Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00685 and DZA65_RS00690 are separated by 11 nucleotides DZA65_RS00690 and DZA65_RS00695 are separated by 8 nucleotides DZA65_RS00695 and DZA65_RS00700 are separated by 17 nucleotides
DZA65_RS00685: DZA65_RS00685 - P1 family peptidase, at 158,014 to 159,069
_RS00685
DZA65_RS00690: DZA65_RS00690 - ABC transporter permease subunit, at 159,081 to 159,980
_RS00690
DZA65_RS00695: DZA65_RS00695 - ABC transporter permease subunit, at 159,989 to 160,909
_RS00695
DZA65_RS00700: DZA65_RS00700 - glutathione ABC transporter substrate-binding protein, at 160,927 to 162,483
_RS00700
Position (kb) 159
160 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 158.326 kb on - strand, within DZA65_RS00685 at 158.626 kb on - strand, within DZA65_RS00685 at 158.632 kb on - strand, within DZA65_RS00685 at 158.731 kb on - strand, within DZA65_RS00685 at 158.803 kb on + strand, within DZA65_RS00685 at 158.865 kb on + strand, within DZA65_RS00685 at 158.865 kb on + strand, within DZA65_RS00685 at 158.931 kb on + strand, within DZA65_RS00685 at 158.931 kb on + strand, within DZA65_RS00685 at 158.931 kb on + strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.957 kb on - strand, within DZA65_RS00685 at 159.059 kb on + strand at 159.060 kb on - strand at 159.082 kb on + strand at 159.082 kb on + strand at 159.083 kb on - strand at 159.083 kb on - strand at 159.158 kb on + strand at 159.227 kb on + strand, within DZA65_RS00690 at 159.227 kb on + strand, within DZA65_RS00690 at 159.228 kb on - strand, within DZA65_RS00690 at 159.228 kb on - strand at 159.228 kb on - strand, within DZA65_RS00690 at 159.228 kb on - strand, within DZA65_RS00690 at 159.228 kb on - strand, within DZA65_RS00690 at 159.228 kb on - strand, within DZA65_RS00690 at 159.322 kb on + strand, within DZA65_RS00690 at 159.322 kb on + strand, within DZA65_RS00690 at 159.322 kb on + strand, within DZA65_RS00690 at 159.323 kb on - strand, within DZA65_RS00690 at 159.323 kb on - strand, within DZA65_RS00690 at 159.323 kb on - strand, within DZA65_RS00690 at 159.323 kb on - strand, within DZA65_RS00690 at 159.357 kb on - strand, within DZA65_RS00690 at 159.412 kb on + strand, within DZA65_RS00690 at 159.413 kb on - strand, within DZA65_RS00690 at 159.501 kb on - strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.610 kb on + strand, within DZA65_RS00690 at 159.610 kb on + strand, within DZA65_RS00690 at 159.613 kb on + strand, within DZA65_RS00690 at 159.613 kb on + strand, within DZA65_RS00690 at 159.613 kb on + strand, within DZA65_RS00690 at 159.613 kb on + strand, within DZA65_RS00690 at 159.614 kb on - strand, within DZA65_RS00690 at 159.614 kb on - strand, within DZA65_RS00690 at 159.650 kb on + strand, within DZA65_RS00690 at 159.679 kb on + strand, within DZA65_RS00690 at 159.679 kb on + strand, within DZA65_RS00690 at 159.679 kb on + strand, within DZA65_RS00690 at 159.680 kb on - strand, within DZA65_RS00690 at 159.680 kb on - strand, within DZA65_RS00690 