Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00630

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
145,705	+		DZA65_RS00625	0.54	-0.6
145,743	+		DZA65_RS00625	0.58	+1.8
145,750	-		DZA65_RS00625	0.58	+0.3
145,750	-		DZA65_RS00625	0.58	+1.2
145,753	-		DZA65_RS00625	0.59	+0.2
145,813	-		DZA65_RS00625	0.65	-1.1
145,813	-		DZA65_RS00625	0.65	-1.2
145,888	-		DZA65_RS00625	0.72	+0.1
145,920	-		DZA65_RS00625	0.75	+1.1
145,920	-		DZA65_RS00625	0.75	+0.1
145,920	-		DZA65_RS00625	0.75	+0.8
146,033	-		DZA65_RS00625	0.87	-0.3
146,126	+				+0.7
146,126	+				+0.1
146,127	-				+2.1
146,127	-				-1.7
146,127	-				+0.1
146,127	-				-1.2
146,128	+				+1.0
146,128	+				+2.5
146,128	+				-1.7
146,128	+				+0.5
146,128	+				+1.1
146,129	-				+0.8
146,155	-				-1.9
146,160	+				+0.7
146,161	-				-0.2
146,161	-				-1.5
146,164	+				-1.7
146,164	+				+0.9
146,165	-				+0.7
146,245	+				+1.4
146,246	-				-2.2
146,246	-				+0.1
146,255	+				-0.3
146,289	-				+1.1
146,307	+				-0.2
146,308	-				-0.2
146,308	-				+0.3
146,308	-				-0.0
146,308	-				-2.1
146,311	+				+1.1
146,312	-				-0.2
146,312	-				-0.5
146,340	+				-0.1
146,341	-				-1.1
146,341	-				+0.9
146,389	+				+0.7
146,417	+				+1.3
146,418	-				-0.2
146,421	+				-1.1
146,422	-				+1.1
146,422	-				+1.1
146,422	-				+1.9
146,442	+				-0.5
146,442	+				-0.2
146,442	+				-0.3
146,443	-				+2.1
146,443	-				-0.7
146,444	+				+0.2
146,444	+				+0.7
146,444	+				-1.4
146,444	+				-0.3
146,445	-				-0.2
146,446	+				-1.0
146,446	+				+1.1
146,446	+				+0.3
146,446	+				+0.3
146,447	-				-2.2
146,447	-				-0.9
146,447	-				-0.9
146,458	-				-0.9
146,458	-				+2.0
146,458	-				-0.5
146,509	-				-1.5
146,591	+				+1.2
146,591	+				-0.1
146,591	+				-0.6
146,591	+				+0.8
146,591	+				-0.9
146,591	+				+0.8
146,592	-				-0.7
146,592	-				-0.3
146,592	-				-0.2
146,592	-				-0.3
146,592	-				+0.8
146,592	-				-0.3
146,592	-				+1.0
146,592	-				-0.0
146,593	+				+0.4
146,593	+				-0.5
146,593	+				-0.1
146,593	+				+1.3
146,593	+				-0.9
146,593	+				-0.1
146,593	+				-1.2
146,593	+				-1.2
146,594	-				+1.3
146,594	-				+1.2
146,594	-				-0.5
146,594	-				+0.8
146,594	-				+0.9
146,594	-				+0.3
146,641	+				+0.2
146,641	+				-2.2
146,646	+				-0.9
146,646	+				+0.6
146,646	+				-0.4
146,646	+				-0.1
146,646	+				+1.1
146,647	-				+0.3
146,647	-				-0.1
146,648	+				-0.4
146,648	+				+0.9
146,648	+				-1.1
146,648	+				+1.0
146,648	+				-1.9
146,649	-				+0.1
146,649	-				+0.6
146,649	-				+0.4
146,693	+				-1.9
146,693	+				+1.7
146,693	+				-0.3
146,693	+				+1.3
146,693	+				+0.6
146,693	+				-0.8
146,694	-				+1.4
146,694	-				-1.5
146,694	-				-1.1
146,696	+				+0.3
146,696	+				-1.0
