Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02730 and DZA65_RS02735 overlap by 8 nucleotides DZA65_RS02735 and DZA65_RS02740 are separated by 9 nucleotides
DZA65_RS02730: DZA65_RS02730 - hypothetical protein, at 587,466 to 588,848
_RS02730
DZA65_RS02735: DZA65_RS02735 - glycosyltransferase, at 588,841 to 589,830
_RS02735
DZA65_RS02740: DZA65_RS02740 - glycosyltransferase family 4 protein, at 589,840 to 591,051
_RS02740
Position (kb) 588
589
590 Strain fitness (log2 ratio) -2
-1
0
1
2 at 587.847 kb on + strand, within DZA65_RS02730 at 587.847 kb on + strand, within DZA65_RS02730 at 587.847 kb on + strand, within DZA65_RS02730 at 587.847 kb on + strand, within DZA65_RS02730 at 587.871 kb on + strand, within DZA65_RS02730 at 588.057 kb on - strand, within DZA65_RS02730 at 588.098 kb on + strand, within DZA65_RS02730 at 588.098 kb on + strand, within DZA65_RS02730 at 588.098 kb on + strand, within DZA65_RS02730 at 588.123 kb on - strand, within DZA65_RS02730 at 588.171 kb on + strand, within DZA65_RS02730 at 588.171 kb on + strand, within DZA65_RS02730 at 588.171 kb on + strand, within DZA65_RS02730 at 588.171 kb on + strand, within DZA65_RS02730 at 588.172 kb on - strand at 588.193 kb on + strand, within DZA65_RS02730 at 588.243 kb on - strand at 588.273 kb on + strand, within DZA65_RS02730 at 588.291 kb on - strand, within DZA65_RS02730 at 588.340 kb on - strand, within DZA65_RS02730 at 588.340 kb on - strand, within DZA65_RS02730 at 588.357 kb on + strand, within DZA65_RS02730 at 588.358 kb on - strand, within DZA65_RS02730 at 588.358 kb on - strand, within DZA65_RS02730 at 588.358 kb on - strand, within DZA65_RS02730 at 588.398 kb on - strand, within DZA65_RS02730 at 588.446 kb on - strand, within DZA65_RS02730 at 588.513 kb on + strand, within DZA65_RS02730 at 588.523 kb on + strand, within DZA65_RS02730 at 588.752 kb on + strand at 588.781 kb on + strand at 588.874 kb on - strand at 588.971 kb on + strand, within DZA65_RS02735 at 588.971 kb on + strand, within DZA65_RS02735 at 588.971 kb on + strand, within DZA65_RS02735 at 588.971 kb on + strand, within DZA65_RS02735 at 588.971 kb on + strand, within DZA65_RS02735 at 588.972 kb on - strand, within DZA65_RS02735 at 588.972 kb on - strand, within DZA65_RS02735 at 589.075 kb on + strand, within DZA65_RS02735 at 589.075 kb on + strand, within DZA65_RS02735 at 589.076 kb on - strand, within DZA65_RS02735 at 589.076 kb on - strand, within DZA65_RS02735 at 589.076 kb on - strand, within DZA65_RS02735 at 589.076 kb on - strand, within DZA65_RS02735 at 589.096 kb on + strand, within DZA65_RS02735 at 589.096 kb on + strand, within DZA65_RS02735 at 589.097 kb on - strand, within DZA65_RS02735 at 589.107 kb on - strand, within DZA65_RS02735 at 589.140 kb on + strand, within DZA65_RS02735 at 589.225 kb on + strand, within