Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19500

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,220,172	+				-0.3
4,220,212	+				+0.9
4,220,212	+				-1.0
4,220,212	+				+0.0
4,220,216	+				+1.5
4,220,216	+				+0.5
4,220,220	+				-0.3
4,220,220	+				-0.1
4,220,290	+				-1.4
4,220,304	+				+0.7
4,220,304	+				+0.4
4,220,306	+				-1.4
4,220,310	+				-0.2
4,220,310	+				+0.0
4,220,310	+				+0.2
4,220,311	-				+1.4
4,220,632	+		DZA65_RS19495	0.41	-0.5
4,220,633	-		DZA65_RS19495	0.42	-1.5
4,220,634	+		DZA65_RS19495	0.42	-1.3
4,220,635	-		DZA65_RS19495	0.42	-0.8
4,220,635	-		DZA65_RS19495	0.42	+1.0
4,220,985	+				-2.4
4,221,078	+				+1.8
4,221,078	+				+0.6
4,221,078	+				+0.4
4,221,078	+				+0.3
4,221,078	+				+0.7
4,221,078	+				+0.0
4,221,078	+				+0.0
4,221,078	+				-1.3
4,221,078	+				-1.0
4,221,079	-				-1.3
4,221,079	-				+0.3
4,221,079	-				-0.3
4,221,079	-				+0.0
4,221,082	+				-1.0
4,221,083	-				-0.1
4,221,083	-				+1.0
4,221,083	-				+0.6
4,221,083	-				-0.4
4,221,083	-				+1.5
4,221,083	-				-0.5
4,221,131	+				-0.7
4,221,132	-				+0.2
4,221,132	-				-0.9
4,221,132	-				-0.3
4,221,138	+				-0.3
4,221,138	+				+1.0
4,221,138	+				-1.1
4,221,138	+				-0.2
4,221,138	+				+1.0
4,221,138	+				-2.3
4,221,139	-				-0.5
4,221,139	-				-0.7
4,221,139	-				-2.4
4,221,139	-				-1.0
4,221,139	-				-0.2
4,221,142	+				-0.1
4,221,142	+				-0.5
4,221,142	+				+0.2
4,221,142	+				-1.0
4,221,142	+				-0.2
4,221,142	+				-0.4
4,221,150	-				+0.8
4,221,150	-				-1.4
4,221,150	-				-2.1
4,221,221	+		DZA65_RS19500	0.15	+1.0
4,221,222	-		DZA65_RS19500	0.16	-0.7
4,221,222	-		DZA65_RS19500	0.16	-1.5
4,221,231	-		DZA65_RS19500	0.18	-0.4
4,221,231	-		DZA65_RS19500	0.18	-1.8
4,221,385	-		DZA65_RS19500	0.50	-1.5
4,221,385	-		DZA65_RS19500	0.50	-1.3
4,221,399	+		DZA65_RS19500	0.53	-1.0
4,221,400	-		DZA65_RS19500	0.53	-0.3
4,221,400	-		DZA65_RS19500	0.53	+0.6
4,221,451	+		DZA65_RS19500	0.64	+1.3
4,221,451	+		DZA65_RS19500	0.64	+0.5
4,221,451	+		DZA65_RS19500	0.64	+0.7
4,221,451	+		DZA65_RS19500	0.64	+1.5
4,221,451	+		DZA65_RS19500	0.64	+0.7
4,221,451	+		DZA65_RS19500	0.64	+0.2
4,221,451	+		DZA65_RS19500	0.64	-0.9
4,221,451	+		DZA65_RS19500	0.64	-1.1
4,221,451	+		DZA65_RS19500	0.64	-0.5
4,221,451	+		DZA65_RS19500	0.64	-0.0
4,221,452	-		DZA65_RS19500	0.64	-0.3
4,221,452	-		DZA65_RS19500	0.64	+0.5
4,221,452	-		DZA65_RS19500	0.64	+0.4
4,221,452	-		DZA65_RS19500	0.64	-0.8
