Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01710 and DZA65_RS01715 are separated by 405 nucleotides DZA65_RS01715 and DZA65_RS01720 overlap by 4 nucleotides DZA65_RS01720 and DZA65_RS01725 are separated by 205 nucleotides
DZA65_RS01710: DZA65_RS01710 - outer membrane channel protein TolC, at 371,466 to 372,878
_RS01710
DZA65_RS01715: DZA65_RS01715 - ADP-ribose diphosphatase, at 373,284 to 373,937
_RS01715
DZA65_RS01720: DZA65_RS01720 - DUF1249 family protein, at 373,934 to 374,359
_RS01720
DZA65_RS01725: DZA65_RS01725 - 3',5'-cyclic-AMP phosphodiesterase, at 374,565 to 375,392
_RS01725
Position (kb) 373
374 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 372.439 kb on + strand, within DZA65_RS01710 at 372.931 kb on + strand at 372.931 kb on + strand at 372.931 kb on + strand at 372.932 kb on - strand at 372.932 kb on - strand at 372.932 kb on - strand at 372.932 kb on - strand at 372.932 kb on - strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.933 kb on + strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.934 kb on - strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.968 kb on + strand at 372.968 kb on + strand at 372.969 kb on - strand at 372.969 kb on - strand at 372.969 kb on - strand at 372.969 kb on - strand at 372.969 kb on - strand at 373.020 kb on + strand at 373.020 kb on + strand at 373.021 kb on - strand at 373.021 kb on - strand at 373.021 kb on - strand at 373.025 kb on - strand at 373.116 kb on - strand at 373.144 kb on + strand at 373.144 kb on + strand at 373.144 kb on + strand at 373.145 kb on - strand at 373.145 kb on - strand at 373.165 kb on - strand at 373.198 kb on + strand at 373.198 kb on + strand at 373.198 kb on + strand at 373.198 kb on + strand at 373.198 kb on + strand at 373.199 kb on - strand at 373.199 kb on - strand at 373.284 kb on - strand at 373.298 kb on + strand at 373.298 kb on + strand at 373.298 kb on + strand at 373.299 kb on - strand at 373.299 kb on - strand at 373.299 kb on - strand at 373.299 kb on - strand at 373.317 kb on - strand at 373.317 kb on - strand at 373.317 kb on - strand at 373.334 kb on + strand at 373.334 kb on + strand at 373.348 kb on + strand at 373.348 kb on + strand at 373.349 kb on - strand at 373.356 kb on - strand, within DZA65_RS01715 at 373.356 kb on - strand, within DZA65_RS01715 at 373.374 kb on + strand, within DZA65_RS01715 at 373.374 kb on + strand, within DZA65_RS01715 at 373.375 kb on - strand, within DZA65_RS01715 at 373.375 kb on - strand, within DZA65_RS01715 at 373.375 kb on - strand, within DZA65_RS01715 at 373.375 kb on - strand, within DZA65_RS01715 at 373.375 kb on - strand, within DZA65_RS01715 at 373.375 kb on - strand, within DZA65_RS01715 at 373.375 kb on - strand, within DZA65_RS01715 at 373.495 kb on - strand, within DZA65_RS01715 at 373.525 