Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02390 and DZA65_RS02395 are separated by 678 nucleotides DZA65_RS02395 and DZA65_RS02400 are separated by 26 nucleotides DZA65_RS02400 and DZA65_RS02405 are separated by 18 nucleotides
DZA65_RS02390: DZA65_RS02390 - IS630 family transposase, at 516,135 to 517,172
_RS02390
DZA65_RS02395: DZA65_RS02395 - HTH-type transcriptional activator RhaS, at 517,851 to 518,681
_RS02395
DZA65_RS02400: DZA65_RS02400 - HTH-type transcriptional activator RhaR, at 518,708 to 519,562
_RS02400
DZA65_RS02405: DZA65_RS02405 - hypothetical protein, at 519,581 to 519,865
_RS02405
Position (kb) 517
518
519 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 517.253 kb on + strand at 517.253 kb on + strand at 517.256 kb on + strand at 517.256 kb on + strand at 517.269 kb on + strand at 517.269 kb on + strand at 517.269 kb on + strand at 517.269 kb on + strand at 517.273 kb on + strand at 517.273 kb on + strand at 517.273 kb on + strand at 517.273 kb on + strand at 517.277 kb on + strand at 517.277 kb on + strand at 517.277 kb on + strand at 517.277 kb on + strand at 517.301 kb on - strand at 517.309 kb on - strand at 517.320 kb on - strand at 517.322 kb on + strand at 517.322 kb on + strand at 517.322 kb on + strand at 517.323 kb on - strand at 517.407 kb on - strand at 517.407 kb on - strand at 517.407 kb on - strand at 517.407 kb on - strand at 517.414 kb on - strand at 517.421 kb on - strand at 517.421 kb on - strand at 517.430 kb on + strand at 517.430 kb on + strand at 517.430 kb on + strand at 517.431 kb on - strand at 517.431 kb on - strand at 517.431 kb on - strand at 517.431 kb on - strand at 517.431 kb on - strand at 517.431 kb on - strand at 517.438 kb on + strand at 517.450 kb on - strand at 517.450 kb on - strand at 517.526 kb on + strand at 517.526 kb on + strand at 517.526 kb on + strand at 517.526 kb on + strand at 517.527 kb on - strand at 517.620 kb on + strand at 517.621 kb on - strand at 517.639 kb on + strand at 517.639 kb on + strand at 517.640 kb on - strand at 517.640 kb on - strand at 517.660 kb on + strand at 517.660 kb on + strand at 517.746 kb on - strand at 517.746 kb on - strand at 517.776 kb on + strand at 517.777 kb on - strand at 517.777 kb on - strand at 517.779 kb on + strand at 517.779 kb on + strand at 517.789 kb on + strand at 517.789 kb on + strand at 517.790 kb on - strand at 517.790 kb on - strand at 517.790 kb on - strand at 517.790 kb on - strand at 517.790 kb on - strand at 517.796 kb on - strand at 517.806 kb on + strand at 517.806 kb on + strand at 517.807 kb on - strand at 517.807 kb on - strand at 517.807 kb on - strand at 517.807 kb on - strand at 517.807 kb on - strand at 517.812 kb on + strand at 517.812 kb on + strand at 517.812 kb on + strand at 517.812 kb on + strand at 517.812 kb on + strand at 517.813 kb on - strand at 517.813 kb on - strand at 517.813 kb on - strand at 517.813 kb on - strand at 517.813 kb on - strand at 517.824 kb on + strand at 517.824 kb on + strand at 517.824 kb on + strand at 517.825 kb on - strand at 517.944 kb on + strand, within DZA65_RS02395 at 517.945 kb on - strand, within DZA65_RS02395 at 518.314 kb on + strand, within DZA65_RS02395 at 518.315 kb on - strand at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.400 kb on - strand, within DZA65_RS02395 at 518.400 kb on - strand, within DZA65_RS02395 at 518.400 kb on - strand, within DZA65_RS02395 at 518.459 