Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21365

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,621,686	+		DZA65_RS21360	0.47	-0.7
4,621,686	+		DZA65_RS21360	0.47	-0.8
4,621,687	-		DZA65_RS21360	0.47	+0.6
4,621,687	-		DZA65_RS21360	0.47	+0.6
4,621,687	-		DZA65_RS21360	0.47	-0.0
4,621,687	-		DZA65_RS21360	0.47	-0.4
4,621,725	-		DZA65_RS21360	0.50	-0.5
4,621,746	-		DZA65_RS21360	0.52	-1.3
4,621,746	-		DZA65_RS21360	0.52	-1.7
4,621,788	+		DZA65_RS21360	0.55	+0.8
4,621,792	+		DZA65_RS21360	0.56	-0.4
4,621,792	+		DZA65_RS21360	0.56	-0.8
4,621,793	-		DZA65_RS21360	0.56	+0.0
4,621,793	-		DZA65_RS21360	0.56	-0.2
4,621,793	-		DZA65_RS21360	0.56	+0.5
4,621,810	+		DZA65_RS21360	0.57	+0.6
4,621,811	-		DZA65_RS21360	0.57	-0.8
4,621,811	-		DZA65_RS21360	0.57	-0.4
4,621,828	+		DZA65_RS21360	0.59	+0.6
4,621,828	+		DZA65_RS21360	0.59	-0.3
4,621,828	+		DZA65_RS21360	0.59	-0.5
4,621,829	-		DZA65_RS21360	0.59	-0.6
4,621,829	-		DZA65_RS21360	0.59	-0.3
4,621,869	+		DZA65_RS21360	0.62	-0.1
4,621,890	+		DZA65_RS21360	0.64	-0.2
4,621,891	-		DZA65_RS21360	0.64	+0.6
4,621,952	-		DZA65_RS21360	0.69	+0.8
4,621,952	-		DZA65_RS21360	0.69	+0.5
4,621,952	-		DZA65_RS21360	0.69	+1.4
4,622,007	+		DZA65_RS21360	0.73	-0.0
4,622,007	+		DZA65_RS21360	0.73	+0.5
4,622,007	+		DZA65_RS21360	0.73	+0.9
4,622,007	+		DZA65_RS21360	0.73	+1.5
4,622,007	+		DZA65_RS21360	0.73	-0.2
4,622,007	+		DZA65_RS21360	0.73	-0.8
4,622,007	+		DZA65_RS21360	0.73	-0.2
4,622,007	+		DZA65_RS21360	0.73	-0.0
4,622,008	-		DZA65_RS21360	0.73	-0.4
4,622,008	-		DZA65_RS21360	0.73	+1.3
4,622,008	-		DZA65_RS21360	0.73	+1.3
4,622,008	-		DZA65_RS21360	0.73	+0.1
4,622,008	-		DZA65_RS21360	0.73	-1.5
4,622,008	-		DZA65_RS21360	0.73	+0.2
4,622,008	-		DZA65_RS21360	0.73	-0.5
4,622,008	-		DZA65_RS21360	0.73	-1.4
4,622,008	-		DZA65_RS21360	0.73	-0.0
4,622,008	-		DZA65_RS21360	0.73	-0.4
4,622,019	-		DZA65_RS21360	0.74	+0.0
4,622,019	-		DZA65_RS21360	0.74	+0.8
4,622,030	+		DZA65_RS21360	0.75	+1.6
4,622,030	+		DZA65_RS21360	0.75	-0.1
4,622,035	+		DZA65_RS21360	0.76	+0.7
4,622,036	-		DZA65_RS21360	0.76	-0.1
4,622,036	-		DZA65_RS21360	0.76	-2.0
4,622,039	-		DZA65_RS21360	0.76	+1.2
4,622,086	+		DZA65_RS21360	0.80	-0.2
4,622,179	+		DZA65_RS21360	0.88	-1.8
4,622,302	+				-0.4
4,622,302	+				-0.8
4,622,302	+				+3.5
4,622,302	+				+0.2
4,622,302	+				+0.0
4,622,302	+				-0.3
4,622,302	+				-0.4
