Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22040

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,764,322	+		DZA65_RS22035	0.12	-0.4
4,764,323	-		DZA65_RS22035	0.12	-1.6
4,764,323	-		DZA65_RS22035	0.12	-0.2
4,764,373	+		DZA65_RS22035	0.17	+0.4
4,764,373	+		DZA65_RS22035	0.17	+2.4
4,764,374	-		DZA65_RS22035	0.17	+0.3
4,764,382	+		DZA65_RS22035	0.18	-1.0
4,764,382	+		DZA65_RS22035	0.18	-0.4
4,764,382	+		DZA65_RS22035	0.18	-0.8
4,764,383	-		DZA65_RS22035	0.18	-0.8
4,764,383	-		DZA65_RS22035	0.18	-1.3
4,764,383	-		DZA65_RS22035	0.18	+1.2
4,764,499	+		DZA65_RS22035	0.28	+4.2
4,764,499	+		DZA65_RS22035	0.28	+0.2
4,764,499	+		DZA65_RS22035	0.28	+0.9
4,764,499	+		DZA65_RS22035	0.28	+0.3
4,764,499	+		DZA65_RS22035	0.28	-2.0
4,764,499	+		DZA65_RS22035	0.28	+1.2
4,764,499	+				+0.2
4,764,499	+		DZA65_RS22035	0.28	+2.2
4,764,499	+		DZA65_RS22035	0.28	-0.1
4,764,499	+		DZA65_RS22035	0.28	+0.2
4,764,499	+		DZA65_RS22035	0.28	+0.7
4,764,500	-		DZA65_RS22035	0.28	+1.6
4,764,500	-		DZA65_RS22035	0.28	+1.5
4,764,500	-		DZA65_RS22035	0.28	+0.2
4,764,500	-		DZA65_RS22035	0.28	+0.2
4,764,500	-		DZA65_RS22035	0.28	+0.7
4,764,500	-		DZA65_RS22035	0.28	-0.3
4,764,500	-		DZA65_RS22035	0.28	+0.2
4,764,500	-		DZA65_RS22035	0.28	+0.7
4,764,575	+		DZA65_RS22035	0.35	+0.7
4,764,575	+		DZA65_RS22035	0.35	-1.5
4,764,575	+		DZA65_RS22035	0.35	+1.2
4,764,575	+		DZA65_RS22035	0.35	+1.2
4,764,576	-		DZA65_RS22035	0.35	-0.3
4,764,591	-		DZA65_RS22035	0.37	+0.8
4,764,608	+		DZA65_RS22035	0.38	+1.7
4,764,609	-		DZA65_RS22035	0.38	-0.6
4,764,609	-		DZA65_RS22035	0.38	-0.3
4,764,609	-		DZA65_RS22035	0.38	+0.0
4,764,609	-		DZA65_RS22035	0.38	-2.3
4,764,625	+		DZA65_RS22035	0.40	+1.2
4,764,625	+		DZA65_RS22035	0.40	+0.3
4,764,626	-		DZA65_RS22035	0.40	+0.7
4,764,671	+		DZA65_RS22035	0.44	-2.0
4,764,677	+		DZA65_RS22035	0.44	-0.8
4,764,677	+		DZA65_RS22035	0.44	-2.9
4,764,677	+		DZA65_RS22035	0.44	-1.1
4,764,677	+		DZA65_RS22035	0.44	+0.9
4,764,677	+		DZA65_RS22035	0.44	-0.3
4,764,677	+		DZA65_RS22035	0.44	-0.6
4,764,678	-		DZA65_RS22035	0.45	-0.6
4,764,678	-		DZA65_RS22035	0.45	+0.3
4,764,678	-		DZA65_RS22035	0.45	-0.8
4,764,678	-		DZA65_RS22035	0.45	-0.3
4,764,678	-		DZA65_RS22035	0.45	-0.7
