Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00375

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
87,819	+				+1.8
87,822	-				+0.4
87,822	-				-2.1
87,822	-				-0.4
87,831	+				+0.6
87,831	+				-1.6
87,831	+				-0.2
87,831	+				-1.2
87,831	+				-0.5
87,832	-				-0.7
87,832	-				+0.1
87,832	-				-0.5
87,852	+				-0.3
87,852	+				-1.2
87,852	+				-0.8
87,853	-				-1.2
87,853	-				+0.1
87,853	-				-1.2
87,853	-				-0.3
87,853	-				+1.4
87,853	-				+1.3
87,855	+				-0.2
87,855	+				-1.2
87,855	+				-1.4
87,855	+				+1.6
87,855	+				-0.2
87,856	-				-1.5
87,856	-				+0.9
87,856	-				+0.9
87,856	-				-0.1
87,905	+				-0.3
87,905	+				-0.0
87,906	-				+0.2
87,906	-				-0.5
87,927	+				-0.5
88,080	+		DZA65_RS00370	0.24	+0.7
88,080	+		DZA65_RS00370	0.24	+0.7
88,080	+		DZA65_RS00370	0.24	-0.3
88,080	+		DZA65_RS00370	0.24	-0.2
88,080	+		DZA65_RS00370	0.24	-1.5
88,080	+		DZA65_RS00370	0.24	+0.3
88,080	+		DZA65_RS00370	0.24	-0.5
88,081	-		DZA65_RS00370	0.24	-0.9
88,081	-		DZA65_RS00370	0.24	-0.5
88,081	-		DZA65_RS00370	0.24	-1.9
88,081	-		DZA65_RS00370	0.24	-1.7
88,081	-		DZA65_RS00370	0.24	+0.0
88,081	-		DZA65_RS00370	0.24	-1.5
88,081	-		DZA65_RS00370	0.24	-0.9
88,259	+		DZA65_RS00370	0.42	-0.3
88,259	+		DZA65_RS00370	0.42	-2.4
88,259	+		DZA65_RS00370	0.42	-0.1
88,260	-		DZA65_RS00370	0.42	-1.5
88,260	-		DZA65_RS00370	0.42	+0.3
88,260	-		DZA65_RS00370	0.42	-1.2
88,260	-		DZA65_RS00370	0.42	-0.2
88,288	-		DZA65_RS00370	0.45	+1.1
88,353	+		DZA65_RS00370	0.52	+1.0
88,353	+		DZA65_RS00370	0.52	+0.2
88,353	+		DZA65_RS00370	0.52	-1.2
88,353	+		DZA65_RS00370	0.52	-0.9
88,353	+		DZA65_RS00370	0.52	+0.6
88,354	-		DZA65_RS00370	0.52	+1.4
88,354	-		DZA65_RS00370	0.52	-0.9
88,354	-				-0.9
88,354	-		DZA65_RS00370	0.52	-1.2
88,354	-		DZA65_RS00370	0.52	-3.3
88,381	+		DZA65_RS00370	0.55	+0.4
88,381	+		DZA65_RS00370	0.55	+0.3
88,415	-		DZA65_RS00370	0.59	+1.1
88,415	-		DZA65_RS00370	0.59	+1.8
88,641	+		DZA65_RS00370	0.83	+1.9
88,641	+				+0.1
88,642	-		DZA65_RS00370	0.83	-2.2
88,642	-		DZA65_RS00370	0.83	+0.4
88,642	-		DZA65_RS00370	0.83	-1.2
88,666	+		DZA65_RS00370	0.85	+0.8
88,667	-		DZA65_RS00370	0.85	-0.8
88,719	+				+0.9
88,719	+				-0.3
88,719	+				+0.7
88,719	+				-0.8
88,719	+				-0.5
88,719	+				+1.1
88,719	+				+0.2
88,719	+				-0.6
88,719	+				+1.4
88,720	-				+0.6