4,622,302	+				-0.6
4,622,302	+				-1.4
4,622,303	-				-0.1
4,622,303	-				-2.2
4,622,303	-				+1.0
4,622,303	-				+0.6
4,622,303	-				-0.1
4,622,303	-				+0.3
4,622,303	-				+0.7
4,622,303	-				-1.0
4,622,303	-				-0.3
4,622,303	-				-1.5
4,622,303	-				+0.3
4,622,303	-				+0.9
4,622,303	-				+0.4
4,622,303	-				-0.8
4,622,345	-				-0.3
4,622,426	+				-0.3
4,622,426	+				+1.3
4,622,427	-				+0.7
4,622,427	-				-1.8
4,622,443	-				-0.2
4,622,450	-				+0.3
4,622,454	-				+0.2
4,622,454	-				+0.4
4,622,490	+				+2.1
4,622,490	+				-1.5
4,622,490	+				+2.5
4,622,490	+				-1.2
4,622,490	+				+0.3
4,622,490	+				-0.2
4,622,490	+				-0.2
4,622,490	+				+0.3
4,622,491	-				-2.1
4,622,491	-				+0.9
4,622,491	-				-1.2
4,622,491	-				+0.6
4,622,562	-				-0.6
4,622,562	-				+0.1
4,622,562	-				+1.4
4,622,659	-				+0.2
4,622,659	-				+0.7
4,622,659	-				-1.4
4,622,659	-				-0.4
4,622,699	+				-1.2
4,622,699	+				+0.6
4,622,699	+				-1.6
4,622,699	+				-0.6
4,622,699	+				-1.2
4,622,700	-				-0.6
4,622,700	-				-0.4
4,622,700	-				-0.6
4,622,700	-				-0.8
4,622,700	-				-0.2
4,622,719	+				+1.7
4,622,752	+				-0.7
4,622,752	+				+0.8
4,622,753	-				-1.4
4,622,758	+				+0.2
4,622,759	-				-2.3
4,622,826	+				-0.4
4,622,826	+				+0.4
4,622,826	+				+0.0
4,622,830	+				+0.2
4,622,830	+				+0.7
4,622,830	+				-0.6
4,622,830	+				+0.2
4,622,830	+				-0.4
4,622,831	-				-0.1
4,622,831	-				-1.3
4,622,831	-				+0.8
4,622,831	-				+0.2
4,622,831	-				+0.5
4,622,831	-				+0.8
4,622,831	-				+0.8
4,622,831	-				+1.2
4,622,831	-				+1.4
4,622,921	+		DZA65_RS21365	0.16	+1.9
4,622,921	+		DZA65_RS21365	0.16	-1.3
4,622,990	+		DZA65_RS21365	0.20	-0.1
4,623,118	+		DZA65_RS21365	0.29	-0.1
4,623,119	-		DZA65_RS21365	0.29	+1.6
4,623,119	-		DZA65_RS21365	0.29	+0.2
4,623,119	-		DZA65_RS21365	0.29	-0.4
4,623,218	-		DZA65_RS21365	0.35	-0.2
4,623,218	-		DZA65_RS21365	0.35	+0.7
4,623,238	+		DZA65_RS21365	0.36	-0.3
4,623,238	+		DZA65_RS21365	0.36	+1.2
4,623,238	+		DZA65_RS21365	0.36	+1.9
4,623,238	+		DZA65_RS21365	0.36	+0.8
4,623,238	+		DZA65_RS21365	0.36	+0.4
4,623,246	+		DZA65_RS21365	0.37	+0.6
4,623,283	+		DZA65_RS21365	0.39	-0.6
4,623,284	-		DZA65_RS21365	0.39	+0.2
4,623,319	+		DZA65_RS21365	0.42	+0.3
4,623,319	+		DZA65_RS21365	0.42	-0.8
4,623,319	+		DZA65_RS21365	0.42	+0.6
4,623,319	+		DZA65_RS21365	0.42	+0.4
4,623,319	+		DZA65_RS21365	0.42	+0.2
4,623,319	+		DZA65_RS21365	0.42	-0.4