DZA65_RS02735 at 589.225 kb on + strand, within DZA65_RS02735 at 589.225 kb on + strand, within DZA65_RS02735 at 589.225 kb on + strand, within DZA65_RS02735 at 589.225 kb on + strand, within DZA65_RS02735 at 589.226 kb on - strand, within DZA65_RS02735 at 589.233 kb on + strand at 589.234 kb on - strand, within DZA65_RS02735 at 589.234 kb on - strand, within DZA65_RS02735 at 589.251 kb on + strand, within DZA65_RS02735 at 589.252 kb on - strand, within DZA65_RS02735 at 589.252 kb on - strand, within DZA65_RS02735 at 589.262 kb on + strand, within DZA65_RS02735 at 589.263 kb on - strand, within DZA65_RS02735 at 589.263 kb on - strand at 589.264 kb on + strand, within DZA65_RS02735 at 589.304 kb on + strand, within DZA65_RS02735 at 589.304 kb on + strand, within DZA65_RS02735 at 589.305 kb on - strand, within DZA65_RS02735 at 589.305 kb on - strand, within DZA65_RS02735 at 589.305 kb on - strand, within DZA65_RS02735 at 589.305 kb on - strand, within DZA65_RS02735 at 589.306 kb on + strand, within DZA65_RS02735 at 589.331 kb on + strand, within DZA65_RS02735 at 589.337 kb on - strand, within DZA65_RS02735 at 589.407 kb on + strand, within DZA65_RS02735 at 589.408 kb on - strand, within DZA65_RS02735 at 589.412 kb on + strand, within DZA65_RS02735 at 589.427 kb on + strand, within DZA65_RS02735 at 589.427 kb on + strand, within DZA65_RS02735 at 589.428 kb on - strand, within DZA65_RS02735 at 589.428 kb on - strand, within DZA65_RS02735 at 589.433 kb on - strand, within DZA65_RS02735 at 589.433 kb on - strand, within DZA65_RS02735 at 589.443 kb on + strand, within DZA65_RS02735 at 589.465 kb on + strand, within DZA65_RS02735 at 589.467 kb on + strand, within DZA65_RS02735 at 589.468 kb on - strand, within DZA65_RS02735 at 589.468 kb on - strand, within DZA65_RS02735 at 589.547 kb on - strand, within DZA65_RS02735 at 589.573 kb on - strand, within DZA65_RS02735 at 589.616 kb on + strand, within DZA65_RS02735 at 589.622 kb on + strand, within DZA65_RS02735 at 589.622 kb on + strand, within DZA65_RS02735 at 589.623 kb on - strand, within DZA65_RS02735 at 589.645 kb on - strand, within DZA65_RS02735 at 589.696 kb on - strand, within DZA65_RS02735 at 589.745 kb on + strand at 589.746 kb on - strand at 589.819 kb on - strand at 589.829 kb on - strand at 589.829 kb on - strand at 590.031 kb on + strand, within DZA65_RS02740 at 590.031 kb on + strand, within DZA65_RS02740 at 590.071 kb on - strand, within DZA65_RS02740 at 590.071 kb on - strand, within DZA65_RS02740 at 590.085 kb on + strand, within DZA65_RS02740 at 590.086 kb on - strand, within DZA65_RS02740 at 590.088 kb on + strand, within DZA65_RS02740 at 590.142 kb on + strand, within DZA65_RS02740 at 590.142 kb on + strand, within DZA65_RS02740 at 590.142 kb on + strand, within DZA65_RS02740 at 590.143 kb on - strand, within DZA65_RS02740 at 590.143 kb on - strand at 590.143 kb on - strand, within DZA65_RS02740 at 590.143 kb on - strand, within DZA65_RS02740 at 590.146 kb on + strand, within DZA65_RS02740 at 590.147 kb on - strand, within DZA65_RS02740 at 590.196 kb on + strand, within DZA65_RS02740 at 590.196 kb on + strand, within DZA65_RS02740 at 590.197 kb on - strand, within DZA65_RS02740 at 590.197 kb on - strand, within DZA65_RS02740 at 590.221 kb on + strand, within DZA65_RS02740 at 590.221 kb on + strand, within DZA65_RS02740 at 590.222 kb on - strand, within DZA65_RS02740 at 590.242 kb on + strand, within DZA65_RS02740 at 590.242 kb on + strand, within DZA65_RS02740 at 590.242 kb on + strand, within DZA65_RS02740 at 590.242 kb on + strand, within DZA65_RS02740 at 590.242 kb on + strand, within DZA65_RS02740 at 590.243 kb on - strand, within DZA65_RS02740 at 590.295 kb on - strand, within DZA65_RS02740 at 590.298 kb on + strand, within DZA65_RS02740 at 590.298 kb on + strand, within DZA65_RS02740 at 590.298 kb on + strand, within DZA65_RS02740 at 590.299 kb on - strand, within DZA65_RS02740 at 590.299 kb on - strand, within DZA65_RS02740 at 590.299 kb on - strand, within DZA65_RS02740 at 590.307 kb on + strand, within DZA65_RS02740 at 590.308 kb on - strand, within DZA65_RS02740 at 590.311 kb on + strand, within DZA65_RS02740 at 590.358 kb on - strand, within DZA65_RS02740 at 590.377 kb on - strand, within DZA65_RS02740 at 590.377 kb on - strand, within DZA65_RS02740 at 590.466 kb on + strand, within DZA65_RS02740 at 590.466 kb on + strand, within DZA65_RS02740 at 590.467 kb on - strand, within DZA65_RS02740 at 590.490 kb on + strand, within DZA65_RS02740 at 590.530 kb on + strand, within DZA65_RS02740 at 590.530 kb on + strand, within DZA65_RS02740 at 590.531 kb on - strand, within DZA65_RS02740 at 590.531 kb on - strand, within DZA65_RS02740 at 590.541 kb on + strand, within DZA65_RS02740 at 590.542 kb on - strand, within DZA65_RS02740 at 590.607 kb on + strand, within DZA65_RS02740 at 590.608 kb on - strand, within DZA65_RS02740 at 590.644 kb on + strand, within DZA65_RS02740 at 590.644 kb on + strand, within DZA65_RS02740 at 590.644 kb on + strand, within DZA65_RS02740 at 590.645 kb on - strand, within DZA65_RS02740 at 590.645 kb on - strand, within DZA65_RS02740 at 590.645 kb on - strand, within DZA65_RS02740 at 590.645 kb on - strand, within DZA65_RS02740 at 590.724 kb on + strand, within DZA65_RS02740 at 590.725 kb on - strand, within DZA65_RS02740 at 590.758 kb on + strand, within DZA65_RS02740 at 590.758 kb on + strand, within DZA65_RS02740 at 590.758 kb on + strand, within DZA65_RS02740 at 590.826 kb on + strand, within DZA65_RS02740 at 590.826 kb on + strand, within DZA65_RS02740 at 590.827 kb on - strand, within DZA65_RS02740