88,720	-				-0.2
88,720	-				+0.3
88,720	-				-0.2
88,720	-				-0.2
88,737	+				+0.4
88,738	-				+1.3
88,738	-				-1.4
88,780	+				-0.4
88,780	+				-0.5
88,781	-				+0.3
88,781	-				-0.7
88,781	-				+0.3
88,781	-				-2.4
88,784	+				-0.5
88,784	+				-1.7
88,784	+				+1.1
88,784	+				-0.3
88,784	+				+1.1
88,785	-				-1.1
88,785	-				-2.2
88,785	-				-0.8
88,785	-				-0.1
88,785	-				+0.5
88,804	+				-0.5
88,804	+				-0.8
88,804	+				+0.2
88,804	+				-1.5
88,805	-				+0.4
88,805	-				+0.3
88,805	-				-0.3
88,805	-				+0.2
88,810	+				-1.5
88,810	+				-0.9
88,810	+				+0.6
88,810	+				-0.1
88,810	+				+0.6
88,810	+				-1.6
88,810	+				+0.4
88,810	+				-0.9
88,810	+				-0.1
88,810	+				-1.2
88,810	+				+1.1
88,810	+				-1.2
88,810	+				-1.4
88,810	+				-1.5
88,810	+				-1.1
88,811	-				-0.3
88,811	-				-1.1
88,811	-				-0.2
88,811	-				-1.2
88,811	-				+0.1
88,811	-				+1.3
88,811	-				-0.9
88,811	-				+1.4
88,811	-				+0.3
88,811	-				-1.2
88,811	-				-0.5
88,811	-				+0.8
88,811	-				+0.3
88,811	-				+0.2
88,811	-				+0.3
88,811	-				-0.5
88,811	-				-1.2
88,881	-				-0.9
88,946	+		DZA65_RS00375	0.18	+0.1
88,951	+		DZA65_RS00375	0.19	+0.1
88,951	+		DZA65_RS00375	0.19	+1.1
88,951	+		DZA65_RS00375	0.19	-0.2
88,951	+		DZA65_RS00375	0.19	-0.8
88,951	+		DZA65_RS00375	0.19	+0.7
88,951	+		DZA65_RS00375	0.19	+1.5
88,951	+		DZA65_RS00375	0.19	+0.5
88,951	+		DZA65_RS00375	0.19	+1.1
88,951	+		DZA65_RS00375	0.19	+0.1
88,951	+		DZA65_RS00375	0.19	+0.5
88,951	+		DZA65_RS00375	0.19	-0.1
88,951	+		DZA65_RS00375	0.19	+2.0
88,951	+		DZA65_RS00375	0.19	+0.8
88,951	+		DZA65_RS00375	0.19	+0.5
88,951	+		DZA65_RS00375	0.19	-0.4
88,951	+		DZA65_RS00375	0.19	+1.0
88,951	+		DZA65_RS00375	0.19	+1.9
88,951	+		DZA65_RS00375	0.19	-2.1
88,951	+		DZA65_RS00375	0.19	-0.1
88,951	+		DZA65_RS00375	0.19	-0.2
88,951	+		DZA65_RS00375	0.19	-0.2
88,951	+		DZA65_RS00375	0.19	+1.0
88,952	-		DZA65_RS00375	0.19	+1.6
88,952	-		DZA65_RS00375	0.19	+0.3
88,952	-		DZA65_RS00375	0.19	-0.4
88,952	-		DZA65_RS00375	0.19	+0.3
88,952	-		DZA65_RS00375	0.19	-2.4
88,952	-		DZA65_RS00375	0.19	-1.9
88,952	-		DZA65_RS00375	0.19	-2.1
88,952	-		DZA65_RS00375	0.19	-0.1
88,952	-		DZA65_RS00375	0.19	-0.8
88,952	-		DZA65_RS00375	0.19	+1.1
88,952	-		DZA65_RS00375	0.19	+1.1
88,952	-		DZA65_RS00375	0.19	+0.3
88,952	-		DZA65_RS00375	0.19	-1.1