kb on + strand, within DZA65_RS01715 at 373.525 kb on + strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.526 kb on - strand, within DZA65_RS01715 at 373.690 kb on - strand, within DZA65_RS01715 at 373.690 kb on - strand, within DZA65_RS01715 at 373.690 kb on - strand, within DZA65_RS01715 at 373.690 kb on - strand, within DZA65_RS01715 at 373.735 kb on + strand, within DZA65_RS01715 at 373.766 kb on + strand, within DZA65_RS01715 at 373.796 kb on + strand, within DZA65_RS01715 at 373.805 kb on - strand, within DZA65_RS01715 at 373.830 kb on + strand, within DZA65_RS01715 at 373.830 kb on + strand, within DZA65_RS01715 at 373.830 kb on + strand, within DZA65_RS01715 at 373.831 kb on - strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.946 kb on + strand at 373.946 kb on + strand at 373.946 kb on + strand at 373.947 kb on - strand at 373.947 kb on - strand at 373.949 kb on - strand at 373.949 kb on - strand at 373.949 kb on - strand at 373.949 kb on - strand at 374.001 kb on + strand, within DZA65_RS01720 at 374.002 kb on - strand, within DZA65_RS01720 at 374.002 kb on - strand, within DZA65_RS01720 at 374.021 kb on - strand, within DZA65_RS01720 at 374.048 kb on + strand, within DZA65_RS01720 at 374.069 kb on + strand, within DZA65_RS01720 at 374.070 kb on - strand, within DZA65_RS01720 at 374.076 kb on + strand, within DZA65_RS01720 at 374.092 kb on + strand, within DZA65_RS01720 at 374.093 kb on - strand, within DZA65_RS01720 at 374.099 kb on + strand, within DZA65_RS01720 at 374.099 kb on + strand, within DZA65_RS01720 at 374.100 kb on - strand, within DZA65_RS01720 at 374.100 kb on - strand, within DZA65_RS01720 at 374.100 kb on - strand, within DZA65_RS01720 at 374.100 kb on - strand, within DZA65_RS01720 at 374.145 kb on - strand, within DZA65_RS01720 at 374.177 kb on + strand, within DZA65_RS01720 at 374.178 kb on - strand, within DZA65_RS01720 at 374.178 kb on - strand, within DZA65_RS01720 at 374.180 kb on + strand, within DZA65_RS01720 at 374.180 kb on + strand, within DZA65_RS01720 at 374.181 kb on - strand, within DZA65_RS01720 at 374.181 kb on - strand, within DZA65_RS01720 at 374.231 kb on - strand, within DZA65_RS01720 at 374.241 kb on - strand, within DZA65_RS01720 at 374.241 kb on - strand, within DZA65_RS01720 at 374.262 kb on + strand, within DZA65_RS01720 at 374.262 kb on + strand, within DZA65_RS01720 at 374.262 kb on + strand, within DZA65_RS01720 at 374.263 kb on - strand, within DZA65_RS01720 at 374.263 kb on - strand, within DZA65_RS01720 at 374.263 kb on - strand, within DZA65_RS01720 at 374.263 kb on - strand, within DZA65_RS01720 at 374.263 kb on - strand, within DZA65_RS01720 at 374.319 kb on - strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.357 kb on + strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.358 kb on - strand at 374.361 kb on + strand at 374.361 kb on + strand at 374.361 kb on + strand at 374.361 kb on + strand at 374.361 kb on + strand at 374.361 kb on + strand at 374.362 kb on - strand at 374.362 kb on - strand at 374.362 kb on - strand at 374.362 kb on - strand at 374.362 kb on - strand at 374.362 kb on - strand at 374.362 kb on - strand at 374.362 kb on - strand at 374.363 kb on + strand at 374.363 kb on + strand at 374.363 kb on + strand at 374.363 kb on + strand at 374.372 kb on + strand at 374.372 kb on + strand at 374.372 kb on + strand at 374.373 kb on - strand at 374.373 kb on - strand at 374.449 kb on + strand at 374.449 kb on + strand at 374.449 kb on + strand at 374.450 kb on - strand at 374.450 kb on - strand at 374.509 kb on + strand at 374.510 kb on - strand at 374.513 kb on + strand at 374.514 kb on - strand at 374.514 kb on - strand at 374.514 kb on - strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.562 kb on + strand at 374.562 kb on + strand at 374.562 kb on + strand at 374.563 kb on - strand at 374.563 kb on - strand at 374.623 kb on + strand at 374.623 kb on + strand at 374.623 kb on + strand at 374.623 kb on + strand at 374.624 kb on - strand at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.679 kb on + strand, within DZA65_RS01725 at 374.679 kb on + strand, within DZA65_RS01725 at 374.679 kb on + strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.771 kb on + strand, within DZA65_RS01725 at 374.771 kb on + strand, within DZA65_RS01725 at 374.772 kb on - strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.804 kb on + strand, within DZA65_RS01725 at 374.805 kb on - strand, within DZA65_RS01725
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 372,439 + DZA65_RS01710 0.69 +0.3 372,931 + -0.0 372,931 + +1.4 372,931 + -3.0 372,932 - -1.3 372,932 - +1.4 372,932 - -0.0 372,932 - -0.1 372,932 - -1.9 372,933 + -1.8 372,933 + -0.3 372,933 + -1.3 372,933 + -1.0 372,933 + -2.7 372,933 + +0.3 372,933 + -1.6 372,933 + -0.5 372,933 + +1.3 372,933 + -1.8 372,933 + +0.2 372,933 + -1.0 372,933 + +0.3 372,933 + -0.6 372,933 + -0.0 372,934 - +0.1 372,934 - -1.2 372,934 - +1.7 372,934 - +1.4 372,934 - +1.0 372,934 - +0.7 372,934 - +0.5 372,934 - -1.0 372,934 - -1.0 372,934 - +0.7 372,934 - -1.3 372,934 - -0.8 372,934 - -3.2 372,934 - -0.9 372,934 - -0.0 372,934 - +1.0 372,934 - -1.0 372,934 - +1.0 372,934 - +0.5 372,934 - -0.2 372,934 - -0.5 372,934 - -0.5 372,934 - +0.8 372,934 - +0.4 372,934 - -2.8 372,934 - -0.9 372,934 - +1.2 372,934 - -0.4 372,946 + -0.5 372,946 + -1.4 372,946 + -1.0 372,947 - -0.2 372,947 - -1.8 372,968 + +1.0 372,968 + -2.3 372,969 - -0.0 372,969 - -0.0 372,969 - +0.8 372,969 - +1.1 372,969 - +1.0 373,020 + -0.0 373,020 + +0.4 373,021 - -2.7 373,021 - -0.9 373,021 - +0.1 373,025 - -2.0 373,116 - +0.8 373,144 + -1.6 373,144 + -1.3 373,144 + +1.6 373,145 - -0.0 373,145 - -1.2 373,165 - -0.8 373,198 + -2.3 373,198 + -0.3 373,198 + +1.0 373,198 + -1.1 373,198 + -0.0 373,199 - -1.2 373,199 - -0.3 373,284 - -0.8 373,298 + -1.3 373,298 + +0.3 373,298 + +1.4 373,299 - +1.0 373,299 - -1.0 373,299 - +0.3 373,299 - +0.6 373,317 - -0.9 373,317 - +0.1 373,317 - +1.8 373,334 + +1.3 373,334 + -1.2 373,348 + +0.5 373,348 + +1.0 373,349 - +1.2 373,356 - DZA65_RS01715 0.11 +0.4 373,356 - DZA65_RS01715 0.11 -2.5 373,374 + DZA65_RS01715 0.14 +0.6 373,374 + DZA65_RS01715 0.14 +0.1 373,375 - DZA65_RS01715 0.14 -0.4 373,375 - DZA65_RS01715 0.14 +1.1 373,375 - DZA65_RS01715 0.14 +0.0 373,375 - DZA65_RS01715 0.14 +0.1 373,375 - DZA65_RS01715 0.14 +0.4 373,375 - DZA65_RS01715 0.14 +0.4 373,375 - DZA65_RS01715 0.14 +0.2 373,495 - DZA65_RS01715 0.32 +0.3 373,525 + DZA65_RS01715 0.37 -1.8 373,525 + DZA65_RS01715 0.37 -0.0 373,526 - DZA65_RS01715 0.37 +0.6 373,526 - DZA65_RS01715 0.37 -0.7 373,526 - DZA65_RS01715 0.37 -1.0 373,526 - DZA65_RS01715 0.37 +1.4 373,526 - DZA65_RS01715 0.37 -0.7 373,526 - DZA65_RS01715 0.37 +0.9 373,526 - DZA65_RS01715 0.37 +2.2 373,526 - DZA65_RS01715 0.37 -1.3 373,526 - DZA65_RS01715 0.37 +1.7 373,690 - DZA65_RS01715 0.62 -0.5 373,690 - DZA65_RS01715 0.62 -1.8 373,690 - DZA65_RS01715 0.62 -1.2 373,690 - DZA65_RS01715 0.62 +1.3 373,735 + DZA65_RS01715 0.69 +1.6 373,766 + DZA65_RS01715 0.74 -0.6 373,796 + DZA65_RS01715 0.78 -1.6 373,805 - DZA65_RS01715 0.80 +0.9 373,830 + DZA65_RS01715 0.83 -0.6 373,830 + DZA65_RS01715 0.83 +1.1 373,830 + DZA65_RS01715 0.83 +1.4 373,831 - -1.3 373,912 + -0.0 373,912 + -0.3 373,946 + +0.7 373,946 + +1.0 373,946 + -2.2 373,947 - -0.5 373,947 - +2.0 373,949 - +0.4 373,949 - +0.3 373,949 - +1.2 373,949 - +0.1 374,001 + DZA65_RS01720 0.16 -0.6 374,002 - DZA65_RS01720 0.16 -0.6 374,002 - DZA65_RS01720 0.16 -1.8 374,021 - DZA65_RS01720 0.20 +1.1 374,048 + DZA65_RS01720 0.27 -2.0 374,069 + DZA65_RS01720 0.32 +1.0 374,070 - DZA65_RS01720 0.32 -0.8 374,076 + DZA65_RS01720 0.33 -0.0 374,092 + DZA65_RS01720 0.37 +0.1 374,093 - DZA65_RS01720 0.37 +0.2 374,099 + DZA65_RS01720 0.39 -1.5 374,099 + DZA65_RS01720 0.39 -2.3 374,100 - DZA65_RS01720 0.39 -0.2 374,100 - DZA65_RS01720 0.39 -0.5 374,100 - DZA65_RS01720 0.39 +2.2 374,100 - DZA65_RS01720 0.39 -2.5 374,145 - DZA65_RS01720 0.50 +0.7 374,177 + DZA65_RS01720 0.57 -2.2 374,178 - DZA65_RS01720 0.57 -0.6 374,178 - DZA65_RS01720 0.57 +0.1 374,180 + DZA65_RS01720 0.58 +0.6 374,180 + DZA65_RS01720 0.58 -0.0 374,181 - DZA65_RS01720 0.58 +0.6 374,181 - DZA65_RS01720 0.58 +0.7 374,231 - DZA65_RS01720 0.70 +0.2 374,241 - DZA65_RS01720 0.72 -0.3 374,241 - DZA65_RS01720 0.72 -0.2 374,262 + DZA65_RS01720 0.77 +0.2 374,262 + DZA65_RS01720 0.77 -0.8 374,262 + DZA65_RS01720 0.77 -1.1 374,263 - DZA65_RS01720 0.77 -0.0 