Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01905 and DZA65_RS01910 are separated by 102 nucleotides DZA65_RS01910 and DZA65_RS01915 are separated by 54 nucleotides DZA65_RS01915 and DZA65_RS01920 overlap by 4 nucleotides DZA65_RS01920 and DZA65_RS01925 are separated by 124 nucleotides
DZA65_RS01905: DZA65_RS01905 - ABC transporter ATP-binding protein, at 419,301 to 420,896
_RS01905
DZA65_RS01910: DZA65_RS01910 - Hcp family type VI secretion system effector, at 420,999 to 421,478
_RS01910
DZA65_RS01915: DZA65_RS01915 - hypothetical protein, at 421,533 to 422,132
_RS01915
DZA65_RS01920: DZA65_RS01920 - DUF1311 domain-containing protein, at 422,129 to 422,509
_RS01920
DZA65_RS01925: DZA65_RS01925 - proteasome-type protease, at 422,634 to 423,368
_RS01925
Position (kb) 421
422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 420.560 kb on - strand, within DZA65_RS01905 at 420.597 kb on - strand, within DZA65_RS01905 at 420.693 kb on + strand, within DZA65_RS01905 at 420.693 kb on + strand, within DZA65_RS01905 at 420.694 kb on - strand, within DZA65_RS01905 at 420.694 kb on - strand, within DZA65_RS01905 at 420.716 kb on - strand, within DZA65_RS01905 at 420.820 kb on - strand at 420.894 kb on + strand at 420.895 kb on - strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.926 kb on - strand at 420.926 kb on - strand at 420.926 kb on - strand at 420.926 kb on - strand at 420.926 kb on - strand at 420.927 kb on + strand at 420.927 kb on + strand at 420.927 kb on + strand at 420.927 kb on + strand at 420.927 kb on + strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.939 kb on + strand at 420.940 kb on - strand at 420.968 kb on - strand at 420.973 kb on + strand at 420.973 kb on + strand at 420.977 kb on + strand at 420.977 kb on + strand at 420.981 kb on + strand at 420.998 kb on + strand at 420.998 kb on + strand at 421.011 kb on - strand at 421.011 kb on - strand at 421.114 kb on + strand, within DZA65_RS01910 at 421.115 kb on - strand, within DZA65_RS01910 at 421.115 kb on - strand, within DZA65_RS01910 at 421.115 kb on - strand, within DZA65_RS01910 at 421.121 kb on - strand, within DZA65_RS01910 at 421.139 kb on + strand, within DZA65_RS01910 at 421.139 kb on + strand, within DZA65_RS01910 at 421.140 kb on - strand, within DZA65_RS01910 at 421.217 kb on + strand, within DZA65_RS01910 at 421.218 kb on - strand, within DZA65_RS01910 at 421.223 kb on + strand, within DZA65_RS01910 at 421.226 kb on + strand, within DZA65_RS01910 at 421.250 kb on + strand, within DZA65_RS01910 at 421.358 kb on + strand, within DZA65_RS01910 at 421.384 kb on - strand, within DZA65_RS01910 at 421.395 kb on - strand, within DZA65_RS01910 at 421.449 kb on + strand at 421.450 kb on - strand at 421.451 kb on + strand at 421.452 kb on - strand at 421.454 kb on + strand at 421.454 kb on + strand at 421.454 kb on + strand at 421.455 kb on - strand at 421.455 kb on - strand at 421.517 kb on + strand at 421.519 kb on + strand at 421.519 kb on + strand at 421.521 kb on + strand at 421.634 kb on + strand, within DZA65_RS01915 at 421.634 kb on + strand, within DZA65_RS01915 at 421.635 kb on - strand, within DZA65_RS01915 at 421.635 kb on - strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.713 kb on + strand, within DZA65_RS01915 at 421.714 kb on - strand, within DZA65_RS01915 at 421.714 kb on - strand, within DZA65_RS01915 