88,952	-		DZA65_RS00375	0.19	-0.4
88,952	-		DZA65_RS00375	0.19	+0.2
88,952	-		DZA65_RS00375	0.19	-0.1
88,952	-		DZA65_RS00375	0.19	-0.6
88,952	-		DZA65_RS00375	0.19	-1.7
88,952	-		DZA65_RS00375	0.19	-0.5
88,952	-		DZA65_RS00375	0.19	-0.1
88,952	-		DZA65_RS00375	0.19	-0.1
88,952	-		DZA65_RS00375	0.19	+2.0
88,952	-		DZA65_RS00375	0.19	+1.3
88,952	-		DZA65_RS00375	0.19	+1.2
88,955	+		DZA65_RS00375	0.20	-0.2
88,955	+		DZA65_RS00375	0.20	-0.1
88,955	+		DZA65_RS00375	0.20	-0.3
88,955	+		DZA65_RS00375	0.20	+0.7
88,955	+		DZA65_RS00375	0.20	+1.3
88,955	+		DZA65_RS00375	0.20	+0.3
88,955	+		DZA65_RS00375	0.20	+1.7
88,955	+		DZA65_RS00375	0.20	+1.3
88,955	+		DZA65_RS00375	0.20	-1.6
88,955	+		DZA65_RS00375	0.20	+1.1
88,955	+		DZA65_RS00375	0.20	+0.5
88,955	+		DZA65_RS00375	0.20	+0.8
88,956	-		DZA65_RS00375	0.20	-1.1
88,956	-		DZA65_RS00375	0.20	+0.9
88,956	-		DZA65_RS00375	0.20	-0.5
88,956	-		DZA65_RS00375	0.20	+0.1
88,956	-		DZA65_RS00375	0.20	-0.1
88,956	-		DZA65_RS00375	0.20	-1.3
88,956	-		DZA65_RS00375	0.20	-0.5
89,034	+		DZA65_RS00375	0.31	+0.2
89,034	+		DZA65_RS00375	0.31	+2.9
89,035	-		DZA65_RS00375	0.31	-0.1
89,131	-		DZA65_RS00375	0.45	-0.5
89,158	+		DZA65_RS00375	0.49	-0.5
89,158	+		DZA65_RS00375	0.49	+1.5
89,158	+		DZA65_RS00375	0.49	+1.1
89,158	+		DZA65_RS00375	0.49	+0.2
89,158	+		DZA65_RS00375	0.49	-0.0
89,159	-		DZA65_RS00375	0.49	-0.2
89,159	-		DZA65_RS00375	0.49	+0.5
89,159	-		DZA65_RS00375	0.49	+0.4
89,159	-		DZA65_RS00375	0.49	+0.2
89,159	-		DZA65_RS00375	0.49	-1.2
89,159	-		DZA65_RS00375	0.49	-0.5
89,159	-		DZA65_RS00375	0.49	-1.8
89,197	+		DZA65_RS00375	0.55	+0.1
89,198	-		DZA65_RS00375	0.55	-0.7
89,205	+		DZA65_RS00375	0.56	+0.8
89,205	+		DZA65_RS00375	0.56	+0.1
89,205	+		DZA65_RS00375	0.56	+0.4
89,205	+		DZA65_RS00375	0.56	+0.1
89,205	+		DZA65_RS00375	0.56	-1.5
89,205	+		DZA65_RS00375	0.56	-0.9
89,205	+		DZA65_RS00375	0.56	-0.1
89,205	+		DZA65_RS00375	0.56	-1.1
89,206	-		DZA65_RS00375	0.56	-0.0
89,206	-		DZA65_RS00375	0.56	+0.1
89,206	-		DZA65_RS00375	0.56	-0.5
89,206	-		DZA65_RS00375	0.56	-0.9
89,206	-		DZA65_RS00375	0.56	+0.2
89,378	+		DZA65_RS00375	0.81	+0.8
89,408	+		DZA65_RS00375	0.85	+0.1
89,438	+		DZA65_RS00375	0.89	+0.8
89,438	+		DZA65_RS00375	0.89	+1.1
89,439	-		DZA65_RS00375	0.90	+0.7
89,439	-		DZA65_RS00375	0.90	-0.1
89,439	-		DZA65_RS00375	0.90	+3.5