4,764,678	-		DZA65_RS22035	0.45	-1.5
4,764,678	-		DZA65_RS22035	0.45	-1.4
4,764,983	+		DZA65_RS22035	0.72	-0.2
4,765,012	+		DZA65_RS22035	0.75	-0.3
4,765,012	+		DZA65_RS22035	0.75	-0.7
4,765,012	+		DZA65_RS22035	0.75	+1.2
4,765,013	-		DZA65_RS22035	0.75	-0.3
4,765,013	-		DZA65_RS22035	0.75	+1.2
4,765,030	+		DZA65_RS22035	0.76	+0.6
4,765,030	+		DZA65_RS22035	0.76	-2.0
4,765,040	-		DZA65_RS22035	0.77	+0.6
4,765,112	+		DZA65_RS22035	0.84	+0.9
4,765,112	+		DZA65_RS22035	0.84	-0.4
4,765,112	+		DZA65_RS22035	0.84	-0.0
4,765,112	+		DZA65_RS22035	0.84	+0.2
4,765,112	+		DZA65_RS22035	0.84	+0.9
4,765,112	+		DZA65_RS22035	0.84	-1.7
4,765,112	+		DZA65_RS22035	0.84	+0.5
4,765,113	-		DZA65_RS22035	0.84	-0.1
4,765,113	-		DZA65_RS22035	0.84	+1.7
4,765,132	+		DZA65_RS22035	0.86	-0.8
4,765,132	+		DZA65_RS22035	0.86	+0.4
4,765,132	+		DZA65_RS22035	0.86	-0.4
4,765,132	+		DZA65_RS22035	0.86	+1.4
4,765,132	+		DZA65_RS22035	0.86	+0.1
4,765,132	+		DZA65_RS22035	0.86	-1.3
4,765,132	+		DZA65_RS22035	0.86	-0.5
4,765,132	+		DZA65_RS22035	0.86	-0.2
4,765,132	+		DZA65_RS22035	0.86	-0.8
4,765,133	-		DZA65_RS22035	0.86	+1.2
4,765,133	-		DZA65_RS22035	0.86	-1.4
4,765,133	-		DZA65_RS22035	0.86	-0.1
4,765,133	-		DZA65_RS22035	0.86	-2.2
4,765,133	-		DZA65_RS22035	0.86	+0.8
4,765,133	-		DZA65_RS22035	0.86	-1.2
4,765,133	-		DZA65_RS22035	0.86	+0.2
4,765,133	-		DZA65_RS22035	0.86	-0.5
4,765,133	-		DZA65_RS22035	0.86	+0.0
4,765,133	-		DZA65_RS22035	0.86	+0.6
4,765,133	-		DZA65_RS22035	0.86	-0.6
4,765,133	-		DZA65_RS22035	0.86	+1.2
4,765,160	+		DZA65_RS22035	0.88	-1.6
4,765,161	-		DZA65_RS22035	0.88	-0.4
4,765,263	+				+0.5
4,765,303	-				+2.7
4,765,303	-				-0.6
4,765,303	-				-1.2
4,765,331	+				+0.4
4,765,331	+				+0.4
4,765,331	+				-1.4
4,765,331	+				-0.6
4,765,331	+				-0.8
4,765,332	-				-0.5
4,765,332	-				-1.0
4,765,332	-				+0.6
4,765,332	-				-1.4
4,765,332	-				+0.0
4,765,332	-				+0.8
4,765,332	-				+0.2
4,765,332	-				+0.6
4,765,332	-				-1.2
4,765,332	-				+0.6
4,765,349	+				-0.4
4,765,349	+				+0.8
4,765,349	+				+0.4
4,765,349	+				+1.2
4,765,349	+				+2.3
4,765,350	-				-1.2
4,765,350	-				+0.2
4,765,350	-				+0.3
4,765,350	-				-1.6
4,765,371	+				-0.8
4,765,372	-				+0.4
4,765,372	-				-0.5
4,765,373	+				+0.4
