Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20120

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,358,601	+				-1.5
4,358,675	-				-2.9
4,358,796	+		DZA65_RS20115	0.21	+1.7
4,358,796	+		DZA65_RS20115	0.21	+0.7
4,358,797	-		DZA65_RS20115	0.21	+0.2
4,358,797	-		DZA65_RS20115	0.21	-2.1
4,358,836	+		DZA65_RS20115	0.25	-0.5
4,358,836	+		DZA65_RS20115	0.25	+0.3
4,358,836	+		DZA65_RS20115	0.25	+0.4
4,358,836	+		DZA65_RS20115	0.25	+0.6
4,358,837	-		DZA65_RS20115	0.25	+0.8
4,358,837	-		DZA65_RS20115	0.25	+0.5
4,358,848	+		DZA65_RS20115	0.26	-1.9
4,358,848	+		DZA65_RS20115	0.26	+0.4
4,358,848	+		DZA65_RS20115	0.26	-0.1
4,358,848	+		DZA65_RS20115	0.26	-0.4
4,358,848	+		DZA65_RS20115	0.26	-0.5
4,358,848	+		DZA65_RS20115	0.26	+0.1
4,358,848	+		DZA65_RS20115	0.26	+0.7
4,358,849	-		DZA65_RS20115	0.26	+0.1
4,358,849	-		DZA65_RS20115	0.26	+0.4
4,358,849	-		DZA65_RS20115	0.26	+0.2
4,358,849	-		DZA65_RS20115	0.26	-0.9
4,358,849	-		DZA65_RS20115	0.26	-0.3
4,358,849	-		DZA65_RS20115	0.26	+0.1
4,358,852	+		DZA65_RS20115	0.27	+1.1
4,358,852	+		DZA65_RS20115	0.27	+1.2
4,358,868	+		DZA65_RS20115	0.28	+0.4
4,358,868	+		DZA65_RS20115	0.28	+1.4
4,358,883	+		DZA65_RS20115	0.30	+0.4
4,358,883	+		DZA65_RS20115	0.30	-0.2
4,358,883	+		DZA65_RS20115	0.30	+0.4
4,358,883	+		DZA65_RS20115	0.30	-0.9
4,358,883	+		DZA65_RS20115	0.30	+1.2
4,358,883	+		DZA65_RS20115	0.30	+0.2
4,358,884	-		DZA65_RS20115	0.30	+0.4
4,358,884	-		DZA65_RS20115	0.30	-0.8
4,358,884	-		DZA65_RS20115	0.30	+0.2
4,358,884	-		DZA65_RS20115	0.30	-0.7
4,358,884	-		DZA65_RS20115	0.30	+0.7
4,358,884	-		DZA65_RS20115	0.30	+0.1
4,358,904	+		DZA65_RS20115	0.32	+2.2
4,358,904	+		DZA65_RS20115	0.32	-0.3
4,358,904	+		DZA65_RS20115	0.32	-0.0
4,358,905	-		DZA65_RS20115	0.32	-0.3
4,358,905	-		DZA65_RS20115	0.32	-0.1
4,358,905	-		DZA65_RS20115	0.32	+0.3
4,358,914	+		DZA65_RS20115	0.33	+0.9
4,359,115	+		DZA65_RS20115	0.54	-0.2
4,359,135	+		DZA65_RS20115	0.56	+0.4
4,359,161	+		DZA65_RS20115	0.59	-0.5
4,359,162	-		DZA65_RS20115	0.59	+1.5
4,359,162	-		DZA65_RS20115	0.59	-0.9
4,359,180	+		DZA65_RS20115	0.61	+1.1
4,359,180	+		DZA65_RS20115	0.61	-0.3
4,359,181	-		DZA65_RS20115	0.61	+0.0
4,359,181	-		DZA65_RS20115	0.61	+0.6
4,359,181	-		DZA65_RS20115	0.61	-2.1
4,359,181	-		DZA65_RS20115	0.61	+0.1
4,359,181	-		DZA65_RS20115	0.61	-0.0
4,359,199	+		DZA65_RS20115	0.63	+0.8
4,359,199	+		DZA65_RS20115	0.63	+1.9
4,359,259	+		DZA65_RS20115	0.70	-0.7
4,359,260	-		DZA65_RS20115	0.70	-0.9
4,359,260	-		DZA65_RS20115	0.70	-0.3
4,359,322	+		DZA65_RS20115	0.76	+0.4
4,359,322	+		DZA65_RS20115	0.76	-1.2
4,359,323	-		DZA65_RS20115	0.76	+0.6