4,221,452	-		DZA65_RS19500	0.64	+0.3
4,221,452	-		DZA65_RS19500	0.64	-2.0
4,221,452	-		DZA65_RS19500	0.64	+0.3
4,221,452	-		DZA65_RS19500	0.64	-0.9
4,221,455	+		DZA65_RS19500	0.65	+0.8
4,221,455	+		DZA65_RS19500	0.65	+1.6
4,221,455	+		DZA65_RS19500	0.65	-1.0
4,221,455	+		DZA65_RS19500	0.65	-0.7
4,221,455	+		DZA65_RS19500	0.65	-0.1
4,221,455	+		DZA65_RS19500	0.65	-1.8
4,221,456	-		DZA65_RS19500	0.65	-2.3
4,221,456	-		DZA65_RS19500	0.65	-1.0
4,221,468	+		DZA65_RS19500	0.68	-1.0
4,221,528	+		DZA65_RS19500	0.80	-1.5
4,221,529	-				-1.0
4,221,538	-		DZA65_RS19500	0.82	-0.3
4,221,574	+				-0.5
4,221,575	-				-1.0
4,221,689	+				+0.2
4,221,707	+				+0.7
4,221,707	+				+0.0
4,221,707	+				+0.0
4,221,707	+				-0.2
4,221,708	-				-0.3
4,221,708	-				+0.6
4,221,708	-				+0.2
4,221,708	-				+0.8
4,221,708	-				-1.0
4,221,708	-				-0.5
4,221,708	-				+0.5
4,221,708	-				+1.6
4,221,708	-				-1.0
4,221,712	+				+0.6
4,221,726	-				+0.3
4,221,750	+				+0.2
4,221,750	+				+0.5
4,221,751	-				-0.3
4,221,751	-				+0.3
4,221,751	-				-0.4
4,221,751	-				+0.7
4,221,751	-				-0.2
4,221,774	+				-0.3
4,221,774	+				-0.5
4,221,774	+				+0.6
4,221,774	+				+0.8
4,221,775	-				+1.3
4,221,775	-				-0.2
4,221,775	-				+1.2
4,221,777	+				-0.2
4,221,778	-				+0.4
4,221,778	-				-1.3
4,221,789	-				+2.6
4,221,789	-				-0.2
4,221,789	-				-0.7
4,221,790	+				+1.8
4,221,790	+				+0.0
4,221,790	+				+2.2
4,221,790	+				-0.4
4,221,790	+				-0.4
4,221,790	+				-0.5
4,221,790	+				-0.4
4,221,790	+				-1.5
4,221,791	-				-1.3
4,221,791	-				+0.6
4,221,791	-				+1.0
4,221,791	-				+0.0
4,221,791	-				+3.3
4,221,791	-				+0.8
4,221,791	-				-2.3
4,221,791	-				+0.5
4,221,791	-				-1.8
4,221,791	-				-0.0
4,221,791	-				-0.8
4,221,796	+				-0.5
4,221,796	+				+1.6
4,221,796	+				+0.5
4,221,796	+				-0.3
4,221,796	+				-0.3
4,221,797	-				-0.2
4,221,797	-				+0.1
4,221,813	+				+0.7
4,221,813	+				-0.8
4,221,814	-				+1.3
4,221,814	-				+0.5
4,221,826	+				-0.3
4,221,826	+				+0.0
4,221,827	-				+1.4
4,221,827	-				-0.2
4,221,841	+				+0.0
4,221,841	+				-1.0
4,221,841	+				+0.3
4,221,841	+				-1.0
4,221,842	-				+0.5
4,221,846	+				+0.0
4,221,846	+				+0.6
4,221,846	+				+0.0
4,221,846	+				-0.9
4,221,846	+				-1.3
4,221,846	+				+1.0
4,221,846	+				-0.0
4,221,846	+				-1.5
4,221,846	+				-1.8
4,221,846	+				-0.3
4,221,846	+				+0.3
4,221,846	+				-0.8
4,221,846	+				-0.9