4,765,373	+				+2.2
4,765,373	+				-0.8
4,765,373	+				-0.8
4,765,373	+				-2.5
4,765,373	+				+2.0
4,765,373	+				+0.4
4,765,373	+				+2.0
4,765,373	+				-1.6
4,765,373	+				+1.2
4,765,373	+				-0.4
4,765,373	+				+0.1
4,765,373	+				-1.8
4,765,373	+				-1.3
4,765,373	+				+0.5
4,765,373	+				-0.4
4,765,373	+				+0.4
4,765,373	+				-1.4
4,765,373	+				-2.0
4,765,373	+				-0.9
4,765,373	+				+1.2
4,765,373	+				-0.0
4,765,373	+				+0.6
4,765,374	-				-1.3
4,765,374	-				-0.5
4,765,374	-				+0.4
4,765,374	-				+0.2
4,765,374	-				-0.8
4,765,374	-				+1.7
4,765,374	-				+2.0
4,765,374	-				+0.1
4,765,374	-				-0.4
4,765,374	-				+0.9
4,765,374	-				+0.2
4,765,374	-				-0.7
4,765,374	-				-1.2
4,765,374	-				-0.2
4,765,374	-				+0.1
4,765,374	-				+0.4
4,765,443	-		DZA65_RS22040	0.14	+0.2
4,765,443	-		DZA65_RS22040	0.14	+0.5
4,765,496	+		DZA65_RS22040	0.19	-0.2
4,765,497	-		DZA65_RS22040	0.19	+0.2
4,765,497	-		DZA65_RS22040	0.19	-0.8
4,765,539	+		DZA65_RS22040	0.23	+0.0
4,765,686	+		DZA65_RS22040	0.37	-0.3
4,765,686	+		DZA65_RS22040	0.37	+0.9
4,765,686	+		DZA65_RS22040	0.37	+0.4
4,765,686	+		DZA65_RS22040	0.37	+0.2
4,765,686	+		DZA65_RS22040	0.37	-1.4
4,765,686	+		DZA65_RS22040	0.37	-0.2
4,765,686	+		DZA65_RS22040	0.37	-0.1
4,765,686	+		DZA65_RS22040	0.37	+0.6
4,765,686	+		DZA65_RS22040	0.37	-0.4
4,765,686	+		DZA65_RS22040	0.37	+1.2
4,765,687	-		DZA65_RS22040	0.38	+0.8
4,765,687	-		DZA65_RS22040	0.38	+0.2
4,765,687	-		DZA65_RS22040	0.38	+0.4
4,765,687	-		DZA65_RS22040	0.38	-0.0
4,765,687	-		DZA65_RS22040	0.38	+0.8
4,765,687	-		DZA65_RS22040	0.38	-0.1
4,765,736	+		DZA65_RS22040	0.42	-0.5
4,765,737	-		DZA65_RS22040	0.42	-0.4
4,765,747	-		DZA65_RS22040	0.43	-0.3
4,765,848	-		DZA65_RS22040	0.53	-1.8
4,765,911	+		DZA65_RS22040	0.59	+0.8
4,765,912	-		DZA65_RS22040	0.59	-0.5
4,765,912	-		DZA65_RS22040	0.59	-1.7
4,765,951	+		DZA65_RS22040	0.63	-1.4
4,765,951	+		DZA65_RS22040	0.63	-0.3
4,765,952	-		DZA65_RS22040	0.63	-1.2
4,765,952	-		DZA65_RS22040	0.63	+0.1
4,765,952	-		DZA65_RS22040	0.63	+3.5
4,765,952	-		DZA65_RS22040	0.63	-0.2
4,765,991	+		DZA65_RS22040	0.67	+2.0
4,765,991	+		DZA65_RS22040	0.67	+0.7
4,765,992	-		DZA65_RS22040	0.67	-0.1
4,766,123	+		DZA65_RS22040	0.79	-0.8
