Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00555

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00550 and DZA65_RS00555 are separated by 266 nucleotidesDZA65_RS00555 and DZA65_RS00560 are separated by 1 nucleotides DZA65_RS00550: DZA65_RS00550 - IS630 family transposase, at 126,251 to 127,288 _RS00550 DZA65_RS00555: DZA65_RS00555 - hypothetical protein, at 127,555 to 128,598 _RS00555 DZA65_RS00560: DZA65_RS00560 - hypothetical protein, at 128,600 to 130,171 _RS00560 Position (kb) 127 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 127.385 kb on + strandat 127.389 kb on + strandat 127.389 kb on + strandat 127.401 kb on + strandat 127.402 kb on - strandat 127.402 kb on - strandat 127.406 kb on + strandat 127.406 kb on + strandat 127.406 kb on + strandat 127.406 kb on + strandat 127.406 kb on + strandat 127.407 kb on - strandat 127.407 kb on - strandat 127.407 kb on - strandat 127.407 kb on - strandat 127.407 kb on - strandat 127.417 kb on + strandat 127.418 kb on - strandat 127.419 kb on + strandat 127.419 kb on + strandat 127.419 kb on + strandat 127.420 kb on - strandat 127.432 kb on + strandat 127.445 kb on + strandat 127.445 kb on + strandat 127.446 kb on - strandat 127.446 kb on - strandat 127.461 kb on + strandat 127.462 kb on - strandat 127.462 kb on - strandat 127.535 kb on - strandat 127.571 kb on + strandat 127.591 kb on - strandat 127.657 kb on + strandat 127.658 kb on - strandat 127.673 kb on + strandat 127.746 kb on + strand, within DZA65_RS00555at 127.757 kb on + strand, within DZA65_RS00555at 127.757 kb on + strand, within DZA65_RS00555at 127.758 kb on - strand, within DZA65_RS00555at 127.760 kb on + strand, within DZA65_RS00555at 127.767 kb on + strand, within DZA65_RS00555at 127.845 kb on - strand, within DZA65_RS00555at 127.941 kb on + strand, within DZA65_RS00555at 127.941 kb on + strand, within DZA65_RS00555at 127.974 kb on + strand, within DZA65_RS00555at 127.974 kb on + strand, within DZA65_RS00555at 127.975 kb on - strand, within DZA65_RS00555at 127.975 kb on - strand, within DZA65_RS00555at 128.029 kb on - strand, within DZA65_RS00555at 128.161 kb on - strand, within DZA65_RS00555at 128.284 kb on - strand, within DZA65_RS00555at 128.285 kb on + strand, within DZA65_RS00555at 128.324 kb on + strand, within DZA65_RS00555at 128.325 kb on - strand, within DZA65_RS00555at 128.541 kb on + strandat 128.541 kb on + strandat 128.686 kb on - strandat 128.687 kb on + strandat 128.687 kb on + strandat 128.761 kb on + strand, within DZA65_RS00560at 128.776 kb on - strand, within DZA65_RS00560at 128.905 kb on + strand, within DZA65_RS00560at 129.083 kb on - strand, within DZA65_RS00560at 129.256 kb on + strand, within DZA65_RS00560at 129.368 kb on - strand, within DZA65_RS00560at 129.414 kb on + strand, within DZA65_RS00560at 129.415 kb on - strand, within DZA65_RS00560at 129.525 kb on + strand, within DZA65_RS00560

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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127,385 + -0.6
127,389 + +0.5
127,389 + -0.3
127,401 + +1.1
127,402 - +0.5
127,402 - -0.9
127,406 + -2.5
127,406 + +1.8
127,406 + -1.1
127,406 + +0.5
127,406 + +0.3
127,407 - +0.1
127,407 - -0.5
127,407 - -0.7
127,407 - +0.9
127,407 - +0.2
127,417 + +0.1
127,418 - -0.3
127,419 + -0.2
127,419 + +0.8
127,419 + -2.2
127,420 - +1.7
127,432 + -0.5
127,445 + -0.9
127,445 + +1.1
127,446 - +0.2
127,446 - -0.7
127,461 + +0.8
127,462 - +0.5
127,462 - -0.6
127,535 - +1.2
127,571 + -1.4
127,591 - +0.7
127,657 + -0.5
127,658 - +0.8
127,673 + +2.1
127,746 + DZA65_RS00555 0.18 -0.5
127,757 + DZA65_RS00555 0.19 -0.5
127,757 + DZA65_RS00555 0.19 +0.3
127,758 - DZA65_RS00555 0.19 -0.5
127,760 + DZA65_RS00555 0.20 +0.1
127,767 + DZA65_RS00555 0.20 +0.6
127,845 - DZA65_RS00555 0.28 +0.1
127,941 + DZA65_RS00555 0.37 +1.3
127,941 + DZA65_RS00555 0.37 +0.7
127,974 + DZA65_RS00555 0.40 -3.2
127,974 + DZA65_RS00555 0.40 -1.2
127,975 - DZA65_RS00555 0.40 +0.1
127,975 - DZA65_RS00555 0.40 +1.6
128,029 - DZA65_RS00555 0.45 +0.6
128,161 - DZA65_RS00555 0.58 +0.1
128,284 - DZA65_RS00555 0.70 -1.6
128,285 + DZA65_RS00555 0.70 +1.7
128,324 + DZA65_RS00555 0.74 +1.8
128,325 - DZA65_RS00555 0.74 -0.9
128,541 + +0.1
128,541 + +0.1
128,686 - +0.1
128,687 + -0.5
128,687 + +0.5
128,761 + DZA65_RS00560 0.10 +1.2
128,776 - DZA65_RS00560 0.11 -0.4
128,905 + DZA65_RS00560 0.19 -0.1
129,083 - DZA65_RS00560 0.31 +1.8
129,256 + DZA65_RS00560 0.42 +0.7
129,368 - DZA65_RS00560 0.49 +0.7
129,414 + DZA65_RS00560 0.52 +1.6
129,415 - DZA65_RS00560 0.52 +0.7
129,525 + DZA65_RS00560 0.59 +0.1

Or see this region's nucleotide sequence