Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00335

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
80,976	+		DZA65_RS00330	0.24	+0.5
80,976	+		DZA65_RS00330	0.24	-1.9
80,976	+		DZA65_RS00330	0.24	-0.7
80,976	+		DZA65_RS00330	0.24	-0.1
80,976	+		DZA65_RS00330	0.24	-1.5
80,976	+		DZA65_RS00330	0.24	-0.4
80,976	+		DZA65_RS00330	0.24	+1.5
80,976	+		DZA65_RS00330	0.24	-0.7
80,976	+		DZA65_RS00330	0.24	+2.4
80,976	+		DZA65_RS00330	0.24	-0.5
80,976	+		DZA65_RS00330	0.24	-0.5
80,976	+		DZA65_RS00330	0.24	-1.1
80,976	+		DZA65_RS00330	0.24	-2.1
80,977	-		DZA65_RS00330	0.24	-0.5
80,977	-		DZA65_RS00330	0.24	+1.4
80,977	-		DZA65_RS00330	0.24	-0.9
80,977	-		DZA65_RS00330	0.24	-1.6
80,977	-		DZA65_RS00330	0.24	+1.2
80,977	-		DZA65_RS00330	0.24	+1.4
80,977	-		DZA65_RS00330	0.24	+1.2
80,977	-		DZA65_RS00330	0.24	-3.0
80,977	-		DZA65_RS00330	0.24	+0.6
80,977	-		DZA65_RS00330	0.24	+0.7
80,977	-		DZA65_RS00330	0.24	-0.0
80,977	-		DZA65_RS00330	0.24	+0.3
80,977	-		DZA65_RS00330	0.24	+1.1
80,977	-		DZA65_RS00330	0.24	-1.1
80,977	-		DZA65_RS00330	0.24	-1.2
80,977	-		DZA65_RS00330	0.24	-0.7
80,977	-		DZA65_RS00330	0.24	-2.0
80,994	+		DZA65_RS00330	0.25	+0.3
80,994	+		DZA65_RS00330	0.25	+1.1
80,994	+		DZA65_RS00330	0.25	-0.2
80,994	+		DZA65_RS00330	0.25	+0.6
80,994	+		DZA65_RS00330	0.25	+1.9
80,995	-		DZA65_RS00330	0.25	+0.3
80,995	-		DZA65_RS00330	0.25	+1.1
80,995	-		DZA65_RS00330	0.25	+1.2
80,995	-		DZA65_RS00330	0.25	+0.1
80,995	-		DZA65_RS00330	0.25	-0.9
81,032	+		DZA65_RS00330	0.28	+1.5
81,032	+		DZA65_RS00330	0.28	-1.7
81,032	+		DZA65_RS00330	0.28	-2.3
81,138	+		DZA65_RS00330	0.37	+0.5
81,153	+		DZA65_RS00330	0.38	-1.3
81,153	+		DZA65_RS00330	0.38	+0.5
81,153	+		DZA65_RS00330	0.38	+1.9
81,153	+		DZA65_RS00330	0.38	+0.2
81,153	+		DZA65_RS00330	0.38	+1.1
81,153	+		DZA65_RS00330	0.38	-0.7
81,153	+		DZA65_RS00330	0.38	-2.2
81,154	-		DZA65_RS00330	0.38	-0.6
81,154	-		DZA65_RS00330	0.38	+0.4
81,154	-		DZA65_RS00330	0.38	+0.7
81,154	-		DZA65_RS00330	0.38	-0.5
81,154	-		DZA65_RS00330	0.38	+0.1
81,189	+		DZA65_RS00330	0.41	-0.8
81,190	-		DZA65_RS00330	0.41	-0.8
81,190	-		DZA65_RS00330	0.41	+0.5
81,190	-		DZA65_RS00330	0.41	-0.7
81,190	-		DZA65_RS00330	0.41	+1.2
81,190	-		DZA65_RS00330	0.41	+1.1
81,322	+		DZA65_RS00330	0.52	+1.1
81,322	+		DZA65_RS00330	0.52	-0.2
81,322	+		DZA65_RS00330	0.52	+0.9