4,359,323	-		DZA65_RS20115	0.76	-0.8
4,359,372	+		DZA65_RS20115	0.81	-0.5
4,359,518	+				-0.3
4,359,518	+				+0.1
4,359,518	+				-2.6
4,359,518	+				-0.5
4,359,518	+				+0.3
4,359,518	+				-2.0
4,359,518	+				+0.1
4,359,519	-				+0.1
4,359,519	-				-1.5
4,359,519	-				-2.2
4,359,519	-				+0.3
4,359,519	-				-1.5
4,359,519	-				+0.8
4,359,519	-				-1.5
4,359,519	-				+0.3
4,359,519	-				+0.4
4,359,532	+				+0.7
4,359,533	-				+0.7
4,359,548	+				+0.7
4,359,548	+				+0.1
4,359,549	-				+0.1
4,359,549	-				-0.3
4,359,549	-				+0.5
4,359,549	-				+0.5
4,359,549	-				-0.7
4,359,551	+				+0.1
4,359,551	+				-0.1
4,359,551	+				+0.1
4,359,551	+				-0.3
4,359,552	-				+0.1
4,359,552	-				+1.1
4,359,625	-				-0.7
4,359,632	+				-1.7
4,359,632	+				-0.5
4,359,633	-				-0.2
4,359,633	-				-0.6
4,359,633	-				+0.8
4,359,633	-				+0.2
4,359,633	-				-0.2
4,359,633	-				-0.2
4,359,633	-				-0.1
4,359,633	-				-0.7
4,359,662	+				+0.1
4,359,662	+				-0.5
4,359,663	-				+2.1
4,359,663	-				-0.9
4,359,743	+		DZA65_RS20120	0.13	+3.6
4,359,743	+		DZA65_RS20120	0.13	+2.7
4,359,744	-		DZA65_RS20120	0.13	-1.9
4,359,806	+		DZA65_RS20120	0.17	-0.9
4,359,807	-		DZA65_RS20120	0.17	+0.6
4,359,807	-		DZA65_RS20120	0.17	+0.5
4,359,887	+		DZA65_RS20120	0.22	-0.1
4,359,887	+		DZA65_RS20120	0.22	-0.5
4,359,888	-		DZA65_RS20120	0.22	-0.7
4,359,888	-		DZA65_RS20120	0.22	+0.5
4,359,888	-		DZA65_RS20120	0.22	+0.4
4,359,893	+		DZA65_RS20120	0.22	+0.1
4,359,893	+		DZA65_RS20120	0.22	-1.2
4,359,893	+		DZA65_RS20120	0.22	+0.5
4,359,893	+		DZA65_RS20120	0.22	+0.8
4,359,893	+		DZA65_RS20120	0.22	-1.1
4,359,894	-		DZA65_RS20120	0.22	-0.5
4,359,894	-		DZA65_RS20120	0.22	+0.3
4,359,894	-		DZA65_RS20120	0.22	+2.1
4,359,894	-		DZA65_RS20120	0.22	+1.5
4,359,894	-		DZA65_RS20120	0.22	+0.1
4,359,894	-		DZA65_RS20120	0.22	+1.1
4,359,950	+		DZA65_RS20120	0.26	-1.4
4,359,950	+		DZA65_RS20120	0.26	-0.5
4,359,950	+		DZA65_RS20120	0.26	-1.4
4,359,951	-		DZA65_RS20120	0.26	-0.6
4,359,951	-		DZA65_RS20120	0.26	-0.1
4,360,024	+		DZA65_RS20120	0.31	-1.2
4,360,025	-		DZA65_RS20120	0.31	+0.8
4,360,025	-		DZA65_RS20120	0.31	-0.5
4,360,026	+		DZA65_RS20120	0.31	+0.5
4,360,027	-		DZA65_RS20120	0.31	+0.8
4,360,038	+		DZA65_RS20120	0.32	+0.5
4,360,038	+		DZA65_RS20120	0.32	-0.2
4,360,039	-		DZA65_RS20120	0.32	-0.1
4,360,078	+		DZA65_RS20120	0.34	+0.7
4,360,078	+		DZA65_RS20120	0.34	-0.5
4,360,078	+		DZA65_RS20120	0.34	+1.1
4,360,078	+		DZA65_RS20120	0.34	-0.3
4,360,079	-		DZA65_RS20120	0.34	+0.9
4,360,079	-		DZA65_RS20120	0.34	+2.3
4,360,084	+		DZA65_RS20120	0.35	-0.5
4,360,085	-		DZA65_RS20120	0.35	+2.1