at 159.680 kb on - strand, within DZA65_RS00690 at 159.680 kb on - strand, within DZA65_RS00690 at 159.700 kb on + strand, within DZA65_RS00690 at 159.701 kb on - strand, within DZA65_RS00690 at 159.701 kb on - strand, within DZA65_RS00690 at 159.701 kb on - strand, within DZA65_RS00690 at 159.704 kb on + strand, within DZA65_RS00690 at 159.704 kb on + strand, within DZA65_RS00690 at 159.704 kb on + strand, within DZA65_RS00690 at 159.890 kb on + strand, within DZA65_RS00690 at 159.990 kb on + strand at 159.995 kb on + strand at 159.995 kb on + strand at 159.995 kb on + strand at 159.996 kb on - strand at 159.996 kb on - strand at 160.023 kb on + strand at 160.023 kb on + strand at 160.024 kb on - strand at 160.024 kb on - strand at 160.024 kb on - strand at 160.045 kb on + strand at 160.045 kb on + strand at 160.045 kb on + strand at 160.045 kb on + strand at 160.045 kb on + strand at 160.046 kb on - strand at 160.121 kb on + strand, within DZA65_RS00695 at 160.121 kb on + strand, within DZA65_RS00695 at 160.121 kb on + strand, within DZA65_RS00695 at 160.121 kb on + strand, within DZA65_RS00695 at 160.121 kb on + strand, within DZA65_RS00695 at 160.121 kb on + strand, within DZA65_RS00695 at 160.121 kb on + strand, within DZA65_RS00695 at 160.121 kb on + strand, within DZA65_RS00695 at 160.121 kb on + strand, within DZA65_RS00695 at 160.121 kb on + strand, within DZA65_RS00695 at 160.121 kb on + strand, within DZA65_RS00695 at 160.122 kb on - strand, within DZA65_RS00695 at 160.122 kb on - strand, within DZA65_RS00695 at 160.122 kb on - strand, within DZA65_RS00695 at 160.122 kb on - strand, within DZA65_RS00695 at 160.122 kb on - strand, within DZA65_RS00695 at 160.122 kb on - strand, within DZA65_RS00695 at 160.122 kb on - strand, within DZA65_RS00695 at 160.122 kb on - strand, within DZA65_RS00695 at 160.299 kb on + strand, within DZA65_RS00695 at 160.299 kb on + strand, within DZA65_RS00695 at 160.299 kb on + strand, within DZA65_RS00695 at 160.299 kb on + strand, within DZA65_RS00695 at 160.299 kb on + strand, within DZA65_RS00695 at 160.299 kb on + strand, within DZA65_RS00695 at 160.300 kb on - strand, within DZA65_RS00695 at 160.300 kb on - strand, within DZA65_RS00695 at 160.337 kb on - strand, within DZA65_RS00695 at 160.393 kb on + strand, within DZA65_RS00695 at 160.410 kb on + strand, within DZA65_RS00695 at 160.613 kb on + strand, within DZA65_RS00695 at 160.613 kb on + strand, within DZA65_RS00695 at 160.624 kb on + strand, within DZA65_RS00695 at 160.668 kb on + strand, within DZA65_RS00695 at 160.669 kb on - strand, within DZA65_RS00695 at 160.691 kb on + strand, within DZA65_RS00695 at 160.692 kb on - strand, within DZA65_RS00695 at 160.717 kb on - strand, within DZA65_RS00695 at 160.717 kb on - strand, within DZA65_RS00695 at 160.797 kb on + strand, within DZA65_RS00695 at 160.797 kb on + strand, within DZA65_RS00695 at 160.797 kb on + strand, within DZA65_RS00695 at 160.797 kb on + strand, within DZA65_RS00695 at 160.798 kb on - strand, within DZA65_RS00695 at 160.798 kb on - strand, within DZA65_RS00695 at 160.798 kb on - strand, within DZA65_RS00695 at 160.897 kb on + strand at 160.897 kb on + strand at 160.897 kb on + strand at 160.898 kb on - strand at 160.898 kb on - strand at 160.898 kb on - strand at 160.899 kb on + strand at 160.899 kb on + strand at 160.899 kb on + strand at 160.899 kb on + strand at 160.899 kb on + strand at 160.899 kb on + strand at 160.900 kb on - strand at 160.900 kb on - strand at 160.900 kb on - strand at 160.900 kb on - strand at 160.900 kb on - strand at 160.900 kb on - strand at 160.900 kb on - strand at 160.928 kb on + strand at 160.929 kb on - strand at 160.929 kb on - strand at 160.929 kb on - strand at 160.929 kb on - strand at 160.929 kb on - strand at 160.976 kb on + strand at 160.976 kb on + strand at 160.976 kb on + strand at 160.976 kb on + strand at 160.976 kb on + strand at 160.977 kb on - strand at 160.977 kb on - strand at 160.977 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 158,326 - DZA65_RS00685 0.30 +0.3 158,626 - DZA65_RS00685 0.58 +1.5 158,632 - DZA65_RS00685 0.59 +0.2 158,731 - DZA65_RS00685 0.68 -0.1 158,803 + DZA65_RS00685 0.75 -0.1 158,865 + DZA65_RS00685 0.81 -0.2 158,865 + DZA65_RS00685 0.81 -0.9 158,931 + DZA65_RS00685 0.87 -1.4 158,931 + DZA65_RS00685 0.87 -1.4 158,931 + DZA65_RS00685 0.87 +0.6 158,932 - DZA65_RS00685 0.87 -0.2 158,932 - DZA65_RS00685 0.87 -2.4 158,932 - DZA65_RS00685 0.87 -0.3 158,932 - DZA65_RS00685 0.87 +1.3 158,957 - DZA65_RS00685 0.89 -1.6 159,059 + +2.4 159,060 - -2.1 159,082 + +0.3 159,082 + +0.2 159,083 - +1.1 159,083 - -0.9 159,158 + -0.3 159,227 + DZA65_RS00690 0.16 -1.7 159,227 + DZA65_RS00690 0.16 +0.1 159,228 - DZA65_RS00690 0.16 -0.9 159,228 - +0.1 159,228 - DZA65_RS00690 0.16 +1.3 159,228 - DZA65_RS00690 0.16 +1.1 159,228 - DZA65_RS00690 0.16 +0.6 159,228 - DZA65_RS00690 0.16 +0.7 159,322 + DZA65_RS00690 0.27 +1.8 159,322 + DZA65_RS00690 0.27 +0.8 159,322 + DZA65_RS00690 0.27 +0.5 159,323 - DZA65_RS00690 0.27 +0.1 159,323 - DZA65_RS00690 0.27 -0.4 159,323 - DZA65_RS00690 0.27 +1.0 159,323 - DZA65_RS00690 0.27 +1.3 159,357 - DZA65_RS00690 0.31 -1.1 159,412 + DZA65_RS00690 0.37 +0.3 159,413 - DZA65_RS00690 0.37 +0.9 159,501 - DZA65_RS00690 0.47 -1.7 159,567 + DZA65_RS00690 0.54 +1.1 159,567 + DZA65_RS00690 0.54 +0.5 159,567 + DZA65_RS00690 0.54 -0.2 159,567 + DZA65_RS00690 0.54 -0.6 159,567 + DZA65_RS00690 0.54 +2.7 159,567 + DZA65_RS00690 0.54 -1.2 159,567 + DZA65_RS00690 0.54 +0.1 159,567 + DZA65_RS00690 0.54 +0.1 159,568 - DZA65_RS00690 0.54 -0.3 159,568 - DZA65_RS00690 0.54 +1.6 159,568 - DZA65_RS00690 0.54 +0.1 159,568 - DZA65_RS00690 0.54 +0.2 159,568 - -0.5 159,568 - DZA65_RS00690 0.54 -0.5 159,568 - DZA65_RS00690 0.54 -1.4 159,568 - DZA65_RS00690 0.54 +0.9 159,568 - DZA65_RS00690 0.54 +0.2 159,568 - DZA65_RS00690 0.54 -0.8 159,610 + DZA65_RS00690 0.59 -0.4 159,610 + DZA65_RS00690 0.59 +1.5 159,613 + DZA65_RS00690 0.59 +0.2 159,613 + DZA65_RS00690 0.59 +0.1 159,613 + DZA65_RS00690 