81,322	+		DZA65_RS00330	0.52	+1.1
81,322	+		DZA65_RS00330	0.52	-0.5
81,322	+		DZA65_RS00330	0.52	+0.3
81,323	-		DZA65_RS00330	0.52	-0.6
81,323	-		DZA65_RS00330	0.52	-2.5
81,323	-		DZA65_RS00330	0.52	-0.5
81,323	-		DZA65_RS00330	0.52	+0.2
81,323	-		DZA65_RS00330	0.52	+1.5
81,323	-		DZA65_RS00330	0.52	+0.5
81,323	-		DZA65_RS00330	0.52	-0.9
81,323	-		DZA65_RS00330	0.52	+0.3
81,323	-		DZA65_RS00330	0.52	-0.0
81,361	-		DZA65_RS00330	0.55	-0.7
81,532	+		DZA65_RS00330	0.69	+1.7
81,532	+		DZA65_RS00330	0.69	+1.3
81,532	+		DZA65_RS00330	0.69	-0.6
81,532	+		DZA65_RS00330	0.69	-1.9
81,532	+		DZA65_RS00330	0.69	+0.3
81,532	+		DZA65_RS00330	0.69	+0.1
81,532	+		DZA65_RS00330	0.69	-1.6
81,533	-		DZA65_RS00330	0.69	-0.0
81,533	-		DZA65_RS00330	0.69	+0.1
81,533	-		DZA65_RS00330	0.69	-1.5
81,533	-		DZA65_RS00330	0.69	+0.5
81,533	-		DZA65_RS00330	0.69	+2.4
81,584	+		DZA65_RS00330	0.73	-1.6
81,585	-		DZA65_RS00330	0.74	+0.5
81,585	-		DZA65_RS00330	0.74	-1.5
81,585	-		DZA65_RS00330	0.74	-0.2
81,721	+		DZA65_RS00330	0.85	-0.7
81,721	+		DZA65_RS00330	0.85	+1.5
81,721	+		DZA65_RS00330	0.85	+0.9
81,721	+		DZA65_RS00330	0.85	-0.5
81,721	+		DZA65_RS00330	0.85	+0.4
81,721	+		DZA65_RS00330	0.85	-1.2
81,722	-		DZA65_RS00330	0.85	+0.4
81,722	-		DZA65_RS00330	0.85	+0.5
81,722	-		DZA65_RS00330	0.85	+0.5
81,722	-		DZA65_RS00330	0.85	+1.4
81,722	-		DZA65_RS00330	0.85	-1.5
81,722	-		DZA65_RS00330	0.85	+0.1
81,731	+		DZA65_RS00330	0.85	-0.1
81,731	+		DZA65_RS00330	0.85	-1.0
81,731	+		DZA65_RS00330	0.85	+0.1
81,731	+		DZA65_RS00330	0.85	+0.2
81,731	+		DZA65_RS00330	0.85	+0.2
81,732	-		DZA65_RS00330	0.86	+1.9
81,732	-		DZA65_RS00330	0.86	-1.5
81,786	+				+1.6
81,786	+				-0.5
81,792	+				-0.5
81,793	-				-0.9
81,814	-				-1.9
81,846	+				+0.5
81,846	+				+0.0
81,846	+				+1.5
81,847	-				-0.4
81,894	+				-0.9
81,895	-				+0.2
81,900	-				-0.9
81,900	-				+1.3
81,947	+				+0.1
81,947	+				+0.2
81,948	-				+0.9
81,948	-				-0.5
81,948	-				+0.4
81,948	-				-0.2
81,970	-				-1.1
81,975	+				+0.1
81,976	-				+0.4
81,976	-				+0.1
81,976	-				-0.9
81,978	+				+0.8
81,978	+				-2.2
81,978	+				-0.3
81,978	+				+0.7
81,978	+				+0.3
81,978	+				+0.2
81,978	+				+0.7
81,978	+				+0.8
81,978	+				-0.2
81,978	+				+0.5
81,979	-				+0.9
81,979	-				-0.2
81,979	-				-2.2
81,979	-				-1.7
81,979	-				+1.1
81,979	-				-0.1