4,766,165	+		DZA65_RS22040	0.83	+0.4
4,766,166	-		DZA65_RS22040	0.83	-0.7
4,766,216	+		DZA65_RS22040	0.88	-1.0
4,766,216	+		DZA65_RS22040	0.88	-0.8
4,766,216	+		DZA65_RS22040	0.88	-0.8
4,766,216	+		DZA65_RS22040	0.88	-0.6
4,766,216	+		DZA65_RS22040	0.88	-1.2
4,766,216	+		DZA65_RS22040	0.88	-1.8
4,766,217	-		DZA65_RS22040	0.88	-1.6
4,766,217	-		DZA65_RS22040	0.88	-0.8
4,766,217	-				+0.6
4,766,217	-		DZA65_RS22040	0.88	+0.4
4,766,217	-		DZA65_RS22040	0.88	-1.2
4,766,217	-		DZA65_RS22040	0.88	+0.4
4,766,217	-		DZA65_RS22040	0.88	-0.0
4,766,456	-		DZA65_RS22045	0.13	-0.0
4,766,461	+		DZA65_RS22045	0.14	+0.3
4,766,494	+		DZA65_RS22045	0.17	-1.0
4,766,494	+		DZA65_RS22045	0.17	-0.6
4,766,494	+		DZA65_RS22045	0.17	-2.2
4,766,494	+		DZA65_RS22045	0.17	+0.7
4,766,495	-		DZA65_RS22045	0.17	+0.7
4,766,495	-		DZA65_RS22045	0.17	-1.8
4,766,503	+		DZA65_RS22045	0.18	+0.1
4,766,503	+		DZA65_RS22045	0.18	-0.4
4,766,503	+		DZA65_RS22045	0.18	+2.2
4,766,503	+		DZA65_RS22045	0.18	+0.8
4,766,503	+		DZA65_RS22045	0.18	-0.8
4,766,503	+		DZA65_RS22045	0.18	-0.3
4,766,503	+		DZA65_RS22045	0.18	-0.8
4,766,504	-		DZA65_RS22045	0.18	+1.2
4,766,504	-		DZA65_RS22045	0.18	+2.3
4,766,504	-		DZA65_RS22045	0.18	-1.4
4,766,504	-		DZA65_RS22045	0.18	+0.8
4,766,504	-		DZA65_RS22045	0.18	-0.3
4,766,504	-		DZA65_RS22045	0.18	+1.2
4,766,504	-		DZA65_RS22045	0.18	+0.2
4,766,504	-		DZA65_RS22045	0.18	-0.2
4,766,518	+		DZA65_RS22045	0.20	+1.2
4,766,518	+		DZA65_RS22045	0.20	+1.2
4,766,518	+		DZA65_RS22045	0.20	-0.8
4,766,519	-		DZA65_RS22045	0.20	-0.1
4,766,519	-		DZA65_RS22045	0.20	+0.4
4,766,519	-		DZA65_RS22045	0.20	+0.1
4,766,551	+		DZA65_RS22045	0.23	-1.6
4,766,551	+		DZA65_RS22045	0.23	+0.2
4,766,551	+		DZA65_RS22045	0.23	+0.2
4,766,551	+		DZA65_RS22045	0.23	-0.8
4,766,551	+		DZA65_RS22045	0.23	+0.4
4,766,551	+		DZA65_RS22045	0.23	-0.8
4,766,551	+		DZA65_RS22045	0.23	+0.1
4,766,551	+		DZA65_RS22045	0.23	+1.0
4,766,552	-		DZA65_RS22045	0.23	+0.8
4,766,552	-		DZA65_RS22045	0.23	-0.1
4,766,552	-		DZA65_RS22045	0.23	-0.6
4,766,552	-		DZA65_RS22045	0.23	-1.8
4,766,552	-		DZA65_RS22045	0.23	+1.5
4,766,552	-		DZA65_RS22045	0.23	-0.3
4,766,552	-		DZA65_RS22045	0.23	-1.0
4,766,552	-		DZA65_RS22045	0.23	-0.0
4,766,552	-		DZA65_RS22045	0.23	+0.1