at 421.745 kb on + strand, within DZA65_RS01915 at 421.821 kb on - strand, within DZA65_RS01915 at 421.821 kb on - strand, within DZA65_RS01915 at 421.821 kb on - strand, within DZA65_RS01915 at 421.821 kb on - strand, within DZA65_RS01915 at 421.854 kb on - strand, within DZA65_RS01915 at 421.880 kb on - strand, within DZA65_RS01915 at 421.895 kb on + strand, within DZA65_RS01915 at 421.917 kb on - strand, within DZA65_RS01915 at 421.969 kb on + strand, within DZA65_RS01915 at 422.219 kb on + strand, within DZA65_RS01920 at 422.221 kb on + strand, within DZA65_RS01920 at 422.445 kb on - strand, within DZA65_RS01920 at 422.455 kb on + strand, within DZA65_RS01920 at 422.456 kb on - strand, within DZA65_RS01920 at 422.456 kb on - strand, within DZA65_RS01920 at 422.462 kb on - strand, within DZA65_RS01920 at 422.499 kb on - strand at 422.516 kb on - strand at 422.523 kb on + strand at 422.524 kb on - strand at 422.526 kb on - strand at 422.540 kb on + strand at 422.541 kb on - strand at 422.572 kb on + strand at 422.611 kb on - strand at 422.611 kb on - strand at 422.673 kb on - strand at 422.716 kb on + strand, within DZA65_RS01925 at 422.716 kb on + strand, within DZA65_RS01925 at 422.716 kb on + strand, within DZA65_RS01925 at 422.716 kb on + strand, within DZA65_RS01925 at 422.716 kb on + strand, within DZA65_RS01925 at 422.716 kb on + strand, within DZA65_RS01925 at 422.717 kb on - strand, within DZA65_RS01925 at 422.717 kb on - strand, within DZA65_RS01925 at 422.717 kb on - strand, within DZA65_RS01925 at 422.773 kb on + strand, within DZA65_RS01925 at 422.773 kb on + strand, within DZA65_RS01925 at 422.773 kb on + strand, within DZA65_RS01925 at 422.774 kb on - strand, within DZA65_RS01925 at 422.908 kb on + strand, within DZA65_RS01925 at 422.908 kb on + strand, within DZA65_RS01925 at 422.908 kb on + strand, within DZA65_RS01925 at 422.922 kb on + strand, within DZA65_RS01925 at 422.933 kb on - strand, within DZA65_RS01925 at 422.933 kb on - strand, within DZA65_RS01925 at 422.974 kb on + strand, within DZA65_RS01925 at 422.974 kb on + strand, within DZA65_RS01925 at 422.974 kb on + strand, within DZA65_RS01925 at 422.974 kb on + strand, within DZA65_RS01925 at 422.975 kb on - strand, within DZA65_RS01925 at 423.071 kb on + strand, within DZA65_RS01925 at 423.072 kb on - strand, within DZA65_RS01925 at 423.072 kb on - strand, within DZA65_RS01925 at 423.094 kb on - strand, within DZA65_RS01925 at 423.124 kb on + strand, within DZA65_RS01925 at 423.124 kb on + strand, within DZA65_RS01925 at 423.125 kb on - strand, within DZA65_RS01925
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 420,560 - DZA65_RS01905 0.79 -1.0 420,597 - DZA65_RS01905 0.81 -2.4 420,693 + DZA65_RS01905 0.87 -0.4 420,693 + DZA65_RS01905 0.87 -0.8 420,694 - DZA65_RS01905 0.87 -2.2 420,694 - DZA65_RS01905 0.87 +1.0 420,716 - DZA65_RS01905 0.89 +0.3 420,820 - +1.4 420,894 + +2.8 420,895 - -1.8 420,925 + +0.2 420,925 + -1.6 420,925 + -0.0 420,925 + -0.3 420,925 + -0.3 420,925 + +0.3 420,925 + -1.8 420,925 + +0.7 420,926 - -0.7 420,926 - +0.8 420,926 - -2.0 420,926 - -2.5 420,926 - +0.5 420,927 + -1.7 420,927 + -0.7 420,927 + -2.8 420,927 + -2.0 420,927 + -1.2 420,928 - -0.8 420,928 - -0.5 420,928 - -0.0 420,928 - +0.1 420,928 - -0.6 420,928 - -0.4 420,928 - -1.6 420,928 - -0.4 420,939 + +2.0 420,940 - +1.6 420,968 - -2.3 420,973 + +0.7 