81,979	-				-0.4
81,979	-				+0.8
81,979	-				-1.4
81,979	-				+0.1
81,979	-				-1.9
81,979	-				-0.7
81,982	+				-0.2
81,982	+				-0.2
81,982	+				-0.5
81,982	+				+0.4
81,982	+				-1.2
81,982	+				-1.9
81,982	+				+0.5
81,982	+				+0.3
81,982	+				+0.5
81,982	+				-0.9
81,982	+				-0.9
81,982	+				-0.9
81,982	+				-0.5
81,982	+				+1.1
81,982	+				-0.9
81,982	+				+0.1
81,982	+				-0.9
81,982	+				-0.1
81,982	+				-0.1
81,982	+				-0.4
81,982	+				+1.1
81,982	+				-1.2
81,982	+				+0.6
81,982	+				-0.2
81,983	-				+0.1
81,983	-				+0.1
81,983	-				+0.2
81,983	-				+0.5
81,983	-				+0.7
81,983	-				+1.3
81,983	-				+0.6
81,983	-				-1.6
81,983	-				+1.1
81,983	-				-0.3
81,983	-				+2.2
81,983	-				-0.2
81,983	-				-0.1
81,983	-				+0.3
81,983	-				-0.6
81,983	-				+0.3
82,116	+		DZA65_RS00335	0.29	-1.1
82,116	+		DZA65_RS00335	0.29	-1.9
82,116	+		DZA65_RS00335	0.29	+0.3
82,116	+		DZA65_RS00335	0.29	-1.1
82,116	+		DZA65_RS00335	0.29	+0.8
82,116	+		DZA65_RS00335	0.29	-1.2
82,116	+		DZA65_RS00335	0.29	-0.9
82,116	+		DZA65_RS00335	0.29	+1.1
82,116	+		DZA65_RS00335	0.29	-0.3
82,116	+		DZA65_RS00335	0.29	-1.7
82,116	+		DZA65_RS00335	0.29	-0.8
82,116	+		DZA65_RS00335	0.29	-0.1
82,116	+		DZA65_RS00335	0.29	-0.2
82,117	-		DZA65_RS00335	0.29	-1.1
82,117	-		DZA65_RS00335	0.29	-0.0
82,117	-		DZA65_RS00335	0.29	+0.9
82,117	-		DZA65_RS00335	0.29	-0.7
82,117	-		DZA65_RS00335	0.29	-1.2
82,117	-		DZA65_RS00335	0.29	-0.2
82,117	-		DZA65_RS00335	0.29	-0.6
82,117	-		DZA65_RS00335	0.29	+0.4
82,117	-		DZA65_RS00335	0.29	+1.4
82,161	+		DZA65_RS00335	0.37	-1.1
82,161	+		DZA65_RS00335	0.37	-1.9
82,162	-		DZA65_RS00335	0.37	-0.7
82,162	-		DZA65_RS00335	0.37	-2.5
82,162	-		DZA65_RS00335	0.37	+0.5
82,162	-		DZA65_RS00335	0.37	+0.5
82,162	-		DZA65_RS00335	0.37	-0.7
82,258	+		DZA65_RS00335	0.53	+0.1
82,259	-		DZA65_RS00335	0.54	+0.5
82,345	+		DZA65_RS00335	0.69	-1.7
82,345	+		DZA65_RS00335	0.69	-2.4
82,345	+		DZA65_RS00335	0.69	-1.2
82,345	+		DZA65_RS00335	0.69	-1.3
82,345	+		DZA65_RS00335	0.69	-0.5
82,345	+		DZA65_RS00335	0.69	+1.1
82,345	+		DZA65_RS00335	0.69	-0.4
82,345	+		DZA65_RS00335	0.69	+0.6
82,345	+		DZA65_RS00335	0.69	+2.1
82,346	-		DZA65_RS00335	0.69	-1.7
82,346	-		DZA65_RS00335	0.69	-0.5
82,346	-		DZA65_RS00335	0.69	-1.2
82,346	-		DZA65_RS00335	0.69	-1.3
82,346	-		DZA65_RS00335	0.69	-0.5