146,696	+				+0.7
146,696	+				+0.6
146,696	+				-1.0
146,696	+				-0.6
146,696	+				+0.4
146,696	+				+0.8
146,696	+				+0.6
146,696	+				-0.8
146,696	+				+1.1
146,696	+				-0.0
146,697	-				-3.6
146,697	-				+0.6
146,697	-				+0.1
146,697	-				-1.7
146,697	-				+1.0
146,697	-				-0.5
146,697	-				-0.0
146,697	-				-1.0
146,697	-				+0.8
146,697	-				+1.5
146,697	-				+0.7
146,697	-				-0.3
146,705	+				+0.4
146,706	-				-0.1
146,706	-				+0.9
146,706	-				+1.2
146,769	+				-0.1
146,769	+				-0.2
146,769	+				+1.0
146,769	+				-0.1
146,770	-				+1.1
146,770	-				+0.1
146,770	-				+0.9
146,770	-				-1.6
146,849	+		DZA65_RS00630	0.11	+1.1
146,849	+		DZA65_RS00630	0.11	-1.6
146,917	-		DZA65_RS00630	0.16	-0.3
146,917	-		DZA65_RS00630	0.16	+1.7
146,964	+		DZA65_RS00630	0.20	-0.3
146,964	+		DZA65_RS00630	0.20	+0.4
146,965	-		DZA65_RS00630	0.20	+1.3
146,965	-		DZA65_RS00630	0.20	-1.4
146,965	-		DZA65_RS00630	0.20	+1.7
146,977	+		DZA65_RS00630	0.21	+0.1
146,977	+		DZA65_RS00630	0.21	+0.1
146,978	-		DZA65_RS00630	0.21	-3.0
146,978	-		DZA65_RS00630	0.21	+1.1
147,024	+		DZA65_RS00630	0.24	+1.1
147,024	+		DZA65_RS00630	0.24	-0.5
147,024	+		DZA65_RS00630	0.24	+0.1
147,024	+		DZA65_RS00630	0.24	-2.2
147,024	+		DZA65_RS00630	0.24	+0.9
147,024	+		DZA65_RS00630	0.24	+0.1
147,024	+		DZA65_RS00630	0.24	+0.7
147,025	-		DZA65_RS00630	0.25	-0.7
147,025	-		DZA65_RS00630	0.25	+0.7
147,025	-		DZA65_RS00630	0.25	+0.7
147,025	-		DZA65_RS00630	0.25	+0.5
147,025	-		DZA65_RS00630	0.25	+0.5
147,025	-		DZA65_RS00630	0.25	+2.1
147,025	-		DZA65_RS00630	0.25	-0.5
147,025	-		DZA65_RS00630	0.25	-1.5
147,025	-		DZA65_RS00630	0.25	+0.0
147,025	-		DZA65_RS00630	0.25	-0.8
147,025	-		DZA65_RS00630	0.25	+2.0
147,066	-		DZA65_RS00630	0.28	-1.9
147,162	+		DZA65_RS00630	0.35	+1.1
147,220	+		DZA65_RS00630	0.39	+0.8
147,221	-		DZA65_RS00630	0.39	-1.7
147,224	+		DZA65_RS00630	0.40	+0.3
147,225	-		DZA65_RS00630	0.40	+1.3
147,225	-		DZA65_RS00630	0.40	+0.6
147,225	-		DZA65_RS00630	0.40	-2.2
147,256	+		DZA65_RS00630	0.42	+0.3
147,256	+		DZA65_RS00630	0.42	+1.4
147,257	-		DZA65_RS00630	0.42	+0.3
147,257	-		DZA65_RS00630	0.42	-0.5
147,257	-		DZA65_RS00630	0.42	+0.7
147,289	+		DZA65_RS00630	0.44	-0.6
147,289	+		DZA65_RS00630	0.44	-0.9
147,289	+		DZA65_RS00630	0.44	+1.2
147,290	-		DZA65_RS00630	0.44	+1.1
147,305	+		DZA65_RS00630	0.46	+1.4
147,305	+		DZA65_RS00630	0.46	-0.5
147,305	+		DZA65_RS00630	0.46	-2.4
147,306	-		DZA65_RS00630	0.46	-1.9
147,366	+		DZA65_RS00630	0.50	-0.2
147,366	+		DZA65_RS00630	0.50	+0.5
147,367	-		DZA65_RS00630	0.50	+0.4
147,387	-		DZA65_RS00630	0.52	+1.6
147,398	+		DZA65_RS00630	0.53	-0.9
147,438	+		DZA65_RS00630	0.56	-1.2
147,438	+		DZA65_RS00630	0.56	+2.1