374,263 - DZA65_RS01720 0.77 -0.4 374,263 - DZA65_RS01720 0.77 +1.1 374,263 - DZA65_RS01720 0.77 +1.1 374,263 - DZA65_RS01720 0.77 -1.2 374,319 - -0.5 374,357 + +0.2 374,357 + -2.3 374,357 + -2.3 374,357 + -0.5 374,357 + +0.2 374,357 + +1.0 374,357 + +0.1 374,357 + -0.5 374,357 + -0.2 374,357 + -1.3 374,357 + -2.2 374,357 + +0.6 374,358 - -0.3 374,358 - +0.7 374,358 - +0.2 374,358 - -0.6 374,358 - -1.8 374,358 - -0.8 374,358 - -0.3 374,358 - -1.4 374,358 - -1.8 374,358 - -2.8 374,358 - -0.9 374,361 + -0.0 374,361 + -0.2 374,361 + -2.7 374,361 + -0.9 374,361 + -0.6 374,361 + +0.8 374,362 - -0.7 374,362 - -0.1 374,362 - +0.2 374,362 - -1.1 374,362 - -0.0 374,362 - +1.0 374,362 - -1.2 374,362 - +1.1 374,363 + -0.3 374,363 + -0.6 374,363 + +0.9 374,363 + +0.3 374,372 + +0.7 374,372 + -0.1 374,372 + +0.5 374,373 - -0.2 374,373 - +1.0 374,449 + -0.9 374,449 + -0.4 374,449 + +0.4 374,450 - -1.0 374,450 - +1.0 374,509 + +0.1 374,510 - +0.4 374,513 + +0.1 374,514 - -0.6 374,514 - -0.3 374,514 - +0.7 374,521 + -1.0 374,521 + -0.7 374,521 + +0.2 374,521 + +0.8 374,521 + -0.4 374,521 + +0.1 374,521 + -0.4 374,521 + +1.0 374,521 + +1.2 374,521 + +0.2 374,521 + -2.3 374,521 + -0.2 374,521 + -0.0 374,521 + +0.4 374,521 + -0.4 374,522 - -1.8 374,522 - +0.4 374,522 - -1.2 374,522 - +0.4 374,522 - +0.5 374,522 - +1.1 374,522 - +0.4 374,522 - +0.5 374,522 - -1.3 374,522 - +0.8 374,522 - -0.0 374,522 - -0.3 374,522 - -0.3 374,522 - +0.8 374,562 + -2.2 374,562 + -0.0 374,562 + -0.2 374,563 - +0.6 374,563 - -0.6 374,623 + -0.9 374,623 + +0.9 374,623 + +0.4 374,623 + +0.7 374,624 - -0.4 374,675 + DZA65_RS01725 0.13 -2.7 374,675 + DZA65_RS01725 0.13 +2.0 374,675 + DZA65_RS01725 0.13 -0.6 374,675 + DZA65_RS01725 0.13 -1.3 374,675 + DZA65_RS01725 0.13 -0.7 374,676 - DZA65_RS01725 0.13 +1.3 374,676 - DZA65_RS01725 0.13 +0.2 374,676 - DZA65_RS01725 0.13 -0.3 374,676 - DZA65_RS01725 0.13 +0.4 374,676 - DZA65_RS01725 0.13 -0.0 374,679 + DZA65_RS01725 0.14 +0.8 374,679 + DZA65_RS01725 0.14 -1.7 374,679 + DZA65_RS01725 0.14 -0.4 374,680 - DZA65_RS01725 0.14 -0.3 374,680 - DZA65_RS01725 0.14 +0.9 374,680 - DZA65_RS01725 0.14 +1.1 374,680 - DZA65_RS01725 0.14 +0.8 374,771 + DZA65_RS01725 0.25 +1.2 374,771 + DZA65_RS01725 0.25 -1.0 374,772 - DZA65_RS01725 0.25 +0.3 374,784 + DZA65_RS01725 0.26 -0.0 374,784 + DZA65_RS01725 0.26 +0.5 374,784 + DZA65_RS01725 0.26 -0.8 374,784 + DZA65_RS01725 0.26 -0.9 374,784 + DZA65_RS01725 0.26 -1.0 374,785 - DZA65_RS01725 0.27 +1.2 374,785 - DZA65_RS01725 0.27 +1.0 374,785 - DZA65_RS01725 0.27 +1.2 374,785 - DZA65_RS01725 0.27 -1.3 374,785 - DZA65_RS01725 0.27 +0.2 374,785 - DZA65_RS01725 0.27 -0.9 374,785 - DZA65_RS01725 0.27 -0.6 374,785 - DZA65_RS01725 0.27 -0.8 374,804 + DZA65_RS01725 0.29 +0.7 374,805 - DZA65_RS01725 0.29 +1.0
Or see this region's nucleotide sequence