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 587,847 + DZA65_RS02730 0.28 +0.9 587,847 + DZA65_RS02730 0.28 -0.5 587,847 + DZA65_RS02730 0.28 -0.8 587,847 + DZA65_RS02730 0.28 -0.1 587,871 + DZA65_RS02730 0.29 -0.5 588,057 - DZA65_RS02730 0.43 -0.0 588,098 + DZA65_RS02730 0.46 -2.1 588,098 + DZA65_RS02730 0.46 -2.1 588,098 + DZA65_RS02730 0.46 -0.7 588,123 - DZA65_RS02730 0.48 -1.7 588,171 + DZA65_RS02730 0.51 +0.6 588,171 + DZA65_RS02730 0.51 +1.1 588,171 + DZA65_RS02730 0.51 +1.7 588,171 + DZA65_RS02730 0.51 +1.2 588,172 - -0.7 588,193 + DZA65_RS02730 0.53 +0.3 588,243 - +0.9 588,273 + DZA65_RS02730 0.58 -1.9 588,291 - DZA65_RS02730 0.60 +0.7 588,340 - DZA65_RS02730 0.63 +0.2 588,340 - DZA65_RS02730 0.63 -0.7 588,357 + DZA65_RS02730 0.64 +0.1 588,358 - DZA65_RS02730 0.64 +1.4 588,358 - DZA65_RS02730 0.64 +0.9 588,358 - DZA65_RS02730 0.64 -1.7 588,398 - DZA65_RS02730 0.67 -0.7 588,446 - DZA65_RS02730 0.71 -2.1 588,513 + DZA65_RS02730 0.76 +0.3 588,523 + DZA65_RS02730 0.76 -1.1 588,752 + -1.3 588,781 + -1.9 588,874 - -0.3 588,971 + DZA65_RS02735 0.13 -0.0 588,971 + DZA65_RS02735 0.13 +0.2 588,971 + DZA65_RS02735 0.13 +1.3 588,971 + DZA65_RS02735 0.13 -0.1 588,971 + DZA65_RS02735 0.13 +1.2 588,972 - DZA65_RS02735 0.13 -0.1 588,972 - DZA65_RS02735 0.13 +1.1 589,075 + DZA65_RS02735 0.24 -2.6 589,075 + DZA65_RS02735 0.24 -0.3 589,076 - DZA65_RS02735 0.24 -0.8 589,076 - DZA65_RS02735 0.24 +1.4 589,076 - DZA65_RS02735 0.24 +1.0 589,076 - DZA65_RS02735 0.24 -1.5 589,096 + DZA65_RS02735 0.26 -1.3 589,096 + DZA65_RS02735 0.26 -0.6 589,097 - DZA65_RS02735 0.26 +1.2 589,107 - DZA65_RS02735 0.27 +0.8 589,140 + DZA65_RS02735 0.30 +0.3 589,225 + DZA65_RS02735 0.39 -0.1 589,225 + DZA65_RS02735 0.39 +1.5 589,225 + DZA65_RS02735 0.39 +0.5 589,225 + DZA65_RS02735 0.39 -1.7 589,225 + DZA65_RS02735 0.39 +1.5 589,226 - DZA65_RS02735 0.39 -1.0 589,233 + +0.1 589,234 - DZA65_RS02735 0.40 -0.8 589,234 - DZA65_RS02735 0.40 +0.0 589,251 + DZA65_RS02735 0.41 +1.7 589,252 - DZA65_RS02735 0.42 +1.8 589,252 - DZA65_RS02735 0.42 +0.3 589,262 + DZA65_RS02735 0.43 -2.7 589,263 - DZA65_RS02735 0.43 +0.6 589,263 - +1.3 589,264 + DZA65_RS02735 0.43 +0.9 589,304 + DZA65_RS02735 0.47 -1.1 589,304 + DZA65_RS02735 0.47 +0.7 589,305 - DZA65_RS02735 0.47 -0.4 589,305 - DZA65_RS02735 0.47 -1.4 589,305 - DZA65_RS02735 0.47 +0.7 589,305 - DZA65_RS02735 0.47 +0.1 589,306 + DZA65_RS02735 0.47 +0.5 589,331 + DZA65_RS02735 0.49 +0.5 589,337 - DZA65_RS02735 0.50 +0.4 589,407 + DZA65_RS02735 0.57 -0.1 589,408 - DZA65_RS02735 0.57 +1.1 589,412 + DZA65_RS02735 0.58 -2.3 589,427 + DZA65_RS02735 0.59 +1.1 589,427 + DZA65_RS02735 0.59 +0.3 589,428 - DZA65_RS02735 0.59 -0.4 589,428 - DZA65_RS02735 0.59 +1.3 589,433 - DZA65_RS02735 0.60 +0.3 589,433 - DZA65_RS02735 0.60 +0.6 589,443 + DZA65_RS02735 0.61 +0.2 589,465 + DZA65_RS02735 0.63 -0.4 