4,623,320	-		DZA65_RS21365	0.42	+4.8
4,623,320	-		DZA65_RS21365	0.42	-0.3
4,623,320	-		DZA65_RS21365	0.42	+1.8
4,623,320	-		DZA65_RS21365	0.42	+0.2
4,623,320	-		DZA65_RS21365	0.42	+1.0
4,623,320	-		DZA65_RS21365	0.42	-0.8
4,623,327	+		DZA65_RS21365	0.42	+0.0
4,623,327	+		DZA65_RS21365	0.42	-0.8
4,623,328	-		DZA65_RS21365	0.42	+0.3
4,623,328	-		DZA65_RS21365	0.42	+0.1
4,623,328	-		DZA65_RS21365	0.42	-0.4
4,623,441	+		DZA65_RS21365	0.50	+1.3
4,623,441	+		DZA65_RS21365	0.50	+0.5
4,623,441	+		DZA65_RS21365	0.50	+1.4
4,623,441	+		DZA65_RS21365	0.50	-1.3
4,623,441	+		DZA65_RS21365	0.50	+0.2
4,623,441	+		DZA65_RS21365	0.50	-0.3
4,623,441	+		DZA65_RS21365	0.50	-1.4
4,623,441	+		DZA65_RS21365	0.50	-0.6
4,623,442	-		DZA65_RS21365	0.50	-0.8
4,623,442	-		DZA65_RS21365	0.50	+0.3
4,623,442	-		DZA65_RS21365	0.50	+0.4
4,623,442	-		DZA65_RS21365	0.50	-0.1
4,623,442	-		DZA65_RS21365	0.50	+0.6
4,623,442	-		DZA65_RS21365	0.50	-1.4
4,623,442	-		DZA65_RS21365	0.50	+1.2
4,623,442	-		DZA65_RS21365	0.50	-1.2
4,623,445	+		DZA65_RS21365	0.50	-0.4
4,623,445	+		DZA65_RS21365	0.50	-0.1
4,623,445	+		DZA65_RS21365	0.50	+1.5
4,623,445	+		DZA65_RS21365	0.50	-1.7
4,623,445	+				+1.7
4,623,445	+		DZA65_RS21365	0.50	-0.4
4,623,446	-		DZA65_RS21365	0.50	+1.2
4,623,446	-		DZA65_RS21365	0.50	-0.4
4,623,446	-		DZA65_RS21365	0.50	+3.0
4,623,446	-		DZA65_RS21365	0.50	-0.0
4,623,446	-		DZA65_RS21365	0.50	+1.2
4,623,446	-		DZA65_RS21365	0.50	-0.4
4,623,446	-		DZA65_RS21365	0.50	-1.3
4,623,446	-		DZA65_RS21365	0.50	+0.6
4,623,446	-		DZA65_RS21365	0.50	+0.4
4,623,446	-		DZA65_RS21365	0.50	-0.4
4,623,446	-		DZA65_RS21365	0.50	-0.6
4,623,511	+		DZA65_RS21365	0.54	-1.3
4,623,512	-		DZA65_RS21365	0.54	-0.7
4,623,568	+		DZA65_RS21365	0.58	+1.7
4,623,568	+		DZA65_RS21365	0.58	+1.4
4,623,568	+		DZA65_RS21365	0.58	+0.4
4,623,568	+		DZA65_RS21365	0.58	-1.5
4,623,568	+		DZA65_RS21365	0.58	+1.7
4,623,568	+		DZA65_RS21365	0.58	-0.8
4,623,568	+		DZA65_RS21365	0.58	-0.2
4,623,568	+		DZA65_RS21365	0.58	-2.2
4,623,568	+		DZA65_RS21365	0.58	-0.1
4,623,568	+		DZA65_RS21365	0.58	+0.5
4,623,568	+		DZA65_RS21365	0.58	-0.8
4,623,568	+		DZA65_RS21365	0.58	+0.3
4,623,568	+		DZA65_RS21365	0.58	+0.8
4,623,568	+		DZA65_RS21365	0.58	+0.4
4,623,568	+		DZA65_RS21365	0.58	-0.9
4,623,568	+		DZA65_RS21365	0.58	+0.5
4,623,568	+		DZA65_RS21365	0.58	-0.4
4,623,568	+		DZA65_RS21365	0.58	+0.6