82,346	-		DZA65_RS00335	0.69	+0.1
82,346	-		DZA65_RS00335	0.69	+0.1
82,346	-		DZA65_RS00335	0.69	-1.3
82,346	-		DZA65_RS00335	0.69	-0.7
82,381	+		DZA65_RS00335	0.75	-0.8
82,384	+		DZA65_RS00335	0.75	-0.1
82,384	+		DZA65_RS00335	0.75	+2.3
82,384	+		DZA65_RS00335	0.75	-0.4
82,384	+		DZA65_RS00335	0.75	+1.9
82,384	+		DZA65_RS00335	0.75	+1.1
82,385	-		DZA65_RS00335	0.76	-1.5
82,385	-		DZA65_RS00335	0.76	-2.4
82,389	+		DZA65_RS00335	0.76	-0.9
82,389	+		DZA65_RS00335	0.76	-1.5
82,390	-		DZA65_RS00335	0.76	+1.1
82,390	-		DZA65_RS00335	0.76	-0.5
82,390	-		DZA65_RS00335	0.76	+1.6
82,468	+				-0.3
82,468	+				-0.9
82,469	-				-0.1
82,469	-				-0.9
82,469	-				-0.5
82,528	+				-0.5
82,528	+				+0.8
82,528	+				-0.7
82,528	+				+0.2
82,528	+				-1.7
82,528	+				+0.1
82,528	+				+0.1
82,529	-				+0.3
82,529	-				+0.3
82,529	-				-0.9
82,529	-				+1.1
82,529	-				-1.7
82,529	-				+0.4
82,529	-				+1.3
82,574	+				-1.2
82,574	+				-0.7
82,613	-				-0.8
82,631	+				+0.1
82,661	+				+1.7
82,661	+				-1.5
82,662	-				-0.4
82,671	+				+0.7
82,671	+				+0.6
82,671	+				+0.6
82,671	+				-0.5
82,671	+				-0.7
82,671	+				+0.1
82,671	+				-1.2
82,671	+				-1.5
82,671	+				-0.7
82,672	-				-0.4
82,672	-				-1.4
82,672	-				+1.5
82,672	-				+0.9
82,672	-				-0.1
82,672	-				-0.5
82,672	-				-0.0
82,672	-				-0.0
82,672	-				+0.6
82,672	-				+0.7
82,672	-				-0.5
82,672	-				+1.4
82,672	-				+0.5
82,672	-				-0.6
82,672	-				+1.3
82,672	-				-0.5
82,673	+				+0.8
82,673	+				+0.4
82,673	+				+0.5
82,673	+				-0.0
82,673	+				-0.9
82,673	+				+1.1
82,673	+				+1.9
82,673	+				+3.3
82,673	+				-0.5
82,673	+				-1.0
82,673	+				-1.7
82,673	+				-2.4
82,673	+				+0.1
82,673	+				+0.7
82,673	+				-1.6
82,674	-				-1.3
82,674	-				-1.7
82,674	-				+1.7
82,674	-				-0.3
82,674	-				+0.1
82,674	-				-0.9
82,674	-				-1.2
82,674	-				-1.7
82,692	+				-0.5
82,692	+				+0.9
82,692	+				-1.7
82,693	-				-0.9
82,693	-				+0.2
82,693	-				-0.3
82,693	-				-1.1
82,693	-				-0.7
82,699	+				+0.1
82,699	+				+1.8
82,699	+				-0.6
82,699	+				-2.4
82,699	+				-0.5
82,700	-				+0.2
82,700	-				-2.2
82,706	+				+1.9
82,706	+				-0.9
82,706	+				-0.9
82,706	+				+0.1
82,706	+				+0.3
82,707	-				-0.4
82,707	-				+1.9
82,707	-				+0.5
82,707	-				-1.0
82,707	-				+0.5
82,720	+				+4.5
82,720	+				+0.6
82,720	+				-0.7
82,720	+				-0.5
