Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00885 and DZA65_RS00890 are separated by 260 nucleotides DZA65_RS00890 and DZA65_RS00895 are separated by 62 nucleotides
DZA65_RS00885: DZA65_RS00885 - uridine phosphorylase, at 198,259 to 199,020
_RS00885
DZA65_RS00890: DZA65_RS00890 - tyrosine-protein phosphatase, at 199,281 to 200,063
_RS00890
DZA65_RS00895: DZA65_RS00895 - phosphoenolpyruvate carboxylase, at 200,126 to 202,765
_RS00895
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 198.439 kb on - strand, within DZA65_RS00885 at 198.471 kb on + strand, within DZA65_RS00885 at 198.472 kb on - strand, within DZA65_RS00885 at 198.485 kb on + strand, within DZA65_RS00885 at 198.485 kb on + strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.660 kb on + strand, within DZA65_RS00885 at 198.660 kb on + strand, within DZA65_RS00885 at 198.661 kb on - strand, within DZA65_RS00885 at 198.661 kb on - strand, within DZA65_RS00885 at 198.732 kb on + strand, within DZA65_RS00885 at 198.758 kb on - strand, within DZA65_RS00885 at 198.758 kb on - strand at 198.766 kb on + strand, within DZA65_RS00885 at 198.767 kb on - strand, within DZA65_RS00885 at 198.767 kb on - strand, within DZA65_RS00885 at 198.801 kb on + strand, within DZA65_RS00885 at 198.801 kb on + strand, within DZA65_RS00885 at 198.802 kb on - strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.921 kb on + strand, within DZA65_RS00885 at 198.921 kb on + strand, within DZA65_RS00885 at 198.943 kb on - strand, within DZA65_RS00885 at 198.948 kb on + strand at 198.948 kb on + strand at 198.949 kb on - strand at 199.008 kb on - strand at 199.087 kb on + strand at 199.087 kb on + strand at 199.088 kb on - strand at 199.088 kb on - strand at 199.137 kb on + strand at 199.138 kb on - strand at 199.138 kb on - strand at 199.138 kb on - strand at 199.143 kb on + strand at 199.143 kb on + strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.164 kb on + strand at 199.165 kb on - strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.199 kb on + strand at 199.199 kb on + strand at 199.199 kb on + strand at 199.199 kb on + strand at 199.200 kb on - strand at 199.200 kb on - strand at 199.200 kb on - strand at 199.200 kb on - strand at 199.218 kb on + strand at 199.219 kb on - strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.237 kb on - strand at 199.251 kb on - strand at 199.251 kb on - strand at 199.251 kb on - strand at 199.264 kb on + strand at 199.268 kb on + strand at 199.268 kb on + strand at 199.268 kb on + strand at 199.268 kb on + strand at 199.269 kb on + strand at 199.269 kb on - strand at 199.269 kb on - strand at 199.280 kb on + strand at 199.280 kb on + strand at 199.281 kb on - strand at 199.298 kb on - strand at 199.298 kb on - strand at 199.349 kb on - strand at 199.349 kb on - strand at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.454 kb on + strand, within DZA65_RS00890 at 199.454 kb on + strand, within