4,623,569	-		DZA65_RS21365	0.58	-0.5
4,623,569	-		DZA65_RS21365	0.58	-0.2
4,623,569	-		DZA65_RS21365	0.58	-1.6
4,623,569	-		DZA65_RS21365	0.58	-1.3
4,623,569	-		DZA65_RS21365	0.58	+0.5
4,623,569	-		DZA65_RS21365	0.58	+0.7
4,623,569	-		DZA65_RS21365	0.58	-2.3
4,623,682	-		DZA65_RS21365	0.66	+1.2
4,623,740	+		DZA65_RS21365	0.69	+0.7
4,623,740	+		DZA65_RS21365	0.69	+0.7
4,623,760	+		DZA65_RS21365	0.71	+2.3
4,623,760	+		DZA65_RS21365	0.71	-0.4
4,623,760	+		DZA65_RS21365	0.71	-1.0
4,623,761	-		DZA65_RS21365	0.71	-1.6
4,623,761	-		DZA65_RS21365	0.71	-0.4
4,623,786	-		DZA65_RS21365	0.72	-1.3
4,623,786	-		DZA65_RS21365	0.72	-0.4
4,623,828	+		DZA65_RS21365	0.75	-0.8
4,623,828	+		DZA65_RS21365	0.75	+0.8
4,623,840	+		DZA65_RS21365	0.76	+0.6
4,623,840	+		DZA65_RS21365	0.76	+0.6
4,623,840	+		DZA65_RS21365	0.76	-0.8
4,623,840	+		DZA65_RS21365	0.76	-0.3
4,623,840	+		DZA65_RS21365	0.76	+0.2
4,623,840	+		DZA65_RS21365	0.76	+0.5
4,623,840	+		DZA65_RS21365	0.76	+1.5
4,623,840	+		DZA65_RS21365	0.76	-1.2
4,623,840	+		DZA65_RS21365	0.76	-0.3
4,623,840	+		DZA65_RS21365	0.76	-0.6
4,623,841	-		DZA65_RS21365	0.76	-0.7
4,623,841	-		DZA65_RS21365	0.76	-0.2
4,623,841	-		DZA65_RS21365	0.76	-1.0
4,623,841	-		DZA65_RS21365	0.76	+0.2
4,623,841	-		DZA65_RS21365	0.76	-2.2
4,623,841	-		DZA65_RS21365	0.76	-1.0
4,623,880	+		DZA65_RS21365	0.79	-0.2
4,623,880	+		DZA65_RS21365	0.79	+0.9
4,623,880	+		DZA65_RS21365	0.79	+0.1
4,623,880	+		DZA65_RS21365	0.79	+0.4
4,623,880	+		DZA65_RS21365	0.79	-1.6
4,623,881	-		DZA65_RS21365	0.79	+0.5
4,623,904	-		DZA65_RS21365	0.80	-0.4
4,623,939	+		DZA65_RS21365	0.82	+0.2
4,623,939	+		DZA65_RS21365	0.82	-0.9
4,623,939	+		DZA65_RS21365	0.82	-1.2
4,624,022	+		DZA65_RS21365	0.88	-0.2
4,624,022	+		DZA65_RS21365	0.88	+0.4
4,624,022	+		DZA65_RS21365	0.88	+0.2
4,624,047	+		DZA65_RS21365	0.89	-0.6
4,624,047	+		DZA65_RS21365	0.89	-1.0
4,624,047	+		DZA65_RS21365	0.89	+0.8
4,624,048	-		DZA65_RS21365	0.90	+2.3
4,624,048	-		DZA65_RS21365	0.90	+0.5
4,624,077	+				-0.8
4,624,132	+				+0.9
4,624,133	-				+1.9
4,624,133	-				-0.3
4,624,157	+				-0.0
4,624,157	+				-0.3
4,624,157	+				-1.0
4,624,157	+				-0.2
4,624,157	+				-1.3
4,624,158	-				-2.2
4,624,165	+				+0.5
4,624,165	+				+0.4
4,624,165	+				-0.8
4,624,165	+				+2.4
4,624,165	+				+1.3
4,624,166	-				-0.4
4,624,166	-				+0.2
4,624,166	-				-0.2
4,624,166	-				+1.2
4,624,217	+				-1.0
4,624,217	+				+0.2