147,439	-		DZA65_RS00630	0.56	-1.2
147,439	-				+1.5
147,546	-		DZA65_RS00630	0.64	+0.6
147,546	-		DZA65_RS00630	0.64	-0.1
147,549	-		DZA65_RS00630	0.64	-0.5
147,626	+		DZA65_RS00630	0.70	+1.8
147,626	+		DZA65_RS00630	0.70	-2.2
147,626	+		DZA65_RS00630	0.70	-0.4
147,626	+		DZA65_RS00630	0.70	+1.2
147,627	-		DZA65_RS00630	0.70	+0.1
147,627	-		DZA65_RS00630	0.70	+0.2
147,627	-		DZA65_RS00630	0.70	+0.4
147,627	-		DZA65_RS00630	0.70	+1.1
147,627	-		DZA65_RS00630	0.70	+0.1
147,627	-		DZA65_RS00630	0.70	+0.6
147,631	+		DZA65_RS00630	0.70	-1.5
147,632	-		DZA65_RS00630	0.70	-1.9
147,632	-		DZA65_RS00630	0.70	-0.1
147,632	-		DZA65_RS00630	0.70	-0.9
147,632	-		DZA65_RS00630	0.70	-0.3
147,663	+		DZA65_RS00630	0.73	-0.7
147,663	+				+0.1
147,664	-		DZA65_RS00630	0.73	+1.5
147,675	-		DZA65_RS00630	0.74	+0.3
147,675	-		DZA65_RS00630	0.74	-2.5
147,758	+		DZA65_RS00630	0.80	-0.1
147,758	+		DZA65_RS00630	0.80	+1.1
147,759	-		DZA65_RS00630	0.80	+0.6
147,759	-		DZA65_RS00630	0.80	+2.1
147,813	+		DZA65_RS00630	0.84	-0.7
147,814	-		DZA65_RS00630	0.84	-0.3
147,814	-		DZA65_RS00630	0.84	+0.5
147,814	-		DZA65_RS00630	0.84	-1.9
147,814	-		DZA65_RS00630	0.84	+1.5
147,854	+		DZA65_RS00630	0.87	+2.3
147,855	-		DZA65_RS00630	0.87	+0.4
147,855	-		DZA65_RS00630	0.87	-1.2
147,894	-				+0.8
147,931	+				-0.8
147,932	-				+1.8
147,932	-				-0.1
147,935	+				-1.9
147,935	+				+1.1
147,935	+				+0.6
147,935	+				+0.5
147,935	+				+0.1
147,936	-				+0.3
147,936	-				+1.1
147,936	-				+1.1
147,936	-				+1.1
147,936	-				-1.9
147,936	-				-1.9
147,995	+				-0.2
147,995	+				-0.9
147,995	+				-0.2
147,996	-				+0.6
147,996	-				-1.2
148,001	+				-0.3
148,002	-				-1.2
148,002	-				+0.1
148,016	+				+0.1
148,016	+				+0.5
148,017	-				+0.7
148,017	-				-1.2
148,049	+				-1.7
148,049	+				+0.1
148,055	-				-0.2
148,055	-				+1.7
148,055	-				+1.5
148,060	+				+0.3
148,060	+				+0.7
148,060	+				-0.8
148,060	+				-0.5
148,061	-				-0.1
148,061	-				-0.0
148,064	+				-0.4
148,072	-				-0.7
148,089	-				+0.1
148,103	+				+0.9
148,103	+				+0.1
148,103	+				+0.7
148,103	+				+0.1
148,103	+				+2.7
148,103	+				-0.5
148,103	+				+1.1
148,103	+				+1.1
148,104	-				-1.9
148,104	-				-0.7
148,108	+				-0.5
148,108	+				+4.4
148,112	+				+0.5
148,123	+				+0.2
148,184	+				-0.4
148,184	+				-0.1
148,184	+				+1.5
148,184	+				+0.4
148,185	-				-1.2
148,185	-				+0.1
148,192	+				+0.1
148,193	-				+1.4
148,196	-				+1.9
148,196	-				+1.4
148,196	-				+1.2
148,206	+				-1.4
148,213	-				-3.1
148,214	+				+1.7
148,214	+				+0.2
148,214	+				+0.5
148,214	+				-0.1
148,214	+				+0.5
148,214	+				+0.1
148,215	-				+1.2
148,215	-				-1.0
148,215	-				+0.8
148,215	-				-1.7
148,215	-				-0.3
148,215	-				+0.6
