Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19900

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS19895 and DZA65_RS19900 are separated by 161 nucleotidesDZA65_RS19900 and DZA65_RS19905 are separated by 162 nucleotides DZA65_RS19895: DZA65_RS19895 - M20 family metallo-hydrolase, at 4,304,390 to 4,305,718 _RS19895 DZA65_RS19900: DZA65_RS19900 - LysR family transcriptional regulator, at 4,305,880 to 4,306,776 _RS19900 DZA65_RS19905: DZA65_RS19905 - HAMP domain-containing protein, at 4,306,939 to 4,308,609 _RS19905 Position (kb) 4305 4306 4307Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 4304.912 kb on + strand, within DZA65_RS19895at 4304.912 kb on + strand, within DZA65_RS19895at 4304.912 kb on + strand, within DZA65_RS19895at 4304.912 kb on + strand, within DZA65_RS19895at 4304.913 kb on - strand, within DZA65_RS19895at 4304.913 kb on - strand, within DZA65_RS19895at 4304.913 kb on - strand, within DZA65_RS19895at 4304.997 kb on + strand, within DZA65_RS19895at 4304.998 kb on - strand, within DZA65_RS19895at 4304.998 kb on - strand, within DZA65_RS19895at 4305.093 kb on + strand, within DZA65_RS19895at 4305.093 kb on + strand, within DZA65_RS19895at 4305.093 kb on + strand, within DZA65_RS19895at 4305.094 kb on - strand, within DZA65_RS19895at 4305.094 kb on - strand, within DZA65_RS19895at 4305.094 kb on - strand, within DZA65_RS19895at 4305.212 kb on + strand, within DZA65_RS19895at 4305.212 kb on + strand, within DZA65_RS19895at 4305.212 kb on + strand, within DZA65_RS19895at 4305.213 kb on - strand, within DZA65_RS19895at 4305.213 kb on - strand, within DZA65_RS19895at 4305.213 kb on - strand, within DZA65_RS19895at 4305.241 kb on + strand, within DZA65_RS19895at 4305.432 kb on + strand, within DZA65_RS19895at 4305.432 kb on + strand, within DZA65_RS19895at 4305.432 kb on + strand, within DZA65_RS19895at 4305.433 kb on - strand, within DZA65_RS19895at 4305.433 kb on - strand, within DZA65_RS19895at 4305.550 kb on + strand, within DZA65_RS19895at 4305.550 kb on + strand, within DZA65_RS19895at 4305.550 kb on + strand, within DZA65_RS19895at 4305.550 kb on + strand, within DZA65_RS19895at 4305.627 kb on + strandat 4305.627 kb on + strandat 4305.632 kb on - strandat 4305.718 kb on + strandat 4305.718 kb on + strandat 4305.718 kb on + strandat 4305.718 kb on + strandat 4305.718 kb on + strandat 4305.718 kb on + strandat 4305.718 kb on + strandat 4305.719 kb on - strandat 4305.719 kb on - strandat 4305.777 kb on + strandat 4305.778 kb on - strandat 4305.778 kb on - strandat 4305.778 kb on - strandat 4305.793 kb on + strandat 4305.815 kb on + strandat 4305.815 kb on + strandat 4305.815 kb on + strandat 4305.816 kb on - strandat 4305.851 kb on + strandat 4305.852 kb on - strandat 4305.852 kb on - strandat 4305.852 kb on - strandat 4305.852 kb on - strandat 4305.893 kb on + strandat 4305.893 kb on + strandat 