kb on + strand, within DZA65_RS02395 at 518.459 kb on + strand, within DZA65_RS02395 at 518.459 kb on + strand, within DZA65_RS02395 at 518.459 kb on + strand, within DZA65_RS02395 at 518.460 kb on - strand, within DZA65_RS02395 at 518.460 kb on - strand, within DZA65_RS02395 at 518.460 kb on - strand, within DZA65_RS02395 at 518.460 kb on - strand, within DZA65_RS02395 at 518.460 kb on - strand at 518.460 kb on - strand, within DZA65_RS02395 at 518.679 kb on + strand at 518.679 kb on + strand at 518.679 kb on + strand at 518.679 kb on + strand at 518.680 kb on - strand at 518.680 kb on - strand at 518.680 kb on - strand at 518.680 kb on - strand at 518.680 kb on - strand at 518.685 kb on + strand at 518.686 kb on - strand at 518.730 kb on + strand at 518.730 kb on + strand at 518.730 kb on + strand at 518.731 kb on - strand at 518.744 kb on + strand at 518.744 kb on + strand at 518.744 kb on + strand at 518.745 kb on - strand at 518.745 kb on - strand at 518.764 kb on + strand at 518.764 kb on + strand at 518.764 kb on + strand at 518.890 kb on + strand, within DZA65_RS02400 at 518.890 kb on + strand, within DZA65_RS02400 at 518.890 kb on + strand, within DZA65_RS02400 at 518.890 kb on + strand, within DZA65_RS02400 at 518.909 kb on + strand, within DZA65_RS02400 at 518.909 kb on + strand, within DZA65_RS02400 at 518.909 kb on + strand, within DZA65_RS02400 at 518.909 kb on + strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.936 kb on + strand, within DZA65_RS02400 at 518.936 kb on + strand, within DZA65_RS02400 at 518.936 kb on + strand, within DZA65_RS02400 at 518.937 kb on - strand, within DZA65_RS02400 at 518.968 kb on + strand, within DZA65_RS02400 at 518.968 kb on + strand, within DZA65_RS02400 at 518.969 kb on - strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.977 kb on + strand, within DZA65_RS02400 at 519.201 kb on - strand, within DZA65_RS02400 at 519.337 kb on + strand, within DZA65_RS02400 at 519.377 kb on + strand, within DZA65_RS02400 at 519.423 kb on - strand, within DZA65_RS02400 at 519.423 kb on - strand, within DZA65_RS02400 at 519.479 kb on + strand at 519.582 kb on + strand at 519.582 kb on + strand at 519.583 kb on - strand at 519.621 kb on + strand, within DZA65_RS02405 at 519.622 kb on - strand, within DZA65_RS02405 at 519.643 kb on + strand, within DZA65_RS02405 at 519.643 kb on + strand, within DZA65_RS02405 at 519.644 kb on - strand, within DZA65_RS02405 at 519.647 kb on + strand, within DZA65_RS02405 at 519.648 kb on - strand, within DZA65_RS02405 at 519.648 kb on - strand, within DZA65_RS02405
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 517,253 + +0.9 517,253 + +1.1 517,256 + -1.4 517,256 + +0.0 517,269 + +0.4 517,269 + +1.6 517,269 + +0.6 517,269 + -1.9 517,273 + +0.4 517,273 + -0.0 517,273 + -1.7 517,273 + +0.8 517,277 + -0.1 517,277 + +0.4 517,277 + -1.9 517,277 + -0.2 517,301 - +1.3 517,309 - +0.2 517,320 - +1.1 517,322 + +1.2 517,322 + -0.6 517,322 + +0.4 517,323 - -1.1 517,407 - -0.6 517,407 - -1.1 517,407 - -0.1 517,407 - +0.0 517,414 - +0.7 517,421 - -0.5 517,421 - +0.7 517,430 + -1.1 517,430 + -1.0 517,430 + +0.2 517,431 - -1.7 517,431 - +0.9 517,431 - -0.1 517,431 - +0.1 517,431 - +1.8 517,431 - +1.1 517,438 + +0.2 517,450 - +0.3 517,450 - -1.0 517,526 + +1.3 517,526 + -0.8 517,526 + -0.2 517,526 + -0.0 517,527 - +0.6 517,620 + -0.2 517,621 - +0.1 517,639 + -0.6 517,639 + -1.4 517,640 - -1.1 517,640 - +0.9 517,660 + +1.2 517,660 + -0.3 517,746 - +1.8 517,746 - -1.0 517,776 + +0.2 517,777 - +1.9 517,777 - -0.7 517,779 + +0.8 517,779 + -1.6 517,789 + -0.5 517,789 + +1.6 517,790 - +0.9 517,790 - -1.4 517,790 - -0.1 517,790 - +0.6 517,790 - +0.2 517,796 - +1.5 517,806 + +0.9 517,806 + +1.2 517,807 - -0.7 517,807 - -0.2 517,807 - +0.9 517,807 - +0.0 517,807 - -0.4 517,812 + -1.7 517,812 + -1.4 517,812 + +0.3 517,812 + -0.0 517,812 + +1.1 517,813 - -0.3 517,813 - +0.8 517,813 - -0.7 517,813 - +0.4 517,813 - -0.4 517,824 + -2.4 517,824 + +0.3 517,824 + +0.9 517,825 - -0.7 517,944 + DZA65_RS02395 0.11 -0.0 517,945 - DZA65_RS02395 0.11 -2.1 518,314 + DZA65_RS02395 0.56 +0.9 518,315 - -1.1 518,399 + DZA65_RS02395 0.66 -1.0 518,399 + DZA65_RS02395 0.66 +2.0 518,399 + DZA65_RS02395 0.66 -0.3 518,399 + DZA65_RS02395 0.66 +1.2 518,399 + DZA65_RS02395 0.66 +0.2 518,399 + DZA65_RS02395 0.66 +0.4 518,399 + DZA65_RS02395 0.66 -1.3 518,400 - DZA65_RS02395 0.66 +1.2 518,400 - DZA65_RS02395 0.66 +0.3 518,400 - DZA65_RS02395 0.66 +0.6 518,459 + DZA65_RS02395 0.73 -0.5 518,459 + DZA65_RS02395 0.73 -0.1 518,459 + DZA65_RS02395 0.73 +0.6 518,459 + DZA65_RS02395 0.73 -1.7 518,460 - DZA65_RS02395 0.73 +0.4 518,460 - DZA65_RS02395 0.73 +0.6 518,460 - DZA65_RS02395 0.73 -1.9 518,460 - DZA65_RS02395 0.73 -0.5 518,460 - -0.7 518,460 - DZA65_RS02395 0.73 +1.4 518,679 + +0.2 518,679 + -0.3 518,679 + +0.2 518,679 + -0.3 518,680 - +0.5 518,680 - +1.2 518,680 - +0.6 518,680 - +0.4 518,680 - -0.3 518,685 + -1.1 518,686 - +0.9 518,730 + -0.2 518,730 + -0.5 518,730 + +1.2 518,731 - +1.2 518,744 + +0.5 518,744 + -0.4 518,744 + -0.7 518,745 - +0.1 518,745 - -1.0 518,764 + -3.3 518,764 + -0.5 518,764 + -0.3 518,890 + DZA65_RS02400 0.21 +0.9 518,890 + DZA65_RS02400 0.21 -0.7 518,890 + DZA65_RS02400 0.21 -0.7 518,890 + DZA65_RS02400 0.21 -0.5 518,909 + DZA65_RS02400 0.24 -0.7 518,909 + DZA65_RS02400 0.24 -0.5 518,909 + DZA65_RS02400 0.24 +1.1 518,909 + DZA65_RS02400 0.24 -0.9 518,910 - DZA65_RS02400 0.24 +0.3 518,910 - DZA65_RS02400 0.24 +0.9 518,910 - DZA65_RS02400 0.24 -0.4 518,910 - DZA65_RS02400 0.24 +0.5 518,910 - DZA65_RS02400 0.24 +0.6 518,910 - DZA65_RS02400 0.24 +0.2 518,936 + DZA65_RS02400 0.27 +0.6 518,936 + DZA65_RS02400 0.27 -1.2 518,936 + DZA65_RS02400 0.27 -1.9 518,937 - DZA65_RS02400 0.27 +0.8 518,968 + DZA65_RS02400 0.30 -1.7 518,968 + DZA65_RS02400 0.30 +0.9 518,969 - DZA65_RS02400 0.31 +0.3 518,975 + DZA65_RS02400 0.31 -1.3 518,975 + DZA65_RS02400 0.31 +0.7 518,975 + DZA65_RS02400 0.31 -3.2 518,975 + DZA65_RS02400 0.31 -2.3 518,975 + DZA65_RS02400 0.31 -0.7 518,975 + DZA65_RS02400 0.31 -1.1 518,975 + DZA65_RS02400 0.31 +0.2 518,976 - DZA65_RS02400 0.31 -1.3 518,976 - DZA65_RS02400 0.31 -0.1 518,976 - DZA65_RS02400 0.31 -1.7 518,976 - DZA65_RS02400 0.31 -0.6 518,976 - DZA65_RS02400 0.31 -1.1 518,976 - DZA65_RS02400 0.31 +0.9 518,977 + DZA65_RS02400 0.31 -0.9 519,201 - DZA65_RS02400 0.58 -1.1 519,337 + DZA65_RS02400 0.74 -0.5 519,377 + DZA65_RS02400 0.78 +1.1 519,423 - DZA65_RS02400 0.84 -1.1 519,423 - DZA65_RS02400 0.84 -2.1 519,479 + -0.3 519,582 + +0.2 519,582 + -0.6 519,583 - +1.1 519,621 + DZA65_RS02405 0.14 -0.9 519,622 - DZA65_RS02405 0.14 -0.1 519,643 + DZA65_RS02405 0.22 -0.2 519,643 + DZA65_RS02405 0.22 +1.2 519,644 - DZA65_RS02405 0.22 -0.1 519,647 + DZA65_RS02405 0.23 +1.1 519,648 - DZA65_RS02405 0.24 -0.0 519,648 - DZA65_RS02405 0.24 +0.1
Or see this region's nucleotide sequence