589,467 + DZA65_RS02735 0.63 +0.5 589,468 - DZA65_RS02735 0.63 -1.5 589,468 - DZA65_RS02735 0.63 +0.7 589,547 - DZA65_RS02735 0.71 -0.1 589,573 - DZA65_RS02735 0.74 -1.1 589,616 + DZA65_RS02735 0.78 +0.7 589,622 + DZA65_RS02735 0.79 +0.5 589,622 + DZA65_RS02735 0.79 +1.3 589,623 - DZA65_RS02735 0.79 -1.9 589,645 - DZA65_RS02735 0.81 +1.0 589,696 - DZA65_RS02735 0.86 +1.4 589,745 + -0.3 589,746 - +0.9 589,819 - -0.7 589,829 - +0.9 589,829 - +1.3 590,031 + DZA65_RS02740 0.16 -0.6 590,031 + DZA65_RS02740 0.16 +0.5 590,071 - DZA65_RS02740 0.19 +1.3 590,071 - DZA65_RS02740 0.19 +2.7 590,085 + DZA65_RS02740 0.20 +0.3 590,086 - DZA65_RS02740 0.20 -0.7 590,088 + DZA65_RS02740 0.20 +0.2 590,142 + DZA65_RS02740 0.25 -1.5 590,142 + DZA65_RS02740 0.25 +1.2 590,142 + DZA65_RS02740 0.25 -0.5 590,143 - DZA65_RS02740 0.25 +0.1 590,143 - -0.5 590,143 - DZA65_RS02740 0.25 -1.5 590,143 - DZA65_RS02740 0.25 +0.4 590,146 + DZA65_RS02740 0.25 +0.2 590,147 - DZA65_RS02740 0.25 -0.8 590,196 + DZA65_RS02740 0.29 -1.7 590,196 + DZA65_RS02740 0.29 +1.1 590,197 - DZA65_RS02740 0.29 -0.7 590,197 - DZA65_RS02740 0.29 -0.1 590,221 + DZA65_RS02740 0.31 -1.5 590,221 + DZA65_RS02740 0.31 -1.1 590,222 - DZA65_RS02740 0.32 +0.3 590,242 + DZA65_RS02740 0.33 -0.1 590,242 + DZA65_RS02740 0.33 -1.6 590,242 + DZA65_RS02740 0.33 +0.3 590,242 + DZA65_RS02740 0.33 -0.1 590,242 + DZA65_RS02740 0.33 -0.6 590,243 - DZA65_RS02740 0.33 +2.4 590,295 - DZA65_RS02740 0.38 -0.5 590,298 + DZA65_RS02740 0.38 -1.1 590,298 + DZA65_RS02740 0.38 -1.9 590,298 + DZA65_RS02740 0.38 +0.0 590,299 - DZA65_RS02740 0.38 +1.1 590,299 - DZA65_RS02740 0.38 -0.7 590,299 - DZA65_RS02740 0.38 +0.9 590,307 + DZA65_RS02740 0.39 +0.7 590,308 - DZA65_RS02740 0.39 -0.8 590,311 + DZA65_RS02740 0.39 +0.1 590,358 - DZA65_RS02740 0.43 -0.7 590,377 - DZA65_RS02740 0.44 -0.1 590,377 - DZA65_RS02740 0.44 -0.5 590,466 + DZA65_RS02740 0.52 +0.1 590,466 + DZA65_RS02740 0.52 -0.1 590,467 - DZA65_RS02740 0.52 +0.2 590,490 + DZA65_RS02740 0.54 -0.7 590,530 + DZA65_RS02740 0.57 +0.9 590,530 + DZA65_RS02740 0.57 +1.4 590,531 - DZA65_RS02740 0.57 +1.9 590,531 - DZA65_RS02740 0.57 -1.6 590,541 + DZA65_RS02740 0.58 -0.4 590,542 - DZA65_RS02740 0.58 -1.9 590,607 + DZA65_RS02740 0.63 +1.3 590,608 - DZA65_RS02740 0.63 -0.2 590,644 + DZA65_RS02740 0.66 +0.1 590,644 + DZA65_RS02740 0.66 +1.4 590,644 + DZA65_RS02740 0.66 +1.2 590,645 - DZA65_RS02740 0.66 -0.4 590,645 - DZA65_RS02740 0.66 -2.7 590,645 - DZA65_RS02740 0.66 -0.7 590,645 - DZA65_RS02740 0.66 -1.9 590,724 + DZA65_RS02740 0.73 +1.3 590,725 - DZA65_RS02740 0.73 -0.1 590,758 + DZA65_RS02740 0.76 +0.6 590,758 + DZA65_RS02740 0.76 +2.1 590,758 + DZA65_RS02740 0.76 +0.2 590,826 + DZA65_RS02740 0.81 +0.5 590,826 + DZA65_RS02740 0.81 -0.8 590,827 - DZA65_RS02740 0.81 +0.2
Or see this region's nucleotide sequence