4,766,552	-		DZA65_RS22045	0.23	-0.7
4,766,557	+		DZA65_RS22045	0.24	-0.2
4,766,557	+		DZA65_RS22045	0.24	-0.2
4,766,557	+		DZA65_RS22045	0.24	-1.8
4,766,557	+		DZA65_RS22045	0.24	+1.5
4,766,557	+		DZA65_RS22045	0.24	-1.2
4,766,557	+		DZA65_RS22045	0.24	+0.0
4,766,558	-		DZA65_RS22045	0.24	+3.3
4,766,558	-		DZA65_RS22045	0.24	-0.6
4,766,558	-		DZA65_RS22045	0.24	-1.1
4,766,558	-		DZA65_RS22045	0.24	-0.4
4,766,558	-		DZA65_RS22045	0.24	-0.3
4,766,584	+		DZA65_RS22045	0.27	-0.4
4,766,584	+		DZA65_RS22045	0.27	-1.2
4,766,585	-		DZA65_RS22045	0.27	+2.2
4,766,585	-		DZA65_RS22045	0.27	+0.6
4,766,614	-		DZA65_RS22045	0.30	+1.4
4,766,614	-		DZA65_RS22045	0.30	+0.2
4,766,769	+		DZA65_RS22045	0.47	+0.2
4,766,770	-		DZA65_RS22045	0.47	+1.0
4,766,770	-		DZA65_RS22045	0.47	+0.2
4,766,770	-		DZA65_RS22045	0.47	-0.2
4,766,795	+		DZA65_RS22045	0.50	-1.8
4,766,795	+		DZA65_RS22045	0.50	-0.0
4,766,884	+		DZA65_RS22045	0.60	-0.2
4,766,885	-		DZA65_RS22045	0.60	+0.2
4,766,885	-		DZA65_RS22045	0.60	-1.2
4,767,011	+		DZA65_RS22045	0.73	-0.9
4,767,022	+		DZA65_RS22045	0.75	-0.4
4,767,022	+		DZA65_RS22045	0.75	+0.2
4,767,022	+		DZA65_RS22045	0.75	-1.6
4,767,022	+		DZA65_RS22045	0.75	-0.8
4,767,022	+		DZA65_RS22045	0.75	+1.2
4,767,022	+		DZA65_RS22045	0.75	+0.2
4,767,022	+		DZA65_RS22045	0.75	-0.0
4,767,022	+		DZA65_RS22045	0.75	-0.1
4,767,022	+		DZA65_RS22045	0.75	+1.2
4,767,023	-		DZA65_RS22045	0.75	+1.7
4,767,023	-		DZA65_RS22045	0.75	-1.6
4,767,023	-		DZA65_RS22045	0.75	+0.1
4,767,023	-		DZA65_RS22045	0.75	-1.9
4,767,023	-		DZA65_RS22045	0.75	+1.3
4,767,023	-		DZA65_RS22045	0.75	-0.7
4,767,023	-		DZA65_RS22045	0.75	+1.5
4,767,105	+				+0.6
4,767,105	+		DZA65_RS22045	0.84	+0.6
4,767,105	+		DZA65_RS22045	0.84	+0.8
4,767,105	+		DZA65_RS22045	0.84	-0.4
4,767,105	+		DZA65_RS22045	0.84	-1.3
4,767,105	+		DZA65_RS22045	0.84	-0.6
4,767,105	+		DZA65_RS22045	0.84	+0.7
4,767,106	-		DZA65_RS22045	0.84	+0.4
4,767,106	-		DZA65_RS22045	0.84	+0.2
4,767,106	-		DZA65_RS22045	0.84	-0.0
4,767,106	-		DZA65_RS22045	0.84	+1.2
4,767,106	-		DZA65_RS22045	0.84	-0.3
4,767,106	-		DZA65_RS22045	0.84	-1.5
4,767,106	-		DZA65_RS22045	0.84	+0.4
4,767,254	+				-1.8
4,767,254	+				-1.0
4,767,255	-				+0.3
4,767,255	-				-0.7