DZA65_RS00890 at 199.537 kb on - strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.657 kb on + strand, within DZA65_RS00890 at 199.677 kb on + strand, within DZA65_RS00890 at 199.754 kb on + strand, within DZA65_RS00890 at 199.821 kb on + strand, within DZA65_RS00890 at 199.822 kb on - strand, within DZA65_RS00890 at 199.822 kb on - strand, within DZA65_RS00890 at 199.992 kb on - strand at 200.010 kb on + strand at 200.011 kb on - strand at 200.049 kb on - strand at 200.049 kb on - strand at 200.052 kb on + strand at 200.052 kb on + strand at 200.052 kb on + strand at 200.052 kb on + strand at 200.052 kb on + strand at 200.053 kb on - strand at 200.053 kb on - strand at 200.053 kb on - strand at 200.053 kb on - strand at 200.053 kb on - strand at 200.053 kb on - strand at 200.077 kb on + strand at 200.077 kb on + strand at 200.078 kb on - strand at 200.083 kb on - strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.098 kb on - strand at 200.098 kb on - strand at 200.098 kb on - strand at 200.098 kb on - strand at 200.186 kb on + strand at 200.186 kb on + strand at 200.186 kb on + strand at 200.187 kb on - strand at 200.243 kb on + strand at 200.243 kb on + strand at 200.243 kb on + strand at 200.244 kb on - strand at 200.244 kb on - strand at 200.244 kb on - strand at 200.262 kb on + strand at 200.262 kb on + strand at 200.263 kb on - strand at 200.263 kb on - strand at 200.326 kb on + strand at 200.421 kb on + strand, within DZA65_RS00895 at 200.421 kb on + strand, within DZA65_RS00895 at 200.422 kb on - strand, within DZA65_RS00895 at 200.422 kb on - strand, within DZA65_RS00895 at 200.424 kb on + strand, within DZA65_RS00895 at 200.424 kb on + strand, within DZA65_RS00895 at 200.425 kb on - strand, within DZA65_RS00895 at 200.425 kb on - strand, within DZA65_RS00895 at 200.470 kb on + strand, within DZA65_RS00895 at 200.471 kb on - strand, within DZA65_RS00895 at 200.471 kb on - strand, within DZA65_RS00895 at 200.471 kb on - strand, within DZA65_RS00895 at 200.725 kb on - strand, within DZA65_RS00895 at 200.725 kb on - strand, within DZA65_RS00895 at 200.725 kb on - strand, within DZA65_RS00895 at 200.754 kb on + strand, within DZA65_RS00895 at 200.754 kb on + strand, within DZA65_RS00895 at 200.755 kb on - strand, within DZA65_RS00895 at 200.755 kb on - strand, within DZA65_RS00895 at 200.755 kb on - strand, within DZA65_RS00895 at 200.763 kb on + strand, within DZA65_RS00895 at 200.763 kb on + strand, within DZA65_RS00895 at 200.764 kb on - strand, within DZA65_RS00895 at 200.764 kb on - strand, within DZA65_RS00895 at 200.764 kb on - strand, within DZA65_RS00895 at 200.764 kb on - strand, within DZA65_RS00895 at 200.764 kb on - strand, within DZA65_RS00895 at 200.842 kb on + strand, within DZA65_RS00895 at 200.842 kb on + strand, within DZA65_RS00895 at 200.843 kb on - strand, within DZA65_RS00895 at 200.865 kb on + strand, within DZA65_RS00895 at 200.865 kb on + strand, within DZA65_RS00895 