420,973 + -1.0 420,977 + -0.0 420,977 + -1.7 420,981 + -2.0 420,998 + -1.0 420,998 + -0.8 421,011 - -1.5 421,011 - -0.7 421,114 + DZA65_RS01910 0.24 -1.7 421,115 - DZA65_RS01910 0.24 +0.4 421,115 - DZA65_RS01910 0.24 +0.4 421,115 - DZA65_RS01910 0.24 +0.7 421,121 - DZA65_RS01910 0.25 -0.1 421,139 + DZA65_RS01910 0.29 +1.1 421,139 + DZA65_RS01910 0.29 -0.3 421,140 - DZA65_RS01910 0.29 -0.4 421,217 + DZA65_RS01910 0.45 -0.5 421,218 - DZA65_RS01910 0.46 -0.4 421,223 + DZA65_RS01910 0.47 +0.5 421,226 + DZA65_RS01910 0.47 -0.2 421,250 + DZA65_RS01910 0.52 +1.1 421,358 + DZA65_RS01910 0.75 -1.4 421,384 - DZA65_RS01910 0.80 +0.6 421,395 - DZA65_RS01910 0.82 -1.4 421,449 + +0.8 421,450 - +0.3 421,451 + +0.4 421,452 - -0.5 421,454 + -1.7 421,454 + +0.7 421,454 + -1.0 421,455 - -1.4 421,455 - -0.0 421,517 + +1.2 421,519 + +2.1 421,519 + -2.0 421,521 + +0.2 421,634 + DZA65_RS01915 0.17 +0.6 421,634 + DZA65_RS01915 0.17 +0.2 421,635 - DZA65_RS01915 0.17 -0.3 421,635 - DZA65_RS01915 0.17 +0.4 421,710 + DZA65_RS01915 0.29 -0.2 421,710 + DZA65_RS01915 0.29 +0.7 421,710 + DZA65_RS01915 0.29 -0.6 421,710 + DZA65_RS01915 0.29 +0.7 421,710 + DZA65_RS01915 0.29 -0.9 421,710 + DZA65_RS01915 0.29 -0.5 421,710 + DZA65_RS01915 0.29 -0.3 421,711 - DZA65_RS01915 0.30 -0.8 421,711 - DZA65_RS01915 0.30 -0.1 421,711 - DZA65_RS01915 0.30 -0.0 421,711 - DZA65_RS01915 0.30 +0.6 421,711 - DZA65_RS01915 0.30 -0.0 421,711 - DZA65_RS01915 0.30 +0.4 421,713 + DZA65_RS01915 0.30 -0.4 421,714 - DZA65_RS01915 0.30 +1.1 421,714 - DZA65_RS01915 0.30 +0.7 421,745 + DZA65_RS01915 0.35 +0.3 421,821 - DZA65_RS01915 0.48 -1.6 421,821 - DZA65_RS01915 0.48 -0.3 421,821 - DZA65_RS01915 0.48 +0.6 421,821 - DZA65_RS01915 0.48 +0.8 421,854 - DZA65_RS01915 0.54 -1.2 421,880 - DZA65_RS01915 0.58 -0.2 421,895 + DZA65_RS01915 0.60 -0.5 421,917 - DZA65_RS01915 0.64 -1.0 421,969 + DZA65_RS01915 0.73 -1.8 422,219 + DZA65_RS01920 0.24 -1.4 422,221 + DZA65_RS01920 0.24 -0.9 422,445 - DZA65_RS01920 0.83 -1.2 422,455 + DZA65_RS01920 0.86 +1.4 422,456 - DZA65_RS01920 0.86 +0.4 422,456 - DZA65_RS01920 0.86 +1.6 422,462 - DZA65_RS01920 0.87 +0.5 422,499 - -1.6 422,516 - -1.2 422,523 + +1.3 422,524 - +1.2 422,526 - -0.4 422,540 + +0.3 422,541 - -0.5 422,572 + +0.8 422,611 - +1.6 422,611 - +1.0 422,673 - +1.7 422,716 + DZA65_RS01925 0.11 +0.5 422,716 + DZA65_RS01925 0.11 +0.6 422,716 + DZA65_RS01925 0.11 +1.2 422,716 + DZA65_RS01925 0.11 +1.0 422,716 + DZA65_RS01925 0.11 +0.7 422,716 + DZA65_RS01925 0.11 -0.2 422,717 - DZA65_RS01925 0.11 +0.3 422,717 - DZA65_RS01925 0.11 +0.3 422,717 - DZA65_RS01925 0.11 -0.2 422,773 + DZA65_RS01925 0.19 -1.8 422,773 + DZA65_RS01925 0.19 -0.0 422,773 + DZA65_RS01925 0.19 +0.5 422,774 - DZA65_RS01925 0.19 -0.0 422,908 + DZA65_RS01925 0.37 +0.6 422,908 + DZA65_RS01925 0.37 -2.2 422,908 + DZA65_RS01925 0.37 +0.2 422,922 + DZA65_RS01925 0.39 -1.2 422,933 - DZA65_RS01925 0.41 +0.3 422,933 - DZA65_RS01925 0.41 -1.8 422,974 + DZA65_RS01925 0.46 +0.5 422,974 + DZA65_RS01925 0.46 -0.6 422,974 + DZA65_RS01925 0.46 +0.1 422,974 + DZA65_RS01925 0.46 +1.0 422,975 - DZA65_RS01925 0.46 -0.7 423,071 + DZA65_RS01925 0.59 +0.3 423,072 - DZA65_RS01925 0.60 +0.1 423,072 - DZA65_RS01925 0.60 +1.4 423,094 - DZA65_RS01925 0.63 +3.3 423,124 + DZA65_RS01925 0.67 +0.2 423,124 + DZA65_RS01925 0.67 -0.4 423,125 - DZA65_RS01925 0.67 -1.5
Or see this region's nucleotide sequence