4305.894 kb on - strandat 4305.894 kb on - strandat 4305.894 kb on - strandat 4305.894 kb on - strandat 4305.894 kb on - strandat 4305.920 kb on + strandat 4305.920 kb on + strandat 4305.920 kb on + strandat 4305.920 kb on + strandat 4305.920 kb on + strandat 4305.920 kb on + strandat 4306.082 kb on - strand, within DZA65_RS19900at 4306.218 kb on - strand, within DZA65_RS19900at 4306.218 kb on - strand, within DZA65_RS19900at 4306.218 kb on - strand, within DZA65_RS19900at 4306.218 kb on - strand, within DZA65_RS19900at 4306.240 kb on + strand, within DZA65_RS19900at 4306.240 kb on + strand, within DZA65_RS19900at 4306.240 kb on + strand, within DZA65_RS19900at 4306.240 kb on + strand, within DZA65_RS19900at 4306.256 kb on + strand, within DZA65_RS19900at 4306.256 kb on + strand, within DZA65_RS19900at 4306.256 kb on + strand, within DZA65_RS19900at 4306.257 kb on - strand, within DZA65_RS19900at 4306.257 kb on - strand, within DZA65_RS19900at 4306.257 kb on - strand, within DZA65_RS19900at 4306.329 kb on + strand, within DZA65_RS19900at 4306.329 kb on + strand, within DZA65_RS19900at 4306.329 kb on + strand, within DZA65_RS19900at 4306.329 kb on + strand, within DZA65_RS19900at 4306.329 kb on + strand, within DZA65_RS19900at 4306.330 kb on - strand, within DZA65_RS19900at 4306.330 kb on - strand, within DZA65_RS19900at 4306.330 kb on - strand, within DZA65_RS19900at 4306.330 kb on - strand, within DZA65_RS19900at 4306.330 kb on - strand, within DZA65_RS19900at 4306.330 kb on - strand, within DZA65_RS19900at 4306.330 kb on - strand, within DZA65_RS19900at 4306.330 kb on - strand, within DZA65_RS19900at 4306.333 kb on + strand, within DZA65_RS19900at 4306.333 kb on + strand, within DZA65_RS19900at 4306.333 kb on + strand, within DZA65_RS19900at 4306.334 kb on - strand, within DZA65_RS19900at 4306.334 kb on - strand, within DZA65_RS19900at 4306.334 kb on - strandat 4306.334 kb on - strand, within DZA65_RS19900at 4306.334 kb on - strand, within DZA65_RS19900at 4306.348 kb on + strand, within DZA65_RS19900at 4306.348 kb on + strand, within DZA65_RS19900at 4306.348 kb on + strand, within DZA65_RS19900at 4306.348 kb on + strand, within DZA65_RS19900at 4306.348 kb on + strand, within DZA65_RS19900at 4306.349 kb on - strand, within DZA65_RS19900at 4306.349 kb on - strand, within DZA65_RS19900at 4306.349 kb on - strand, within DZA65_RS19900at 4306.364 kb on + strand, within DZA65_RS19900at 4306.366 kb on + strand, within DZA65_RS19900at 4306.366 kb on + strand, within DZA65_RS19900at 4306.390 kb on + strand, within DZA65_RS19900at 4306.390 kb on + strand, within DZA65_RS19900at 4306.391 kb on - strand, within DZA65_RS19900at 4306.391 kb on - strand, within DZA65_RS19900at 4306.456 kb on + strand, within DZA65_RS19900at 4306.456 kb on + strand, within DZA65_RS19900at 4306.489 kb on + strand, within DZA65_RS19900at 4306.489 kb on + strand, within DZA65_RS19900at 4306.489 kb on + strand, within DZA65_RS19900at 4306.489 kb on + strand, within DZA65_RS19900at 4306.490 kb on - strand, within DZA65_RS19900at 4306.490 kb on - strand, within DZA65_RS19900at 4306.492 kb on + strand, within DZA65_RS19900at 4306.492 kb on + strand, within DZA65_RS19900at 4306.492 kb on + strand, within DZA65_RS19900at 4306.492 kb on + strand, within DZA65_RS19900at 4306.493 kb on - strand, within DZA65_RS19900at 4306.493 kb on - strand, within DZA65_RS19900at 4306.493 kb on - strand, within DZA65_RS19900at 4306.493 kb on - strand, within DZA65_RS19900at 4306.493 kb on - strand, within DZA65_RS19900at 4306.493 kb on - strand, within DZA65_RS19900at 4306.493 kb on - strand, within DZA65_RS19900at 4306.493 kb on - strand, within DZA65_RS19900at 4306.605 kb on + strand, within DZA65_RS19900at 4306.605 kb on + strand, within DZA65_RS19900at 4306.605 kb on + strand, within DZA65_RS19900at 4306.606 kb on - strand, within DZA65_RS19900at 4306.696 kb on + strandat 4306.696 kb on + strandat 4306.697 kb on - strandat 4306.697 kb on - strandat 4306.745 kb on + strandat 4306.745 kb on + strandat 4306.745 kb on + strandat 4306.746 kb on - strandat 4306.785 kb on - strandat 4306.786 kb on + strandat 4306.787 kb on - strandat 4306.787 kb on - strandat 4306.787 kb on - strandat 4306.787 kb on - strandat 4306.787 kb on - strandat 4306.838 kb on + strandat 4306.838 kb on + strandat 4306.839 kb on - strandat 4306.839 kb on - strandat 4306.839 kb on - strandat 4306.839 kb on - strandat 4306.839 kb on - strandat 4306.905 kb on + strandat 4307.025 kb on + strandat 4307.026 kb on - strandat 4307.026 kb on - strandat 4307.026 kb on - strandat 4307.092 kb on + strandat 4307.093 kb on - strandat 4307.208 kb on + strand, within DZA65_RS19905at 4307.208 kb on + strand, within DZA65_RS19905at 4307.208 kb on + strand, within DZA65_RS19905at 4307.208 kb on + strand, within DZA65_RS19905at 4307.208 kb on + strand, within DZA65_RS19905at 4307.209 kb on - strand, within DZA65_RS19905at 4307.209 kb on - strand, within DZA65_RS19905at 4307.253 kb on + strand, within DZA65_RS19905at 4307.254 kb on - strand, within DZA65_RS19905at 4307.283 kb on + strand, within DZA65_RS19905at 4307.298 kb on + strand, within DZA65_RS19905at 4307.298 kb on + strand, within DZA65_RS19905at 4307.299 kb on - strand, within DZA65_RS19905at 4307.487 kb on + strand, within DZA65_RS19905at 4307.488 kb on - strand, within DZA65_RS19905at 4307.505 kb on + strand, within DZA65_RS19905at 4307.505 kb on + strand, within DZA65_RS19905at 4307.506 kb on - strand, within DZA65_RS19905at 4307.506 kb on - strand, within DZA65_RS19905at 4307.515 kb on - strand, within DZA65_RS19905at 4307.668 kb on + strand, within DZA65_RS19905

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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4,304,912 + DZA65_RS19895 0.39 -0.5