148,215	-				+0.7
148,215	-				+0.1
148,215	-				+0.4
148,216	+				+3.8
148,283	+				-0.5
148,284	-				-1.4
148,286	+				-1.2
148,286	+				-0.4
148,286	+				+0.6
148,353	+				+0.9
148,353	+				+1.1
148,354	-				-1.2
148,438	-				+0.5
148,451	+				+1.1
148,452	-				-0.6
148,521	-				+0.6
148,521	-				-0.3
148,613	+		DZA65_RS00635	0.20	-1.0
148,613	+		DZA65_RS00635	0.20	+0.3
148,613	+		DZA65_RS00635	0.20	-0.8
148,613	+		DZA65_RS00635	0.20	+1.4
148,613	+		DZA65_RS00635	0.20	+0.5
148,613	+		DZA65_RS00635	0.20	-0.5
148,614	-		DZA65_RS00635	0.20	-0.5
148,614	-		DZA65_RS00635	0.20	-1.9
148,614	-		DZA65_RS00635	0.20	+0.1
148,614	-		DZA65_RS00635	0.20	-0.2
148,614	-				+0.1
148,647	+		DZA65_RS00635	0.27	+0.6
148,647	+		DZA65_RS00635	0.27	+0.1
148,647	+		DZA65_RS00635	0.27	+0.6
148,647	+		DZA65_RS00635	0.27	+0.5
148,647	+		DZA65_RS00635	0.27	-0.1
148,647	+		DZA65_RS00635	0.27	-0.7
148,648	-		DZA65_RS00635	0.27	+0.2
148,648	-		DZA65_RS00635	0.27	+1.1
148,648	-		DZA65_RS00635	0.27	-1.2
148,648	-		DZA65_RS00635	0.27	+1.0
148,648	-		DZA65_RS00635	0.27	-1.8
148,648	-				+0.8
148,648	-		DZA65_RS00635	0.27	-0.5
148,648	-		DZA65_RS00635	0.27	+0.9
148,649	+		DZA65_RS00635	0.27	-2.2
148,649	+		DZA65_RS00635	0.27	-0.1
148,650	-		DZA65_RS00635	0.27	+3.7
148,650	-		DZA65_RS00635	0.27	-0.5
148,676	+		DZA65_RS00635	0.33	-0.4
148,676	+		DZA65_RS00635	0.33	-0.5
148,676	+		DZA65_RS00635	0.33	+1.3
148,677	-		DZA65_RS00635	0.33	-0.9
148,677	-		DZA65_RS00635	0.33	+1.6
148,677	-		DZA65_RS00635	0.33	-1.9
148,679	+		DZA65_RS00635	0.34	-1.6
148,679	+		DZA65_RS00635	0.34	+0.6
148,679	+		DZA65_RS00635	0.34	-0.5
148,679	+		DZA65_RS00635	0.34	-0.5
148,679	+		DZA65_RS00635	0.34	+0.9
148,679	+				-0.5
148,679	+		DZA65_RS00635	0.34	+0.1
148,680	-		DZA65_RS00635	0.34	+0.7
148,680	-		DZA65_RS00635	0.34	+2.4
148,680	-		DZA65_RS00635	0.34	+0.1
148,680	-		DZA65_RS00635	0.34	+0.9
148,680	-		DZA65_RS00635	0.34	-0.1
148,680	-		DZA65_RS00635	0.34	-0.4
148,704	-		DZA65_RS00635	0.39	+1.9
148,714	+		DZA65_RS00635	0.41	-1.8
148,715	-		DZA65_RS00635	0.41	+0.1
148,721	+		DZA65_RS00635	0.42	+0.7
148,733	+		DZA65_RS00635	0.45	+0.8
148,733	+		DZA65_RS00635	0.45	-1.6
148,734	-		DZA65_RS00635	0.45	+0.6
148,737	+		DZA65_RS00635	0.46	-1.7
148,737	+		DZA65_RS00635	0.46	+0.1
148,737	+		DZA65_RS00635	0.46	-0.4
148,737	+		DZA65_RS00635	0.46	+0.9
148,737	+		DZA65_RS00635	0.46	+0.4
148,737	+		DZA65_RS00635	0.46	-0.4
148,737	+		DZA65_RS00635	0.46	+0.5
148,737	+		DZA65_RS00635	0.46	+0.1
148,737	+		DZA65_RS00635	0.46	+0.7
148,737	+		DZA65_RS00635	0.46	-1.9
148,737	+		DZA65_RS00635	0.46	+0.7
148,737	+		DZA65_RS00635	0.46	-1.9
148,737	+		DZA65_RS00635	0.46	-0.5
148,737	+		DZA65_RS00635	0.46	-1.1