at 200.865 kb on + strand, within DZA65_RS00895 at 200.865 kb on + strand, within DZA65_RS00895 at 200.865 kb on + strand, within DZA65_RS00895 at 200.866 kb on - strand, within DZA65_RS00895 at 200.866 kb on - strand, within DZA65_RS00895 at 201.054 kb on + strand, within DZA65_RS00895 at 201.054 kb on + strand, within DZA65_RS00895 at 201.054 kb on + strand, within DZA65_RS00895 at 201.055 kb on - strand, within DZA65_RS00895 at 201.055 kb on - strand, within DZA65_RS00895
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 198,439 - DZA65_RS00885 0.24 +0.7 198,471 + DZA65_RS00885 0.28 -0.5 198,472 - DZA65_RS00885 0.28 +0.7 198,485 + DZA65_RS00885 0.30 -2.4 198,485 + DZA65_RS00885 0.30 -1.5 198,514 - DZA65_RS00885 0.33 +1.4 198,514 - DZA65_RS00885 0.33 +0.6 198,514 - DZA65_RS00885 0.33 +0.6 198,660 + DZA65_RS00885 0.53 -0.3 198,660 + DZA65_RS00885 0.53 +0.9 198,661 - DZA65_RS00885 0.53 -1.5 198,661 - DZA65_RS00885 0.53 +2.1 198,732 + DZA65_RS00885 0.62 +0.2 198,758 - DZA65_RS00885 0.65 -0.0 198,758 - +1.1 198,766 + DZA65_RS00885 0.67 -0.2 198,767 - DZA65_RS00885 0.67 -1.1 198,767 - DZA65_RS00885 0.67 +0.6 198,801 + DZA65_RS00885 0.71 -0.5 198,801 + DZA65_RS00885 0.71 +0.3 198,802 - DZA65_RS00885 0.71 -1.9 198,835 + DZA65_RS00885 0.76 +0.4 198,835 + DZA65_RS00885 0.76 -0.1 198,835 + DZA65_RS00885 0.76 +1.0 198,836 - DZA65_RS00885 0.76 -2.3 198,836 - DZA65_RS00885 0.76 -0.6 198,836 - DZA65_RS00885 0.76 -0.3 198,921 + DZA65_RS00885 0.87 +1.4 198,921 + DZA65_RS00885 0.87 -0.3 198,943 - DZA65_RS00885 0.90 -0.4 198,948 + +1.1 198,948 + +0.6 198,949 - +0.6 199,008 - +0.6 199,087 + -1.7 199,087 + -0.2 199,088 - +0.2 199,088 - +1.6 199,137 + -0.3 199,138 - -1.3 199,138 - +1.1 199,138 - -1.7 199,143 + +1.1 199,143 + -1.7 199,144 - +1.8 199,144 - +0.4 199,144 - +1.3 199,144 - +1.1 199,144 - +1.1 199,164 + -0.7 199,165 - +0.6 199,167 + -0.3 199,167 + +1.5 199,167 + +0.2 199,167 + +0.2 199,167 + -1.4 199,168 - +1.3 199,168 - +1.7 199,168 - +1.1 199,168 - +0.5 199,168 - +0.9 199,168 - +1.5 199,168 - +0.1 199,168 - -0.5 199,168 - +0.6 199,199 + -1.5 199,199 + -0.5 199,199 + +0.1 199,199 + -0.5 199,200 - -1.3 199,200 - +0.8 199,200 - +1.2 199,200 - +0.5 199,218 + -0.3 199,219 - -0.2 199,222 + -2.5 199,222 + -1.9 199,222 + -0.9 199,222 + -1.3 199,222 + +0.9 199,222 + +1.8 199,222 + -0.7 199,222 + +1.1 199,223 - +1.5 199,223 - +1.1 199,223 - +0.9 199,223 - -0.1 199,223 - -0.2 199,223 - -0.1 199,223 - +0.8 199,223 - +1.0 199,223 - -1.2 199,223 - +1.3 199,223 - +1.3 199,237 - +0.3 199,251 - +1.6 199,251 - +0.8 199,251 - -0.5 199,264 + -1.3 199,268 + -2.3 199,268 + -0.4 199,268 + +0.6 199,268 + -0.3 199,269 + +1.5 199,269 - +1.1 199,269 - -1.5 199,280 + -0.9 199,280 + -0.5 199,281 - +0.2 199,298 - +1.1 199,298 - +0.6 199,349 - -2.4 199,349 - -1.3 199,423 + DZA65_RS00890 0.18 -2.1 199,423 + DZA65_RS00890 0.18 +0.6 199,423 + DZA65_RS00890 0.18 +1.2 199,423 + DZA65_RS00890 0.18 +0.7 199,423 + DZA65_RS00890 0.18 -0.3 199,423 + DZA65_RS00890 0.18 +0.5 199,424 - DZA65_RS00890 0.18 +1.1 199,424 - DZA65_RS00890 0.18 +1.5 199,424 - DZA65_RS00890 0.18 +0.3 199,424 - DZA65_RS00890 0.18 -0.9 199,454 + DZA65_RS00890 0.22 +2.3 199,454 + DZA65_RS00890 0.22 -0.1 199,537 - DZA65_RS00890 0.33 -0.9 199,634 + DZA65_RS00890 0.45 -0.5 199,634 + DZA65_RS00890 0.45 +1.6 199,634 + DZA65_RS00890 0.45 -0.1 199,634 + DZA65_RS00890 0.45 -0.4 199,635 - DZA65_RS00890 0.45 -0.2 199,635 - DZA65_RS00890 0.45 +1.3 199,635 - DZA65_RS00890 0.45 -0.1 199,635 - DZA65_RS00890 0.45 +2.1 199,635 - DZA65_RS00890 0.45 -0.9 199,657 + DZA65_RS00890 0.48 -1.1 199,677 + DZA65_RS00890 0.51 -0.3 199,754 + DZA65_RS00890 0.60 -0.5 199,821 + DZA65_RS00890 0.69 -0.4 199,822 - DZA65_RS00890 0.69 +0.3 199,822 - DZA65_RS00890 0.69 +1.2 199,992 - +0.8 200,010 + -0.6 200,011 - -0.4 200,049 - +0.6 200,049 - +0.5 200,052 + -0.9 200,052 + +0.8 200,052 + -1.1 200,052 + +1.1 200,052 + -0.9 200,053 - +0.3 200,053 - +1.1 200,053 - -0.5 200,053 - -0.2 200,053 - +0.7 200,053 - +0.3 200,077 + -0.7 200,077 + +0.3 200,078 - -0.7 200,083 - -1.3 200,097 + -1.9 200,097 + -0.5 200,097 + -0.5 200,097 + +1.6 200,097 + -0.3 200,097 + -0.4 200,097 + +0.2 200,097 + -0.7 200,097 + +0.7 200,098 - +0.5 200,098 - +0.1 200,098 - +0.8 200,098 - +0.8 200,186 + -1.3 200,186 + -0.1 200,186 + -1.3 200,187 - +1.3 200,243 + -0.7 200,243 + +0.1 200,243 + -1.6 200,244 - +1.4 200,244 - +0.1 200,244 - -0.1 200,262 + -1.7 200,262 + +1.1 200,263 - +0.5 200,263 - +0.8 200,326 + -0.7 200,421 + DZA65_RS00895 0.11 +2.1 200,421 + DZA65_RS00895 0.11 +2.5 200,422 - DZA65_RS00895 0.11 +1.6 200,422 - DZA65_RS00895 0.11 +1.3 200,424 + DZA65_RS00895 0.11 -0.3 200,424 + DZA65_RS00895 0.11 +0.1 200,425 - DZA65_RS00895 0.11 -2.3 200,425 - DZA65_RS00895 0.11 +0.3 200,470 + DZA65_RS00895 0.13 +0.1 200,471 - DZA65_RS00895 0.13 +0.7 200,471 - DZA65_RS00895 0.13 +0.5 200,471 - DZA65_RS00895 0.13 +1.6 200,725 - DZA65_RS00895 0.23 +0.3 200,725 - DZA65_RS00895 0.23 -1.1 200,725 - DZA65_RS00895 0.23 +1.7 200,754 + DZA65_RS00895 0.24 -1.3 200,754 + DZA65_RS00895 0.24 -0.7 200,755 - DZA65_RS00895 0.24 +0.8 200,755 - DZA65_RS00895 0.24 +0.9 200,755 - DZA65_RS00895 0.24 +0.5 200,763 + DZA65_RS00895 0.24 +1.5 200,763 + DZA65_RS00895 0.24 -2.1 200,764 - DZA65_RS00895 0.24 -0.3 200,764 - DZA65_RS00895 0.24 -1.4 200,764 - DZA65_RS00895 0.24 -1.2 200,764 - DZA65_RS00895 0.24 -0.4 200,764 - DZA65_RS00895 0.24 -1.9 200,842 + DZA65_RS00895 0.27 -0.5 200,842 + DZA65_RS00895 0.27 -0.5 200,843 - DZA65_RS00895 0.27 -1.1 200,865 + DZA65_RS00895 0.28 +1.1 200,865 + DZA65_RS00895 0.28 +0.3 200,865 + DZA65_RS00895 0.28 +0.3 200,865 + DZA65_RS00895 0.28 -1.2 200,865 + DZA65_RS00895 0.28 +0.1 200,866 - DZA65_RS00895 0.28 +0.6 200,866 - DZA65_RS00895 0.28 +0.6 201,054 + DZA65_RS00895 0.35 -0.4 201,054 + DZA65_RS00895 0.35 +0.4 201,054 + DZA65_RS00895 0.35 +0.7 201,055 - DZA65_RS00895 0.35 +0.8 201,055 - DZA65_RS00895 0.35 -1.7
Or see this region's nucleotide sequence