82,721	-				+1.7
82,721	-				-1.3
82,721	-				+0.2
82,721	-				+0.2
82,721	-				+0.3
82,727	+				-2.2
82,727	+				+0.1
82,727	+				+0.3
82,727	+				-1.6
82,727	+				+0.3
82,727	+				+1.1
82,727	+				-0.5
82,727	+				+0.7
82,727	+				+0.6
82,727	+				-2.0
82,727	+				+0.5
82,728	-				+0.3
82,728	-				+0.1
82,728	-				+0.3
82,728	-				-1.9
82,728	-				-0.5
82,728	-				-0.9
82,728	-				-2.5
82,728	-				+1.1
82,729	+				-1.9
82,729	+				+1.8
82,729	+				-0.3
82,729	+				-0.6
82,729	+				+0.3
82,729	+				-0.5
82,729	+				-1.7
82,729	+				-0.7
82,729	+				+0.1
82,729	+				-0.9
82,729	+				-0.3
82,729	+				-0.3
82,729	+				-0.1
82,729	+				-1.7
82,730	-				+0.3
82,730	-				-2.2
82,730	-				-0.6
82,730	-				-0.5
82,730	-				-0.2
82,730	-				-0.8
82,730	-				+0.1
82,730	-				-0.5
82,730	-				-1.8
82,730	-				+0.4
82,730	-				-0.2
82,988	+				-3.0
83,034	+				+1.9
83,035	-				+0.4
83,039	+				+2.1
83,053	+				-1.2
83,053	+				-0.9
83,053	+				+0.7
83,054	-				+1.3
83,092	+				+2.1
83,092	+				+0.7
83,093	-				-2.1
83,093	-				+1.1
83,096	+				+1.3
83,096	+				+1.2
83,096	+				-0.0
83,096	+				+0.1
83,096	+				-1.5
83,097	-				-1.1
83,097	-				+0.3
83,097	-				-0.5
83,210	+		DZA65_RS00345	0.13	-1.2
83,210	+		DZA65_RS00345	0.13	-0.5
83,210	+		DZA65_RS00345	0.13	+1.2
83,210	+		DZA65_RS00345	0.13	+0.2
83,210	+		DZA65_RS00345	0.13	-0.1
83,211	-		DZA65_RS00345	0.13	-0.2
83,211	-		DZA65_RS00345	0.13	-0.5
83,211	-		DZA65_RS00345	0.13	-0.5
83,211	-		DZA65_RS00345	0.13	-0.7
83,211	-		DZA65_RS00345	0.13	-1.2
83,211	-		DZA65_RS00345	0.13	+0.1
83,211	-		DZA65_RS00345	0.13	+0.1
83,211	-		DZA65_RS00345	0.13	-0.3
83,226	-		DZA65_RS00345	0.14	-0.4
83,292	-		DZA65_RS00345	0.22	-0.5
83,328	+		DZA65_RS00345	0.26	-1.8
83,328	+		DZA65_RS00345	0.26	+1.1
83,328	+		DZA65_RS00345	0.26	-1.4
83,328	+		DZA65_RS00345	0.26	-0.1
83,328	+		DZA65_RS00345	0.26	+0.4
83,328	+		DZA65_RS00345	0.26	+0.9
83,328	+		DZA65_RS00345	0.26	-0.2
83,329	-		DZA65_RS00345	0.26	+0.1
83,329	-		DZA65_RS00345	0.26	-2.4
83,329	-		DZA65_RS00345	0.26	-0.3
83,329	-		DZA65_RS00345	0.26	-0.2
83,329	-		DZA65_RS00345	0.26	+1.8
83,329	-		DZA65_RS00345	0.26	-1.9
83,426	+		DZA65_RS00345	0.37	+1.5
83,427	-		DZA65_RS00345	0.37	-0.7
83,465	+		DZA65_RS00345	0.41	-1.2
83,465	+		DZA65_RS00345	0.41	-1.2
83,465	+		DZA65_RS00345	0.41	-0.2
83,466	-		DZA65_RS00345	0.41	-1.2