148,738	-		DZA65_RS00635	0.46	+0.3
148,738	-		DZA65_RS00635	0.46	-0.9
148,738	-		DZA65_RS00635	0.46	+0.1
148,738	-		DZA65_RS00635	0.46	+0.3
148,738	-		DZA65_RS00635	0.46	+0.3
148,738	-		DZA65_RS00635	0.46	+0.1
148,738	-		DZA65_RS00635	0.46	-1.1
148,738	-		DZA65_RS00635	0.46	-0.3
148,738	-		DZA65_RS00635	0.46	-0.5
148,739	+		DZA65_RS00635	0.46	-0.2
148,739	+		DZA65_RS00635	0.46	-2.2
148,740	-		DZA65_RS00635	0.46	-0.4
148,740	-		DZA65_RS00635	0.46	-0.5
148,740	-		DZA65_RS00635	0.46	-2.1
148,740	-		DZA65_RS00635	0.46	+0.2
148,740	-		DZA65_RS00635	0.46	+0.5
148,740	-		DZA65_RS00635	0.46	-1.2
148,744	+		DZA65_RS00635	0.47	-1.2
148,744	+		DZA65_RS00635	0.47	-2.4
148,745	-		DZA65_RS00635	0.48	-0.2
148,788	+		DZA65_RS00635	0.57	+0.1
148,790	+		DZA65_RS00635	0.57	-0.5
148,790	+		DZA65_RS00635	0.57	-0.4
148,791	-		DZA65_RS00635	0.57	+1.0
148,791	-		DZA65_RS00635	0.57	+0.1
148,791	-		DZA65_RS00635	0.57	-1.1
148,791	-		DZA65_RS00635	0.57	-1.2
148,813	+		DZA65_RS00635	0.62	+2.1
148,813	+		DZA65_RS00635	0.62	+0.4
148,813	+		DZA65_RS00635	0.62	-0.9
148,813	+		DZA65_RS00635	0.62	-1.0
148,813	+		DZA65_RS00635	0.62	+0.2
148,817	+		DZA65_RS00635	0.63	-1.9
148,817	+		DZA65_RS00635	0.63	+1.0
148,817	+		DZA65_RS00635	0.63	+0.4
148,817	+		DZA65_RS00635	0.63	-1.9
148,818	-		DZA65_RS00635	0.63	-0.2
148,818	-		DZA65_RS00635	0.63	+0.8
148,818	-		DZA65_RS00635	0.63	-0.7
148,818	-		DZA65_RS00635	0.63	-1.2
148,818	-		DZA65_RS00635	0.63	-0.1
148,823	+		DZA65_RS00635	0.64	+0.1
148,823	+		DZA65_RS00635	0.64	-1.1
148,823	+		DZA65_RS00635	0.64	+0.4
148,823	+		DZA65_RS00635	0.64	-1.7
148,823	+		DZA65_RS00635	0.64	+0.1
148,824	-		DZA65_RS00635	0.64	+1.5
148,824	-		DZA65_RS00635	0.64	-0.1
148,829	+		DZA65_RS00635	0.65	-0.5
148,830	-		DZA65_RS00635	0.66	+0.4
148,937	+		DZA65_RS00635	0.88	-1.2
148,937	+		DZA65_RS00635	0.88	+0.6
148,937	+		DZA65_RS00635	0.88	-0.1
148,938	-		DZA65_RS00635	0.89	-2.1
148,938	-		DZA65_RS00635	0.89	+0.3
148,938	-		DZA65_RS00635	0.89	+0.9
148,938	-		DZA65_RS00635	0.89	+0.3
148,938	-		DZA65_RS00635	0.89	-1.4
148,938	-		DZA65_RS00635	0.89	-0.7
148,938	-		DZA65_RS00635	0.89	-1.1
148,938	-		DZA65_RS00635	0.89	-1.2
148,959	+				+2.3
148,959	+				-0.6
148,959	+				+0.5
148,959	+				-0.7
148,959	+				-1.7
148,959	+				+0.5
148,959	+				-0.4
148,959	+				+0.5
148,959	+				-0.6
148,959	+				+0.8
148,959	+				-0.1
148,960	-				+0.1
148,960	-				+0.5
148,960	-				-0.4
148,960	-				+1.2
148,960	-				+1.3
148,960	-				+0.8
148,989	+				-0.7
148,989	+				+0.0
148,989	+				-1.9
148,989	+				-1.5
148,989	+				+0.3
148,989	+				+1.1
148,989	+				-0.9
148,990	-				-2.1
148,990	-				-0.2
148,990	-				+1.1
148,990	-				+0.8
148,990	-				-0.2
148,990	-				-1.0
148,990	-				+0.5