4,360,085	-		DZA65_RS20120	0.35	-0.3
4,360,087	+		DZA65_RS20120	0.35	+0.1
4,360,088	-		DZA65_RS20120	0.35	+0.3
4,360,143	+		DZA65_RS20120	0.38	-0.9
4,360,143	+		DZA65_RS20120	0.38	+0.3
4,360,144	-		DZA65_RS20120	0.39	+1.7
4,360,144	-		DZA65_RS20120	0.39	-1.2
4,360,144	-		DZA65_RS20120	0.39	-0.1
4,360,185	-		DZA65_RS20120	0.41	-0.5
4,360,185	-		DZA65_RS20120	0.41	-1.1
4,360,304	+		DZA65_RS20120	0.49	-0.2
4,360,304	+		DZA65_RS20120	0.49	-0.9
4,360,304	+		DZA65_RS20120	0.49	+2.8
4,360,304	+		DZA65_RS20120	0.49	-1.5
4,360,304	+		DZA65_RS20120	0.49	+0.9
4,360,305	-		DZA65_RS20120	0.49	+1.1
4,360,322	+		DZA65_RS20120	0.50	-0.1
4,360,322	+		DZA65_RS20120	0.50	-1.2
4,360,322	+		DZA65_RS20120	0.50	-0.1
4,360,322	+		DZA65_RS20120	0.50	-2.4
4,360,323	-		DZA65_RS20120	0.50	-1.4
4,360,323	-		DZA65_RS20120	0.50	-0.8
4,360,379	+		DZA65_RS20120	0.54	-0.9
4,360,379	+		DZA65_RS20120	0.54	+0.1
4,360,379	+		DZA65_RS20120	0.54	+0.1
4,360,379	+		DZA65_RS20120	0.54	+0.1
4,360,379	+		DZA65_RS20120	0.54	+0.5
4,360,380	-		DZA65_RS20120	0.54	-1.4
4,360,380	-		DZA65_RS20120	0.54	+1.1
4,360,380	-		DZA65_RS20120	0.54	+1.1
4,360,380	-		DZA65_RS20120	0.54	-0.7
4,360,476	-		DZA65_RS20120	0.60	+0.3
4,360,530	+		DZA65_RS20120	0.64	-1.2
4,360,530	+		DZA65_RS20120	0.64	+1.1
4,360,531	-		DZA65_RS20120	0.64	+1.6
4,360,531	-		DZA65_RS20120	0.64	-0.6
4,360,531	-		DZA65_RS20120	0.64	-1.0
4,360,565	+		DZA65_RS20120	0.66	+0.1
4,360,565	+		DZA65_RS20120	0.66	+0.1
4,360,565	+		DZA65_RS20120	0.66	-0.5
4,360,565	+		DZA65_RS20120	0.66	-0.5
4,360,565	+		DZA65_RS20120	0.66	-0.6
4,360,566	-		DZA65_RS20120	0.66	+0.3
4,360,566	-		DZA65_RS20120	0.66	+0.1
4,360,566	-		DZA65_RS20120	0.66	-1.7
4,360,566	-		DZA65_RS20120	0.66	+1.8
4,360,566	-		DZA65_RS20120	0.66	-2.1
4,360,566	-		DZA65_RS20120	0.66	-2.1
4,360,566	-		DZA65_RS20120	0.66	+0.7
4,360,588	+		DZA65_RS20120	0.67	+0.2
4,360,588	+		DZA65_RS20120	0.67	+0.7
4,360,588	+		DZA65_RS20120	0.67	-0.3
4,360,588	+		DZA65_RS20120	0.67	+1.4
4,360,664	+		DZA65_RS20120	0.72	+1.1
4,360,665	-		DZA65_RS20120	0.72	+0.5
4,360,690	-		DZA65_RS20120	0.74	-0.5
4,360,724	+		DZA65_RS20120	0.76	-0.0
4,360,724	+		DZA65_RS20120	0.76	+0.8
4,360,724	+		DZA65_RS20120	0.76	+2.2
4,360,724	+		DZA65_RS20120	0.76	+1.1
4,360,725	-		DZA65_RS20120	0.76	-0.3
4,360,728	+		DZA65_RS20120	0.76	-0.2
4,360,728	+		DZA65_RS20120	0.76	+1.7
4,360,826	+		DZA65_RS20120	0.83	+1.1
4,360,826	+		DZA65_RS20120	0.83	-0.6
4,360,826	+		DZA65_RS20120	0.83	-0.8
4,360,827	-		DZA65_RS20120	0.83	-1.5
4,360,827	-		DZA65_RS20120	0.83	-0.9
4,360,827	-		DZA65_RS20120	0.83	-0.1