4,221,846	+				-0.5
4,221,846	+				+0.8
4,221,846	+				+0.2
4,221,846	+				+0.0
4,221,846	+				-0.4
4,221,846	+				+0.4
4,221,846	+				-0.6
4,221,846	+				-0.5
4,221,846	+				+0.0
4,221,846	+				+1.0
4,221,846	+				+1.0
4,221,846	+				-0.3
4,221,847	-				-0.2
4,221,847	-				-0.9
4,221,847	-				+0.6
4,221,847	-				-1.1
4,221,847	-				+1.0
4,221,847	-				+1.0
4,221,847	-				+1.3
4,221,847	-				+1.0
4,221,847	-				-0.2
4,221,847	-				-1.3
4,221,847	-				+0.8
4,221,847	-				+1.3
4,221,847	-				+0.6
4,221,847	-				+0.7
4,221,847	-				-0.8
4,221,847	-				+0.6
4,221,847	-				-1.1
4,221,847	-				-0.1
4,221,847	-				+2.0
4,221,847	-				+1.0
4,221,847	-				+1.0
4,221,847	-				+0.7
4,221,847	-				+1.5
4,221,847	-				+0.4
4,221,847	-				-1.2
4,221,891	+				+1.5
4,221,901	+				+2.4
4,221,901	+				-0.5
4,221,960	+		DZA65_RS19505	0.16	-1.0
4,221,961	-		DZA65_RS19505	0.16	-2.3
4,221,983	+		DZA65_RS19505	0.18	+0.7
4,221,983	+		DZA65_RS19505	0.18	-1.8
4,221,983	+		DZA65_RS19505	0.18	-1.3
4,221,983	+		DZA65_RS19505	0.18	-1.0
4,221,983	+		DZA65_RS19505	0.18	+1.9
4,221,984	-		DZA65_RS19505	0.18	+0.5
4,221,984	-		DZA65_RS19505	0.18	+1.4
4,221,984	-		DZA65_RS19505	0.18	+0.5
4,222,064	+		DZA65_RS19505	0.28	-1.3
4,222,133	+		DZA65_RS19505	0.36	-0.7
4,222,134	-		DZA65_RS19505	0.36	-0.2
4,222,156	+		DZA65_RS19505	0.38	+1.2
4,222,156	+		DZA65_RS19505	0.38	+0.8
4,222,156	+		DZA65_RS19505	0.38	-0.5
4,222,156	+		DZA65_RS19505	0.38	+0.7
4,222,156	+		DZA65_RS19505	0.38	+0.6
4,222,157	-		DZA65_RS19505	0.38	-1.5
4,222,195	+		DZA65_RS19505	0.43	+0.3
4,222,195	+		DZA65_RS19505	0.43	+1.3
4,222,195	+		DZA65_RS19505	0.43	-1.8
4,222,195	+		DZA65_RS19505	0.43	-0.3
4,222,195	+		DZA65_RS19505	0.43	+0.6
4,222,195	+		DZA65_RS19505	0.43	-0.5
4,222,195	+		DZA65_RS19505	0.43	-0.5
4,222,195	+		DZA65_RS19505	0.43	+0.3
4,222,196	-		DZA65_RS19505	0.43	+0.2
4,222,196	-		DZA65_RS19505	0.43	-1.5
4,222,196	-		DZA65_RS19505	0.43	+1.0
4,222,196	-		DZA65_RS19505	0.43	+1.0
4,222,196	-		DZA65_RS19505	0.43	+1.2
4,222,196	-		DZA65_RS19505	0.43	+0.9
4,222,196	-		DZA65_RS19505	0.43	+0.2
4,222,198	+		DZA65_RS19505	0.43	+1.0
4,222,199	-		DZA65_RS19505	0.43	-0.7
4,222,199	-		DZA65_RS19505	0.43	-0.5
4,222,199	-		DZA65_RS19505	0.43	+2.5
4,222,259	+		DZA65_RS19505	0.50	-0.3
4,222,259	+		DZA65_RS19505	0.50	+0.6
4,222,259	+		DZA65_RS19505	0.50	+1.0
4,222,259	+		DZA65_RS19505	0.50	+0.5
4,222,259	+		DZA65_RS19505	0.50	+1.0
