Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03245 and DZA65_RS03250 are separated by 108 nucleotides DZA65_RS03250 and DZA65_RS03255 are separated by 250 nucleotides DZA65_RS03255 and DZA65_RS03260 are separated by 127 nucleotides
DZA65_RS03245: DZA65_RS03245 - tRNA pseudouridine(55) synthase TruB, at 688,020 to 688,976
_RS03245
DZA65_RS03250: DZA65_RS03250 - 30S ribosomal protein S15, at 689,085 to 689,354
_RS03250
DZA65_RS03255: DZA65_RS03255 - polyribonucleotide nucleotidyltransferase, at 689,605 to 691,725
_RS03255
DZA65_RS03260: DZA65_RS03260 - lipoprotein NlpI, at 691,853 to 692,737
_RS03260
Position (kb) 689
690
691
692 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 688.614 kb on + strand, within DZA65_RS03245 at 688.615 kb on - strand, within DZA65_RS03245 at 688.615 kb on - strand, within DZA65_RS03245 at 688.641 kb on + strand, within DZA65_RS03245 at 688.641 kb on + strand, within DZA65_RS03245 at 688.641 kb on + strand, within DZA65_RS03245 at 688.641 kb on + strand, within DZA65_RS03245 at 688.642 kb on - strand, within DZA65_RS03245 at 688.782 kb on - strand, within DZA65_RS03245 at 688.816 kb on + strand, within DZA65_RS03245 at 688.816 kb on + strand, within DZA65_RS03245 at 688.816 kb on + strand, within DZA65_RS03245 at 688.816 kb on + strand, within DZA65_RS03245 at 688.817 kb on - strand, within DZA65_RS03245 at 688.817 kb on - strand, within DZA65_RS03245 at 688.841 kb on + strand, within DZA65_RS03245 at 688.842 kb on - strand, within DZA65_RS03245 at 688.945 kb on + strand at 688.946 kb on - strand at 689.059 kb on + strand at 689.429 kb on + strand at 689.429 kb on + strand at 689.429 kb on + strand at 689.429 kb on + strand at 689.429 kb on + strand at 689.429 kb on + strand at 689.440 kb on + strand at 689.440 kb on + strand at 689.440 kb on + strand at 689.440 kb on + strand at 689.444 kb on + strand at 689.444 kb on + strand at 689.444 kb on + strand at 689.444 kb on + strand at 689.444 kb on + strand at 689.454 kb on + strand at 689.457 kb on + strand at 689.488 kb on + strand at 689.531 kb on + strand at 689.531 kb on + strand at 689.531 kb on + strand at 689.531 kb on + strand at 689.532 kb on - strand at 689.550 kb on + strand at 689.564 kb on + strand at 689.573 kb on + strand at 689.573 kb on + strand at 689.602 kb on - strand at 689.647 kb on - strand at 689.791 kb on + strand at 690.921 kb on + strand, within DZA65_RS03255 at 690.922 kb on - strand, within DZA65_RS03255 at 691.028 kb on - strand, within DZA65_RS03255 at 691.228 kb on - strand, within DZA65_RS03255 at 691.670 kb on + strand at 691.671 kb on - strand at 691.723 kb on + strand at 691.724 kb on - strand at 691.724 kb on - strand at 691.724 kb on - strand at 691.724 kb on - strand at 691.724 kb on - strand at 691.724 kb on - strand at 691.726 kb on + strand at 691.752 kb on + strand at 691.753 kb on - strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.775 kb on - strand at 691.775 kb on - strand at 691.775 kb on - strand at 691.775 kb on - strand at 691.777 kb on + strand at 691.777 kb on + strand at 691.777 kb on + strand at 691.777 kb on + strand at 691.777 kb on + strand at 691.778 kb on - strand at 691.778 kb on - strand at 691.779 kb on + strand at 691.780 kb on - strand at 691.780 kb on - strand at 691.780 kb on - strand at 691.796 kb on + strand at 691.797 kb on - strand at 691.877 kb on + strand at 691.877 kb on + strand at 691.878 kb on - strand at 691.878 kb on - strand at 691.878 kb on - strand at 691.894 kb on + strand at 691.894 kb on + strand at 691.895 kb on - strand at 691.895 kb on - strand at 692.021 kb on - strand at 692.046 kb on + strand, within DZA65_RS03260 at 692.046 kb on + strand, within DZA65_RS03260 at 692.047 kb on - strand, within DZA65_RS03260 at 692.047 kb on - strand, within DZA65_RS03260 at 692.048 kb on + strand, within DZA65_RS03260 at 692.049 kb on - strand, within DZA65_RS03260 at 692.049 kb on - strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.135 kb on - strand, within DZA65_RS03260 at 692.153 kb on + strand, within DZA65_RS03260 at 692.165 kb on + strand, within DZA65_RS03260 at 692.244 kb on - strand, within DZA65_RS03260 at 692.364 kb on - strand, within DZA65_RS03260 at 692.421 kb on - strand at 692.506 kb on + strand, within DZA65_RS03260 at 692.506 kb on + strand, within DZA65_RS03260 at 692.508 kb on + strand, within DZA65_RS03260 at 692.509 kb on - strand, within DZA65_RS03260 at 692.509 kb on - strand, within DZA65_RS03260 at 692.521 kb on + strand, within DZA65_RS03260 at 692.567 kb on + strand, within DZA65_RS03260 at 692.567 kb on + strand, within DZA65_RS03260 at 692.567 kb on + strand, within DZA65_RS03260 at 692.567 kb on + strand, within DZA65_RS03260 at 692.568 kb on - strand, within DZA65_RS03260 at 692.582 kb on + strand, within DZA65_RS03260 at 692.582 kb on + strand at 692.583 kb on - strand, within DZA65_RS03260 at 692.586 kb on + strand, within DZA65_RS03260 at 692.587 kb on - strand, within DZA65_RS03260 at 692.587 kb on - strand, within DZA65_RS03260 at 692.715 kb on + strand at 692.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 688,614 + DZA65_RS03245 0.62 +0.2 688,615 - DZA65_RS03245 0.62 +0.5 688,615 - DZA65_RS03245 0.62 -0.5 688,641 + DZA65_RS03245 0.65 -1.4 688,641 + DZA65_RS03245 0.65 +0.2 688,641 + DZA65_RS03245 0.65 -1.1 688,641 + DZA65_RS03245 0.65 +3.9 688,642 - DZA65_RS03245 0.65 +1.3 688,782 - DZA65_RS03245 0.80 -0.4 688,816 + DZA65_RS03245 0.83 +0.6 688,816 + DZA65_RS03245 0.83 -1.1 688,816 + DZA65_RS03245 0.83 -0.1 688,816 + DZA65_RS03245 0.83 -0.7 688,817 - DZA65_RS03245 0.83 +0.4 688,817 - DZA65_RS03245 0.83 +0.5 688,841 + DZA65_RS03245 0.86 -0.5 688,842 - DZA65_RS03245 0.86 +0.9 688,945 + +0.4 688,946 - +1.3 689,059 + +0.1 689,429 + +0.7 689,429 + -0.7 689,429 + -1.9 689,429 + +0.5 689,429 + -1.3 689,429 + +0.8 689,440 + -0.4 689,440 + +0.9 689,440 + -1.0 689,440 + -0.8 689,444 + -1.0 689,444 + +0.6 689,444 + +0.6 689,444 + -0.1 689,444 + -0.7 689,454 + -0.6 689,457 + -3.1 689,488 + +0.2 689,531 + -1.2 689,531 + +0.7 689,531 + -1.3 689,531 + -4.2 689,532 - -0.1 689,550 + +1.1 689,564 + -2.8 689,573 + -0.1 689,573 + +0.3 689,602 - +0.8 689,647 - -1.2 689,791 + -2.0 690,921 + DZA65_RS03255 0.62 -0.7 690,922 - DZA65_RS03255 0.62 -1.5 691,028 - DZA65_RS03255 0.67 -0.4 691,228 - DZA65_RS03255 0.77 -0.4 691,670 + -0.2 691,671 - -0.2 691,723 + -0.2 691,724 - -1.2 691,724 - -0.9 691,724 - -3.7 691,724 - -3.2 691,724 - -1.5 691,724 - -2.2 691,726 + +0.9 691,752 + -0.7 691,753 - -1.5 691,774 + -2.5 691,774 + -0.1 691,774 + +0.4 691,774 + +0.4 691,774 + -0.6 691,774 + -0.3 691,774 + -1.0 691,774 + -2.9 691,774 + +0.2 691,775 - +0.2 691,775 - -1.9 691,775 - -2.0 691,775 - -2.0 691,777 + -1.0 691,777 + -1.2 691,777 + -0.9 691,777 + -1.3 691,777 + +0.6 691,778 - -1.5 691,778 - -2.7 691,779 + -2.5 691,780 - -2.0 691,780 - -1.2 691,780 - -2.3 691,796 + +1.2 691,797 - -1.2 691,877 + -2.0 691,877 + -2.2 691,878 - -1.7 691,878 - -1.7 691,878 - -1.5 691,894 + -2.9 691,894 + -1.3 691,895 - -3.9 691,895 - -4.2 692,021 - -1.5 692,046 + DZA65_RS03260 0.22 +1.3 692,046 + DZA65_RS03260 0.22 -2.5 692,047 - DZA65_RS03260 0.22 -2.5 692,047 - DZA65_RS03260 0.22 -1.7 692,048 + DZA65_RS03260 0.22 -2.7 692,049 - DZA65_RS03260 0.22 -4.7 692,049 - DZA65_RS03260 0.22 +0.7 692,066 + DZA65_RS03260 0.24 -0.4 692,066 + DZA65_RS03260 0.24 -2.0 692,066 + DZA65_RS03260 0.24 -2.2 692,066 + DZA65_RS03260 0.24 -1.5 692,066 + DZA65_RS03260 0.24 -1.7 692,135 - DZA65_RS03260 0.32 -2.5 692,153 + DZA65_RS03260 0.34 -3.0 692,165 + DZA65_RS03260 0.35 -2.5 692,244 - DZA65_RS03260 0.44 -3.1 692,364 - DZA65_RS03260 0.58 -2.7 692,421 - +2.7 692,506 + DZA65_RS03260 0.74 -0.7 692,506 + DZA65_RS03260 0.74 -2.0 692,508 + DZA65_RS03260 0.74 -5.1 692,509 - DZA65_RS03260 0.74 +1.0 692,509 - DZA65_RS03260 0.74 +0.8 692,521 + DZA65_RS03260 0.75 -0.2 692,567 + DZA65_RS03260 0.81 -2.2 692,567 + DZA65_RS03260 0.81 -2.7 692,567 + DZA65_RS03260 0.81 -0.3 692,567 + DZA65_RS03260 0.81 -1.2 692,568 - DZA65_RS03260 0.81 +0.8 692,582 + DZA65_RS03260 0.82 -2.0 692,582 + -0.2 692,583 - DZA65_RS03260 0.82 -0.2 692,586 + DZA65_RS03260 0.83 -2.7 692,587 - DZA65_RS03260 0.83 -1.5 692,587 - DZA65_RS03260 0.83 -0.2 692,715 + +0.6 692,715 + +0.6
Or see this region's nucleotide sequence