4,304,912 + DZA65_RS19895 0.39 -1.7
4,304,912 + DZA65_RS19895 0.39 -1.2
4,304,912 + DZA65_RS19895 0.39 +1.5
4,304,913 - DZA65_RS19895 0.39 -0.1
4,304,913 - DZA65_RS19895 0.39 -0.1
4,304,913 - DZA65_RS19895 0.39 -0.3
4,304,997 + DZA65_RS19895 0.46 +0.1
4,304,998 - DZA65_RS19895 0.46 -1.6
4,304,998 - DZA65_RS19895 0.46 +0.8
4,305,093 + DZA65_RS19895 0.53 -0.0
4,305,093 + DZA65_RS19895 0.53 +1.3
4,305,093 + DZA65_RS19895 0.53 +0.2
4,305,094 - DZA65_RS19895 0.53 +1.7
4,305,094 - DZA65_RS19895 0.53 -0.9
4,305,094 - DZA65_RS19895 0.53 -0.0
4,305,212 + DZA65_RS19895 0.62 -0.9
4,305,212 + DZA65_RS19895 0.62 -0.9
4,305,212 + DZA65_RS19895 0.62 -0.7
4,305,213 - DZA65_RS19895 0.62 -0.7
4,305,213 - DZA65_RS19895 0.62 -0.1
4,305,213 - DZA65_RS19895 0.62 -1.1
4,305,241 + DZA65_RS19895 0.64 -0.9
4,305,432 + DZA65_RS19895 0.78 +0.3
4,305,432 + DZA65_RS19895 0.78 -0.3
4,305,432 + DZA65_RS19895 0.78 +0.3
4,305,433 - DZA65_RS19895 0.78 -0.5
4,305,433 - DZA65_RS19895 0.78 +0.7
4,305,550 + DZA65_RS19895 0.87 -2.4
4,305,550 + DZA65_RS19895 0.87 -0.6
4,305,550 + DZA65_RS19895 0.87 -1.0
4,305,550 + DZA65_RS19895 0.87 +0.2
4,305,627 + +0.9
4,305,627 + +2.2
4,305,632 - -0.9
4,305,718 + -0.7
4,305,718 + +0.6
4,305,718 + -0.1
4,305,718 + -0.1
4,305,718 + -0.8
4,305,718 + -0.2
4,305,718 + -1.1
4,305,719 - -0.8
4,305,719 - -1.7
4,305,777 + +1.0
4,305,778 - -0.5
4,305,778 - -1.5
4,305,778 - +0.7
4,305,793 + +0.1
4,305,815 + -1.4
4,305,815 + +0.9
4,305,815 + -1.4
4,305,816 - +0.9
4,305,851 + +0.1
4,305,852 - +0.3
4,305,852 - -0.2
4,305,852 - -0.4
4,305,852 - -1.2
4,305,893 + +1.1
4,305,893 + -1.0
4,305,894 - +3.0
4,305,894 - +2.3
4,305,894 - -0.5
4,305,894 - +1.1
4,305,894 - +1.1
4,305,920 + +0.8
4,305,920 + +2.1
4,305,920 + +1.5
4,305,920 + +0.8
4,305,920 + -1.7
4,305,920 + -1.9
4,306,082 - DZA65_RS19900 0.23 +0.2
4,306,218 - DZA65_RS19900 0.38 -1.0
4,306,218 - DZA65_RS19900 0.38 -0.0
4,306,218 - DZA65_RS19900 0.38 +1.1
4,306,218 - DZA65_RS19900 0.38 +0.9
4,306,240 + DZA65_RS19900 0.40 +0.0
4,306,240 + DZA65_RS19900 0.40 -0.2
4,306,240 + DZA65_RS19900 0.40 -1.7
4,306,240 + DZA65_RS19900 0.40 +0.3
4,306,256 + DZA65_RS19900 0.42 -1.5
4,306,256 + DZA65_RS19900 0.42 -0.7
4,306,256 + DZA65_RS19900 0.42 -2.4
4,306,257 - DZA65_RS19900 0.42 +0.3
4,306,257 - DZA65_RS19900 0.42 +1.2
4,306,257 - DZA65_RS19900 0.42 +1.1
4,306,329 + DZA65_RS19900 0.50 -1.9
4,306,329 + DZA65_RS19900 0.50 +0.4
4,306,329 + DZA65_RS19900 0.50 +0.2
4,306,329 + DZA65_RS19900 0.50 +0.7
4,306,329 + DZA65_RS19900 0.50 -1.4
4,306,330 - DZA65_RS19900 0.50 -1.5
4,306,330 - DZA65_RS19900 0.50 +1.1
4,306,330 - DZA65_RS19900 0.50 -0.5
4,306,330 - DZA65_RS19900 0.50 +0.0
4,306,330 - DZA65_RS19900 0.50 +0.3
4,306,330 - DZA65_RS19900 0.50 -0.1
4,306,330 - DZA65_RS19900 0.50 -0.2
4,306,330 - DZA65_RS19900 0.50 +0.0
4,306,333 + DZA65_RS19900 0.51 +1.3
4,306,333 + DZA65_RS19900 0.51 +0.1