4,624,218	-				+0.5
4,624,226	+				-1.8
4,624,226	+				+0.1
4,624,227	-				-2.2
4,624,266	-				-0.2
4,624,266	-				-0.3
4,624,266	-				-0.6
4,624,266	-				+0.7
4,624,271	+				-0.4
4,624,289	+				+1.8
4,624,289	+				-0.8
4,624,290	-				+1.2
4,624,290	-				-0.1
4,624,290	-				-0.3
4,624,332	+		DZA65_RS21370	0.18	-0.4
4,624,333	-		DZA65_RS21370	0.19	-0.6
4,624,357	-		DZA65_RS21370	0.26	-1.5
4,624,365	+		DZA65_RS21370	0.28	-1.4
4,624,366	-		DZA65_RS21370	0.28	-0.8
4,624,366	-		DZA65_RS21370	0.28	-0.6
4,624,366	-		DZA65_RS21370	0.28	+0.4
4,624,367	+		DZA65_RS21370	0.29	+1.2
4,624,367	+		DZA65_RS21370	0.29	-0.6
4,624,367	+		DZA65_RS21370	0.29	-0.4
4,624,367	+		DZA65_RS21370	0.29	+0.2
4,624,367	+		DZA65_RS21370	0.29	+2.2
4,624,367	+		DZA65_RS21370	0.29	-0.0
4,624,367	+		DZA65_RS21370	0.29	+0.5
4,624,367	+		DZA65_RS21370	0.29	+0.6
4,624,367	+		DZA65_RS21370	0.29	-0.6
4,624,367	+		DZA65_RS21370	0.29	-0.0
4,624,367	+		DZA65_RS21370	0.29	-1.8
4,624,367	+		DZA65_RS21370	0.29	-0.5
4,624,368	-		DZA65_RS21370	0.29	-0.1
4,624,368	-		DZA65_RS21370	0.29	+0.9
4,624,368	-		DZA65_RS21370	0.29	-0.9
4,624,368	-		DZA65_RS21370	0.29	+0.5
4,624,368	-		DZA65_RS21370	0.29	-1.0
4,624,368	-		DZA65_RS21370	0.29	+0.4
4,624,368	-		DZA65_RS21370	0.29	+0.2
4,624,368	-		DZA65_RS21370	0.29	+0.2
4,624,368	-		DZA65_RS21370	0.29	-1.8
4,624,368	-		DZA65_RS21370	0.29	-1.1
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4,624,482	+		DZA65_RS21370	0.63	+0.3
4,624,483	-		DZA65_RS21370	0.63	-0.8
4,624,483	-		DZA65_RS21370	0.63	-2.8
4,624,527	+		DZA65_RS21370	0.76	+1.2
4,624,559	+		DZA65_RS21370	0.85	-1.3
4,624,559	+		DZA65_RS21370	0.85	+0.4
4,624,570	-		DZA65_RS21370	0.88	-1.2
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4,624,611	+				+0.2
4,624,611	+				-0.7
4,624,612	-				+0.6
4,624,612	-				-1.5
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4,624,621	+				-0.3
4,624,622	-				+3.3
4,624,622	-				+1.7
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4,624,622	-				+1.2
4,624,630	+				+1.9
4,624,630	+				-1.4
4,624,631	-				-1.4
4,624,645	+				+0.6
4,624,657	+				-0.6
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4,624,660	+				+0.3
4,624,660	+				-0.1
4,624,660	+				-0.9
4,624,660	+				+2.2
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4,624,833	-		DZA65_RS21375	0.13	-0.9
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