Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00755 and DZA65_RS00760 are separated by 238 nucleotides DZA65_RS00760 and DZA65_RS00765 are separated by 11 nucleotides DZA65_RS00765 and DZA65_RS00770 are separated by 75 nucleotides DZA65_RS00770 and DZA65_RS00775 are separated by 60 nucleotides DZA65_RS00775 and DZA65_RS00780 overlap by 11 nucleotides
DZA65_RS00755: DZA65_RS00755 - JAB domain-containing protein, at 171,916 to 172,581
_RS00755
DZA65_RS00760: DZA65_RS00760 - 50S ribosomal protein L28, at 172,820 to 173,056
_RS00760
DZA65_RS00765: DZA65_RS00765 - 50S ribosomal protein L33, at 173,068 to 173,235
_RS00765
DZA65_RS00770: DZA65_RS00770 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 173,311 to 174,120
_RS00770
DZA65_RS00775: DZA65_RS00775 - pantetheine-phosphate adenylyltransferase, at 174,181 to 174,660
_RS00775
DZA65_RS00780: DZA65_RS00780 - glycosyltransferase family 2 protein, at 174,650 to 175,441
_RS00780
Position (kb) 173
174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 172.351 kb on - strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.425 kb on + strand, within DZA65_RS00755 at 172.425 kb on + strand, within DZA65_RS00755 at 172.426 kb on - strand, within DZA65_RS00755 at 172.426 kb on - strand, within DZA65_RS00755 at 172.426 kb on - strand, within DZA65_RS00755 at 172.550 kb on - strand at 172.550 kb on - strand at 172.587 kb on - strand at 172.587 kb on - strand at 173.277 kb on + strand at 173.373 kb on + strand at 173.373 kb on + strand at 173.374 kb on - strand at 173.383 kb on + strand at 173.383 kb on + strand at 173.384 kb on - strand at 173.384 kb on - strand at 173.386 kb on - strand at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.513 kb on + strand, within DZA65_RS00770 at 173.527 kb on + strand, within DZA65_RS00770 at 173.560 kb on + strand, within DZA65_RS00770 at 173.561 kb on - strand, within DZA65_RS00770 at 173.561 kb on - strand, within DZA65_RS00770 at 173.610 kb on + strand, within DZA65_RS00770 at 173.610 kb on + strand, within DZA65_RS00770 at 173.623 kb on + strand, within DZA65_RS00770 at 173.623 kb on + strand, within DZA65_RS00770 at 173.626 kb on - strand, within DZA65_RS00770 at 173.626 kb on - strand, within DZA65_RS00770 at 173.785 kb on - strand, within DZA65_RS00770 at 173.811 kb on - strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.822 kb on - strand, within DZA65_RS00770 at 173.822 kb on - strand, within DZA65_RS00770 at 173.822 kb on - strand, within DZA65_RS00770 at 173.822 kb on - strand, within DZA65_RS00770 at 173.906 kb on + strand, within DZA65_RS00770 at 173.906 kb on + strand, within DZA65_RS00770 at 173.906 kb on + strand, within DZA65_RS00770 at 173.906 kb on + strand, within DZA65_RS00770 at 173.906 kb on + strand, within DZA65_RS00770 at 173.906 kb on + strand, within DZA65_RS00770 at 173.907 kb on - strand, within DZA65_RS00770 at 173.907 kb on - strand, within DZA65_RS00770 at 173.907 kb on - strand, within DZA65_RS00770 at 173.907 kb on - strand, within DZA65_RS00770 at 173.907 kb on - strand, within DZA65_RS00770 at 173.924 kb on + strand, within DZA65_RS00770 at 173.924 kb on + strand, within DZA65_RS00770 at 173.925 kb on - strand, within DZA65_RS00770 at 173.925 kb on - strand, within DZA65_RS00770 at 173.925 kb on - strand, within DZA65_RS00770 at 173.925 kb on - strand, within DZA65_RS00770 at 174.012 kb on - strand, within DZA65_RS00770 at 174.012 kb on - strand, within DZA65_RS00770 at 174.019 kb on + strand, within DZA65_RS00770 at 174.019 kb on + strand, within DZA65_RS00770 at 174.019 kb on + strand, within DZA65_RS00770 at 174.019 kb on + strand, within DZA65_RS00770 at 174.020 kb on - strand, within DZA65_RS00770 at 174.020 kb on - strand, within DZA65_RS00770 at 174.102 kb on + strand at 174.103 kb on - strand at 174.118 kb on + strand at 174.118 kb on + strand at 174.119 kb on - strand at 174.119 kb on - strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.142 kb on - strand at 174.142 kb on - strand at 174.142 kb on - strand at 174.161 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 172,351 - DZA65_RS00755 0.65 -0.1 172,361 + DZA65_RS00755 0.67 +1.1 172,361 + DZA65_RS00755 0.67 +1.7 172,361 + DZA65_RS00755 0.67 -0.7 172,361 + DZA65_RS00755 0.67 +1.2 172,361 + DZA65_RS00755 0.67 -0.0 172,361 + DZA65_RS00755 0.67 +1.1 172,362 - DZA65_RS00755 0.67 -1.8 172,362 - DZA65_RS00755 0.67 -0.0 172,362 - DZA65_RS00755 0.67 -2.1 172,362 - DZA65_RS00755 0.67 -1.3 172,425 + DZA65_RS00755 0.76 -0.5 172,425 + DZA65_RS00755 0.76 -1.3 172,426 - DZA65_RS00755 0.77 +0.9 172,426 - DZA65_RS00755 0.77 -0.7 172,426 - DZA65_RS00755 0.77 +0.6 172,550 - -0.6 172,550 - -1.0 172,587 - +0.5 172,587 - +0.2 173,277 + -1.5 173,373 + -0.2 173,373 + -2.2 173,374 - -1.6 173,383 + -1.3 173,383 + +0.6 173,384 - -2.1 173,384 - +0.0 173,386 - -0.5 173,482 + DZA65_RS00770 0.21 -1.5 173,482 + DZA65_RS00770 0.21 +1.6 173,482 + DZA65_RS00770 0.21 +2.6 173,482 + DZA65_RS00770 0.21 +0.4 173,482 + DZA65_RS00770 0.21 -0.3 173,513 + DZA65_RS00770 0.25 -2.5 173,527 + DZA65_RS00770 0.27 +1.5 173,560 + DZA65_RS00770 0.31 +0.7 173,561 - DZA65_RS00770 0.31 -0.5 173,561 - DZA65_RS00770 0.31 -1.5 173,610 + DZA65_RS00770 0.37 +1.1 173,610 + DZA65_RS00770 0.37 +0.7 173,623 + DZA65_RS00770 0.39 -1.6 173,623 + DZA65_RS00770 0.39 +1.7 173,626 - DZA65_RS00770 0.39 +1.3 173,626 - DZA65_RS00770 0.39 -1.1 173,785 - DZA65_RS00770 0.59 -0.5 173,811 - DZA65_RS00770 0.62 +0.5 173,821 + DZA65_RS00770 0.63 +0.7 173,821 + DZA65_RS00770 0.63 +0.8 173,821 + DZA65_RS00770 0.63 +0.6 173,821 + DZA65_RS00770 0.63 +0.7 173,821 + DZA65_RS00770 0.63 -0.8 173,821 + DZA65_RS00770 0.63 +1.6 173,821 + DZA65_RS00770 0.63 +0.1 173,821 + DZA65_RS00770 0.63 +0.6 173,821 + DZA65_RS00770 0.63 -0.3 173,822 - DZA65_RS00770 0.63 +0.6 173,822 - DZA65_RS00770 0.63 -1.3 173,822 - DZA65_RS00770 0.63 +0.1 173,822 - DZA65_RS00770 0.63 -1.3 173,906 + DZA65_RS00770 0.73 +0.9 173,906 + DZA65_RS00770 0.73 +1.3 173,906 + DZA65_RS00770 0.73 -1.2 173,906 + DZA65_RS00770 0.73 -0.4 173,906 + DZA65_RS00770 0.73 -1.3 173,906 + DZA65_RS00770 0.73 +1.3 173,907 - DZA65_RS00770 0.74 +0.7 173,907 - DZA65_RS00770 0.74 -0.1 173,907 - DZA65_RS00770 0.74 -0.1 173,907 - DZA65_RS00770 0.74 +0.1 173,907 - DZA65_RS00770 0.74 -1.1 173,924 + DZA65_RS00770 0.76 -3.3 173,924 + DZA65_RS00770 0.76 -0.5 173,925 - DZA65_RS00770 0.76 +0.7 173,925 - DZA65_RS00770 0.76 -1.4 173,925 - DZA65_RS00770 0.76 +0.5 173,925 - DZA65_RS00770 0.76 +0.9 174,012 - DZA65_RS00770 0.87 -2.4 174,012 - DZA65_RS00770 0.87 +0.1 174,019 + DZA65_RS00770 0.87 +0.1 174,019 + DZA65_RS00770 0.87 -0.5 174,019 + DZA65_RS00770 0.87 -0.6 174,019 + DZA65_RS00770 0.87 +0.3 174,020 - DZA65_RS00770 0.88 +0.5 174,020 - DZA65_RS00770 0.88 +1.1 174,102 + -1.3 174,103 - +1.5 174,118 + +0.3 174,118 + +1.4 174,119 - +0.4 174,119 - -0.7 174,141 + +1.1 174,141 + +0.7 174,141 + -1.1 174,142 - -2.6 174,142 - +0.4 174,142 - -0.1 174,161 + -1.0
Or see this region's nucleotide sequence