89,452	+				+0.3
89,474	-				-0.4
89,476	+				-0.8
89,476	+				-0.3
89,477	-				+0.8
89,502	+				+0.3
89,503	-				-0.2
89,592	+				-0.5
89,593	-				+0.9
89,593	-				+0.1
89,593	-				+1.6
89,595	-				+1.5
89,614	+				+0.3
89,647	+				+0.4
89,648	-				+1.1
89,648	-				+0.4
89,683	-				-0.2
89,683	-				+1.5
89,683	-				+0.1
89,710	+				-0.9
89,722	-				-1.5
89,754	-				+0.8
89,788	+				-0.5
89,789	-				+0.9
89,878	+				-0.2
89,905	+				+0.1
89,905	+				-0.1
89,906	-				+0.7
89,906	-				-0.9
89,911	+				-1.5
89,911	+				+0.1
89,938	+				-0.2
89,938	+				+2.1
89,938	+				+2.7
89,939	-				+2.5
89,939	-				+0.3
89,939	-				+2.5
89,939	-				-1.9
89,939	-				-0.1
89,939	-				+0.5
89,981	-				-0.1
89,981	-				-1.8
89,981	-				-0.0
89,981	-				-0.3
89,997	+				+1.1
90,019	+				-0.4
90,019	+				+0.1
90,019	+				-0.2
90,019	+				+0.4
90,020	-				-0.9
90,020	-				+0.3
90,020	-				+0.3
90,020	-				+0.2
90,031	+				+0.3
90,032	-				-1.4
90,032	-				+0.2
90,142	+		DZA65_RS00380	0.11	+0.3
90,143	-		DZA65_RS00380	0.11	-0.1
90,202	-		DZA65_RS00380	0.12	-2.7
90,279	+		DZA65_RS00380	0.14	+0.1
90,279	+		DZA65_RS00380	0.14	+0.5
90,279	+		DZA65_RS00380	0.14	+0.3
90,279	+		DZA65_RS00380	0.14	+0.7
90,279	+		DZA65_RS00380	0.14	-1.0
90,279	+		DZA65_RS00380	0.14	+1.5
90,280	-		DZA65_RS00380	0.14	-0.5
90,286	+		DZA65_RS00380	0.14	-1.3
90,286	+		DZA65_RS00380	0.14	-0.3
90,286	+		DZA65_RS00380	0.14	+0.3
90,286	+		DZA65_RS00380	0.14	+0.3
90,286	+		DZA65_RS00380	0.14	+0.8
90,286	+		DZA65_RS00380	0.14	+0.1
90,286	+		DZA65_RS00380	0.14	-0.4
90,286	+		DZA65_RS00380	0.14	+0.6
90,286	+		DZA65_RS00380	0.14	-0.8
90,286	+		DZA65_RS00380	0.14	+1.1
90,287	-		DZA65_RS00380	0.14	+0.1
90,287	-		DZA65_RS00380	0.14	+0.1
90,287	-		DZA65_RS00380	0.14	+1.7
90,287	-		DZA65_RS00380	0.14	-0.6
90,287	-		DZA65_RS00380	0.14	+0.8
90,287	-		DZA65_RS00380	0.14	-1.2
90,287	-		DZA65_RS00380	0.14	+0.8
90,419	+		DZA65_RS00380	0.17	-0.1
90,419	+		DZA65_RS00380	0.17	+0.8
90,419	+		DZA65_RS00380	0.17	+0.6
90,419	+		DZA65_RS00380	0.17	+0.1
90,420	-		DZA65_RS00380	0.17	+0.9
90,420	-		DZA65_RS00380	0.17	+0.1
90,420	-		DZA65_RS00380	0.17	+0.3
90,447	-		DZA65_RS00380	0.18	-0.8
90,447	-		DZA65_RS00380	0.18	+1.2
90,447	-		DZA65_RS00380	0.18	+0.1
90,447	-		DZA65_RS00380	0.18	-1.6
90,447	-		DZA65_RS00380	0.18	+1.4
90,447	-		DZA65_RS00380	0.18	+0.2