4,360,827	-		DZA65_RS20120	0.83	+0.5
4,360,827	-		DZA65_RS20120	0.83	-0.6
4,360,874	+		DZA65_RS20120	0.86	+0.5
4,360,875	-		DZA65_RS20120	0.86	-1.6
4,360,875	-		DZA65_RS20120	0.86	-0.0
4,360,893	+		DZA65_RS20120	0.87	+1.7
4,360,894	-		DZA65_RS20120	0.87	-0.9
4,360,894	-		DZA65_RS20120	0.87	+0.1
4,360,895	+		DZA65_RS20120	0.87	-0.5
4,360,895	+		DZA65_RS20120	0.87	+0.4
4,360,942	-				-1.1
4,360,963	+				-0.5
4,360,982	-				-0.9
4,361,013	+				-0.5
4,361,013	+				+0.3
4,361,016	+				-0.9
4,361,016	+				+0.8
4,361,016	+				-0.3
4,361,016	+				+0.5
4,361,021	+				-1.0
4,361,022	-				+0.7
4,361,022	-				-0.2
4,361,022	-				-1.2
4,361,079	+				+0.5
4,361,085	+				+0.6
4,361,130	-				-0.5
4,361,147	-				-0.5
4,361,147	-				-1.2
4,361,172	+				+0.1
4,361,183	+				+0.1
4,361,183	+				+1.2
4,361,184	-				+0.7
4,361,185	+				-0.1
4,361,185	+				-0.2
4,361,185	+				-1.4
4,361,186	-				+0.7
4,361,225	+				+0.3
4,361,226	-				-0.4
4,361,240	+				+1.8
4,361,240	+				+0.1
4,361,241	-				-0.9
4,361,346	+		DZA65_RS20125	0.16	+0.3
4,361,347	-		DZA65_RS20125	0.16	+0.9
4,361,347	-		DZA65_RS20125	0.16	-0.3
4,361,347	-		DZA65_RS20125	0.16	+0.2
4,361,411	-		DZA65_RS20125	0.23	+0.2
4,361,417	+		DZA65_RS20125	0.24	+1.1
4,361,417	+		DZA65_RS20125	0.24	+1.5
4,361,418	-		DZA65_RS20125	0.24	+1.7
4,361,418	-		DZA65_RS20125	0.24	+0.3
4,361,418	-		DZA65_RS20125	0.24	+0.6
4,361,436	-		DZA65_RS20125	0.26	+0.2
4,361,441	+		DZA65_RS20125	0.26	-2.1
4,361,441	+		DZA65_RS20125	0.26	+0.5
4,361,442	-		DZA65_RS20125	0.26	+0.8
4,361,442	-		DZA65_RS20125	0.26	+0.7
4,361,442	-		DZA65_RS20125	0.26	+0.1
4,361,442	-		DZA65_RS20125	0.26	+0.3
4,361,442	-		DZA65_RS20125	0.26	-1.3
4,361,442	-		DZA65_RS20125	0.26	+0.2
4,361,480	+		DZA65_RS20125	0.30	-0.3
4,361,480	+		DZA65_RS20125	0.30	+0.6
4,361,480	+		DZA65_RS20125	0.30	+1.7
4,361,480	+		DZA65_RS20125	0.30	+0.5
4,361,480	+		DZA65_RS20125	0.30	+1.5
4,361,480	+		DZA65_RS20125	0.30	+1.1
4,361,480	+		DZA65_RS20125	0.30	-0.5
4,361,480	+		DZA65_RS20125	0.30	-1.8
4,361,480	+		DZA65_RS20125	0.30	-0.8
4,361,480	+		DZA65_RS20125	0.30	+0.8
4,361,481	-		DZA65_RS20125	0.30	+1.5
4,361,481	-		DZA65_RS20125	0.30	-1.9
4,361,481	-		DZA65_RS20125	0.30	+0.1
4,361,481	-		DZA65_RS20125	0.30	+2.4
4,361,481	-		DZA65_RS20125	0.30	-0.2
4,361,481	-		DZA65_RS20125	0.30	+0.3
4,361,481	-		DZA65_RS20125	0.30	-0.5
4,361,481	-		DZA65_RS20125	0.30	-0.9
4,361,481	-		DZA65_RS20125	0.30	-0.6
4,361,481	-		DZA65_RS20125	0.30	+0.3
4,361,483	+		DZA65_RS20125	0.31	+2.1
4,361,483	+		DZA65_RS20125	0.31	+0.8
4,361,483	+		DZA65_RS20125	0.31	+0.9
4,361,484	-		DZA65_RS20125	0.31	-0.9