4,306,333 + DZA65_RS19900 0.51 +1.0
4,306,334 - DZA65_RS19900 0.51 +0.1
4,306,334 - DZA65_RS19900 0.51 +6.5
4,306,334 - -0.9
4,306,334 - DZA65_RS19900 0.51 -0.1
4,306,334 - DZA65_RS19900 0.51 +0.9
4,306,348 + DZA65_RS19900 0.52 +1.1
4,306,348 + DZA65_RS19900 0.52 +2.8
4,306,348 + DZA65_RS19900 0.52 -0.6
4,306,348 + DZA65_RS19900 0.52 -0.0
4,306,348 + DZA65_RS19900 0.52 -0.5
4,306,349 - DZA65_RS19900 0.52 -0.5
4,306,349 - DZA65_RS19900 0.52 -0.9
4,306,349 - DZA65_RS19900 0.52 +3.9
4,306,364 + DZA65_RS19900 0.54 -0.0
4,306,366 + DZA65_RS19900 0.54 -1.0
4,306,366 + DZA65_RS19900 0.54 -0.3
4,306,390 + DZA65_RS19900 0.57 -0.7
4,306,390 + DZA65_RS19900 0.57 -2.1
4,306,391 - DZA65_RS19900 0.57 -0.8
4,306,391 - DZA65_RS19900 0.57 -0.1
4,306,456 + DZA65_RS19900 0.64 -0.1
4,306,456 + DZA65_RS19900 0.64 +1.1
4,306,489 + DZA65_RS19900 0.68 +1.4
4,306,489 + DZA65_RS19900 0.68 -1.8
4,306,489 + DZA65_RS19900 0.68 -0.1
4,306,489 + DZA65_RS19900 0.68 -0.9
4,306,490 - DZA65_RS19900 0.68 -0.2
4,306,490 - DZA65_RS19900 0.68 +0.6
4,306,492 + DZA65_RS19900 0.68 +2.8
4,306,492 + DZA65_RS19900 0.68 +0.4
4,306,492 + DZA65_RS19900 0.68 +0.3
4,306,492 + DZA65_RS19900 0.68 +1.1
4,306,493 - DZA65_RS19900 0.68 +2.0
4,306,493 - DZA65_RS19900 0.68 +1.7
4,306,493 - DZA65_RS19900 0.68 +0.1
4,306,493 - DZA65_RS19900 0.68 -0.3
4,306,493 - DZA65_RS19900 0.68 -0.9
4,306,493 - DZA65_RS19900 0.68 +1.7
4,306,493 - DZA65_RS19900 0.68 -0.4
4,306,493 - DZA65_RS19900 0.68 +0.9
4,306,605 + DZA65_RS19900 0.81 -0.7
4,306,605 + DZA65_RS19900 0.81 +1.6
4,306,605 + DZA65_RS19900 0.81 +0.5
4,306,606 - DZA65_RS19900 0.81 +0.2
4,306,696 + -1.5
4,306,696 + -1.0
4,306,697 - +0.5
4,306,697 - +0.5
4,306,745 + +1.1
4,306,745 + +0.8
4,306,745 + -0.4
4,306,746 - -1.2
4,306,785 - +1.5
4,306,786 + +0.1
4,306,787 - +0.9
4,306,787 - -1.4
4,306,787 - +0.3
4,306,787 - -0.1
4,306,787 - -0.4
4,306,838 + +1.8
4,306,838 + +0.7
4,306,839 - -1.5
4,306,839 - -0.1
4,306,839 - +2.1
4,306,839 - -1.7
4,306,839 - +1.4
4,306,905 + +0.9
4,307,025 + +0.4
4,307,026 - +0.5
4,307,026 - -0.1
4,307,026 - +0.1
4,307,092 + -0.5
4,307,093 - -0.9
4,307,208 + DZA65_RS19905 0.16 -1.5
4,307,208 + DZA65_RS19905 0.16 -0.4
4,307,208 + DZA65_RS19905 0.16 +0.1
4,307,208 + DZA65_RS19905 0.16 +0.3
4,307,208 + DZA65_RS19905 0.16 -0.4
4,307,209 - DZA65_RS19905 0.16 -0.1
4,307,209 - DZA65_RS19905 0.16 +1.2
4,307,253 + DZA65_RS19905 0.19 -1.7
4,307,254 - DZA65_RS19905 0.19 +1.1
4,307,283 + DZA65_RS19905 0.21 -0.2
4,307,298 + DZA65_RS19905 0.21 -0.3
4,307,298 + DZA65_RS19905 0.21 -0.2
4,307,299 - DZA65_RS19905 0.22 +0.2
4,307,487 + DZA65_RS19905 0.33 -1.5
4,307,488 - DZA65_RS19905 0.33 -1.5
4,307,505 + DZA65_RS19905 0.34 +0.2
4,307,505 + DZA65_RS19905 0.34 -0.9
4,307,506 - DZA65_RS19905 0.34 +1.4
4,307,506 - DZA65_RS19905 0.34 -0.7
4,307,515 - DZA65_RS19905 0.34 -1.1
4,307,668 + DZA65_RS19905 0.44 -0.0

Or see this region's nucleotide sequence