0.59 +0.5 159,613 + DZA65_RS00690 0.59 +0.5 159,614 - DZA65_RS00690 0.59 -0.9 159,614 - DZA65_RS00690 0.59 -1.7 159,650 + DZA65_RS00690 0.63 -0.0 159,679 + DZA65_RS00690 0.66 +0.2 159,679 + DZA65_RS00690 0.66 +3.3 159,679 + DZA65_RS00690 0.66 +0.5 159,680 - DZA65_RS00690 0.67 -0.2 159,680 - DZA65_RS00690 0.67 -0.4 159,680 - DZA65_RS00690 0.67 -0.2 159,680 - DZA65_RS00690 0.67 -0.2 159,700 + DZA65_RS00690 0.69 -1.1 159,701 - DZA65_RS00690 0.69 +0.5 159,701 - DZA65_RS00690 0.69 +0.1 159,701 - DZA65_RS00690 0.69 -1.5 159,704 + DZA65_RS00690 0.69 -1.5 159,704 + DZA65_RS00690 0.69 -1.5 159,704 + DZA65_RS00690 0.69 +0.9 159,890 + DZA65_RS00690 0.90 -0.1 159,990 + +0.2 159,995 + -1.4 159,995 + -0.4 159,995 + -0.1 159,996 - +0.2 159,996 - +1.4 160,023 + +0.4 160,023 + -0.2 160,024 - +0.1 160,024 - +0.1 160,024 - -1.7 160,045 + -0.3 160,045 + -1.5 160,045 + -1.0 160,045 + +1.7 160,045 + +0.4 160,046 - -0.9 160,121 + DZA65_RS00695 0.14 +0.4 160,121 + DZA65_RS00695 0.14 +0.9 160,121 + DZA65_RS00695 0.14 +0.1 160,121 + DZA65_RS00695 0.14 -1.7 160,121 + DZA65_RS00695 0.14 +0.9 160,121 + DZA65_RS00695 0.14 +1.2 160,121 + DZA65_RS00695 0.14 -0.7 160,121 + DZA65_RS00695 0.14 +0.1 160,121 + DZA65_RS00695 0.14 -0.1 160,121 + DZA65_RS00695 0.14 -0.2 160,121 + DZA65_RS00695 0.14 -0.8 160,122 - DZA65_RS00695 0.14 +3.7 160,122 - DZA65_RS00695 0.14 +0.1 160,122 - DZA65_RS00695 0.14 +0.6 160,122 - DZA65_RS00695 0.14 -1.9 160,122 - DZA65_RS00695 0.14 +0.6 160,122 - DZA65_RS00695 0.14 +0.5 160,122 - DZA65_RS00695 0.14 +0.9 160,122 - DZA65_RS00695 0.14 -1.9 160,299 + DZA65_RS00695 0.34 +2.3 160,299 + DZA65_RS00695 0.34 +0.2 160,299 + DZA65_RS00695 0.34 +0.3 160,299 + DZA65_RS00695 0.34 -0.2 160,299 + DZA65_RS00695 0.34 -2.4 160,299 + DZA65_RS00695 0.34 +1.3 160,300 - DZA65_RS00695 0.34 -0.6 160,300 - DZA65_RS00695 0.34 -1.0 160,337 - DZA65_RS00695 0.38 -0.2 160,393 + DZA65_RS00695 0.44 +0.1 160,410 + DZA65_RS00695 0.46 -1.2 160,613 + DZA65_RS00695 0.68 +0.1 160,613 + DZA65_RS00695 0.68 -1.1 160,624 + DZA65_RS00695 0.69 +0.9 160,668 + DZA65_RS00695 0.74 -0.1 160,669 - DZA65_RS00695 0.74 -0.1 160,691 + DZA65_RS00695 0.76 +0.4 160,692 - DZA65_RS00695 0.76 +1.1 160,717 - DZA65_RS00695 0.79 -1.0 160,717 - DZA65_RS00695 0.79 +1.5 160,797 + DZA65_RS00695 0.88 +1.1 160,797 + DZA65_RS00695 0.88 -0.5 160,797 + DZA65_RS00695 0.88 +0.9 160,797 + DZA65_RS00695 0.88 -1.4 160,798 - DZA65_RS00695 0.88 +0.0 160,798 - DZA65_RS00695 0.88 +0.7 160,798 - DZA65_RS00695 0.88 -0.7 160,897 + +1.1 160,897 + +0.9 160,897 + -0.4 160,898 - -1.1 160,898 - +1.1 160,898 - +0.2 160,899 + -0.8 160,899 + +1.1 160,899 + -1.3 160,899 + -1.4 160,899 + -0.9 160,899 + +0.7 160,900 - +0.8 160,900 - +0.0 160,900 - +0.5 160,900 - -1.7 160,900 - +1.1 160,900 - +1.5 160,900 - +0.5 160,928 + +0.5 160,929 - -0.4 160,929 - -0.5 160,929 - +0.8 160,929 - -0.5 160,929 - +0.8 160,976 + +1.1 160,976 + -2.1 160,976 + +1.4 160,976 + +0.5 160,976 + +0.1 160,977 - +0.9 160,977 - -0.7 160,977 - +0.9
Or see this region's nucleotide sequence