4,361,484	-		DZA65_RS20125	0.31	-1.0
4,361,484	-		DZA65_RS20125	0.31	-0.2
4,361,484	-		DZA65_RS20125	0.31	+0.1
4,361,486	-		DZA65_RS20125	0.31	-0.0
4,361,516	-		DZA65_RS20125	0.34	+0.5
4,361,516	-		DZA65_RS20125	0.34	-0.2
4,361,577	+		DZA65_RS20125	0.41	+0.1
4,361,578	-		DZA65_RS20125	0.41	-0.1
4,361,578	-		DZA65_RS20125	0.41	-1.8
4,361,596	+		DZA65_RS20125	0.43	+0.7
4,361,597	-		DZA65_RS20125	0.43	+0.7
4,361,598	+		DZA65_RS20125	0.43	+1.7
4,361,598	+		DZA65_RS20125	0.43	-1.1
4,361,599	-		DZA65_RS20125	0.43	+0.4
4,361,599	-		DZA65_RS20125	0.43	+0.7
4,361,599	-		DZA65_RS20125	0.43	-0.0
4,361,624	+		DZA65_RS20125	0.46	+0.7
4,361,624	+		DZA65_RS20125	0.46	+1.1
4,361,624	+		DZA65_RS20125	0.46	-1.5
4,361,624	+		DZA65_RS20125	0.46	-1.1
4,361,624	+		DZA65_RS20125	0.46	+0.1
4,361,624	+		DZA65_RS20125	0.46	+0.7
4,361,624	+		DZA65_RS20125	0.46	-0.6
4,361,625	-		DZA65_RS20125	0.46	-1.9
4,361,628	+		DZA65_RS20125	0.46	+2.2
4,361,628	+		DZA65_RS20125	0.46	-0.5
4,361,629	-		DZA65_RS20125	0.46	-0.8
4,361,629	-		DZA65_RS20125	0.46	-0.3
4,361,629	-		DZA65_RS20125	0.46	+0.2
4,361,629	-		DZA65_RS20125	0.46	+0.8
4,361,629	-		DZA65_RS20125	0.46	-0.4
4,361,632	+		DZA65_RS20125	0.47	+0.8
4,361,632	+		DZA65_RS20125	0.47	-0.9
4,361,632	+		DZA65_RS20125	0.47	+0.6
4,361,632	+		DZA65_RS20125	0.47	+2.6
4,361,632	+		DZA65_RS20125	0.47	+2.4
4,361,632	+		DZA65_RS20125	0.47	+0.1
4,361,632	+		DZA65_RS20125	0.47	-0.7
4,361,633	-		DZA65_RS20125	0.47	-1.3
4,361,633	-		DZA65_RS20125	0.47	+0.4
4,361,633	-		DZA65_RS20125	0.47	-0.6
4,361,633	-		DZA65_RS20125	0.47	-0.1
4,361,633	-		DZA65_RS20125	0.47	-2.2
4,361,633	-		DZA65_RS20125	0.47	+0.5
4,361,757	+		DZA65_RS20125	0.60	-0.5
4,361,757	+		DZA65_RS20125	0.60	+0.4
4,361,758	-		DZA65_RS20125	0.60	-0.7
4,361,758	-		DZA65_RS20125	0.60	-0.2
4,361,758	-		DZA65_RS20125	0.60	-0.1
4,361,771	+		DZA65_RS20125	0.62	+1.8
4,361,772	-		DZA65_RS20125	0.62	-0.1
4,361,772	-		DZA65_RS20125	0.62	-0.1
4,361,878	+		DZA65_RS20125	0.73	+0.2
4,361,879	-		DZA65_RS20125	0.73	-0.3
4,361,879	-		DZA65_RS20125	0.73	-0.5
4,361,961	+		DZA65_RS20125	0.82	-1.9
4,361,962	-		DZA65_RS20125	0.82	-1.2
4,362,007	+		DZA65_RS20125	0.87	+0.2
4,362,008	-		DZA65_RS20125	0.87	-0.8
4,362,010	+		DZA65_RS20125	0.87	+0.1
4,362,010	+		DZA65_RS20125	0.87	+0.9
4,362,010	+		DZA65_RS20125	0.87	-2.0
4,362,010	+		DZA65_RS20125	0.87	+1.1
4,362,011	-		DZA65_RS20125	0.87	+0.3
4,362,011	-		DZA65_RS20125	0.87	+0.0
4,362,011	-		DZA65_RS20125	0.87	-1.7
4,362,011	-		DZA65_RS20125	0.87	+0.5
4,362,011	-		DZA65_RS20125	0.87	-0.3
4,362,016	-		DZA65_RS20125	0.88	-0.3
4,362,071	+				-1.9
4,362,074	+				+1.1