, within DZA65_RS03260 at 692.046 kb on + strand, within DZA65_RS03260 at 692.047 kb on - strand, within DZA65_RS03260 at 692.047 kb on - strand, within DZA65_RS03260 at 692.048 kb on + strand, within DZA65_RS03260 at 692.049 kb on - strand, within DZA65_RS03260 at 692.049 kb on - strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.135 kb on - strand, within DZA65_RS03260 at 692.153 kb on + strand, within DZA65_RS03260 at 692.165 kb on + strand, within DZA65_RS03260 at 692.244 kb on - strand, within DZA65_RS03260 at 692.364 kb on - strand, within DZA65_RS03260 at 692.421 kb on - strand at 692.506 kb on + strand, within DZA65_RS03260 at 692.506 kb on + strand, within DZA65_RS03260 at 692.508 kb on + strand, within DZA65_RS03260 at 692.509 kb on - strand, within DZA65_RS03260 at 692.509 kb on - strand, within DZA65_RS03260 at 692.521 kb on + strand, within DZA65_RS03260 at 692.567 kb on + strand, within DZA65_RS03260 at 692.567 kb on + strand, within DZA65_RS03260 at 692.567 kb on + strand, within DZA65_RS03260 at 692.567 kb on + strand, within DZA65_RS03260 at 692.568 kb on - strand, within DZA65_RS03260 at 692.582 kb on + strand, within DZA65_RS03260 at 692.582 kb on + strand at 692.583 kb on - strand, within DZA65_RS03260 at 692.586 kb on + strand, within DZA65_RS03260 at 692.587 kb on - strand, within DZA65_RS03260 at 692.587 kb on - strand, within DZA65_RS03260 at 692.715 kb on + strand at 692.715 kb on + strand at 692.735 kb on + strand at 692.735 kb on + strand at 692.735 kb on + strand at 692.735 kb on + strand at 692.735 kb on + strand at 692.735 kb on + strand at 692.786 kb on + strand at 692.790 kb on - strand at 692.862 kb on - strand, within DZA65_RS03265 at 692.881 kb on + strand, within DZA65_RS03265 at 692.881 kb on + strand, within DZA65_RS03265 at 693.856 kb on + strand, within DZA65_RS03270
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 691,877 + -2.0 691,877 + -2.2 691,878 - -1.7 691,878 - -1.7 691,878 - -1.5 691,894 + -2.9 691,894 + -1.3 691,895 - -3.9 691,895 - -4.2 692,021 - -1.5 692,046 + DZA65_RS03260 0.22 +1.3 692,046 + DZA65_RS03260 0.22 -2.5 692,047 - DZA65_RS03260 0.22 -2.5 692,047 - DZA65_RS03260 0.22 -1.7 692,048 + DZA65_RS03260 0.22 -2.7 692,049 - DZA65_RS03260 0.22 -4.7 692,049 - DZA65_RS03260 0.22 +0.7 692,066 + DZA65_RS03260 0.24 -0.4 692,066 + DZA65_RS03260 0.24 -2.0 692,066 + DZA65_RS03260 0.24 -2.2 692,066 + DZA65_RS03260 0.24 -1.5 692,066 + DZA65_RS03260 0.24 -1.7 692,135 - DZA65_RS03260 0.32 -2.5 692,153 + DZA65_RS03260 0.34 -3.0 692,165 + DZA65_RS03260 0.35 -2.5 692,244 - DZA65_RS03260 0.44 -3.1 692,364 - DZA65_RS03260 0.58 -2.7 692,421 - +2.7 692,506 + DZA65_RS03260 0.74 -0.7 692,506 + DZA65_RS03260 0.74 -2.0 692,508 + DZA65_RS03260 0.74 -5.1 692,509 - DZA65_RS03260 0.74 +1.0 692,509 - DZA65_RS03260 0.74 +0.8 692,521 + DZA65_RS03260 0.75 -0.2 692,567 + DZA65_RS03260 0.81 -2.2 692,567 + DZA65_RS03260 0.81 -2.7 692,567 + DZA65_RS03260 0.81 -0.3 692,567 + DZA65_RS03260 0.81 -1.2 692,568 - DZA65_RS03260 0.81 +0.8 692,582 + DZA65_RS03260 0.82 -2.0 692,582 + -0.2 692,583 - DZA65_RS03260 0.82 -0.2 692,586 + DZA65_RS03260 0.83 -2.7 692,587 - DZA65_RS03260 0.83 -1.5 692,587 - DZA65_RS03260 0.83 -0.2 692,715 + +0.6 692,715 + +0.6 692,735 + -0.2 692,735 + -0.2 692,735 + +1.5 692,735 + +0.3 692,735 + +0.5 692,735 + -1.0 692,786 + +2.2 692,790 - -2.2 692,862 - DZA65_RS03265 0.27 -0.2 692,881 + DZA65_RS03265 0.58 -0.6 692,881 + DZA65_RS03265 0.58 -0.9 693,856 + DZA65_RS03270 0.50 +0.3
Or see this region's nucleotide sequence