4,222,259	+		DZA65_RS19505	0.50	+1.0
4,222,259	+		DZA65_RS19505	0.50	+0.5
4,222,259	+		DZA65_RS19505	0.50	+1.0
4,222,259	+		DZA65_RS19505	0.50	+1.0
4,222,259	+		DZA65_RS19505	0.50	-1.5
4,222,259	+		DZA65_RS19505	0.50	+0.4
4,222,259	+		DZA65_RS19505	0.50	+0.9
4,222,259	+		DZA65_RS19505	0.50	-0.1
4,222,259	+		DZA65_RS19505	0.50	-1.4
4,222,259	+		DZA65_RS19505	0.50	+1.4
4,222,259	+		DZA65_RS19505	0.50	+2.6
4,222,259	+		DZA65_RS19505	0.50	-0.3
4,222,259	+		DZA65_RS19505	0.50	-0.4
4,222,259	+		DZA65_RS19505	0.50	+1.8
4,222,259	+		DZA65_RS19505	0.50	-0.4
4,222,259	+		DZA65_RS19505	0.50	-0.2
4,222,259	+		DZA65_RS19505	0.50	+1.1
4,222,260	-		DZA65_RS19505	0.50	-0.4
4,222,260	-		DZA65_RS19505	0.50	-1.7
4,222,260	-		DZA65_RS19505	0.50	+0.7
4,222,260	-		DZA65_RS19505	0.50	-0.4
4,222,260	-		DZA65_RS19505	0.50	+1.2
4,222,260	-		DZA65_RS19505	0.50	+1.8
4,222,260	-		DZA65_RS19505	0.50	-0.3
4,222,260	-		DZA65_RS19505	0.50	+0.5
4,222,260	-		DZA65_RS19505	0.50	+1.8
4,222,260	-		DZA65_RS19505	0.50	-0.8
4,222,260	-		DZA65_RS19505	0.50	+0.2
4,222,260	-		DZA65_RS19505	0.50	-0.6
4,222,260	-		DZA65_RS19505	0.50	+0.8
4,222,260	-		DZA65_RS19505	0.50	+0.9
4,222,260	-		DZA65_RS19505	0.50	-1.8
4,222,260	-		DZA65_RS19505	0.50	-1.0
4,222,260	-		DZA65_RS19505	0.50	+1.4
4,222,260	-		DZA65_RS19505	0.50	+1.7
4,222,260	-		DZA65_RS19505	0.50	-0.7
4,222,261	+		DZA65_RS19505	0.51	-2.0
4,222,261	+		DZA65_RS19505	0.51	+1.0
4,222,261	+		DZA65_RS19505	0.51	-0.7
4,222,261	+		DZA65_RS19505	0.51	+0.4
4,222,262	-		DZA65_RS19505	0.51	-0.3
4,222,262	-		DZA65_RS19505	0.51	+1.0
4,222,262	-		DZA65_RS19505	0.51	-0.6
4,222,262	-		DZA65_RS19505	0.51	+0.7
4,222,282	+		DZA65_RS19505	0.53	-1.0
4,222,302	+		DZA65_RS19505	0.55	-0.4
4,222,302	+		DZA65_RS19505	0.55	+0.2
4,222,302	+		DZA65_RS19505	0.55	+0.9
4,222,302	+		DZA65_RS19505	0.55	+0.0
4,222,303	-		DZA65_RS19505	0.55	+1.3
4,222,303	-		DZA65_RS19505	0.55	-0.8
4,222,303	-		DZA65_RS19505	0.55	+0.5
4,222,303	-		DZA65_RS19505	0.55	-1.5
4,222,325	+		DZA65_RS19505	0.58	+0.5
4,222,326	-		DZA65_RS19505	0.58	-2.5
4,222,326	-		DZA65_RS19505	0.58	-0.6
4,222,339	+		DZA65_RS19505	0.60	-0.0
4,222,340	-		DZA65_RS19505	0.60	+0.6
4,222,361	+		DZA65_RS19505	0.62	+2.5
4,222,361	+		DZA65_RS19505	0.62	+1.0
4,222,361	+		DZA65_RS19505	0.62	-0.5
4,222,361	+		DZA65_RS19505	0.62	+1.0
4,222,361	+		DZA65_RS19505	0.62	-0.5
4,222,361	+		DZA65_RS19505	0.62	+0.1
4,222,361	+		DZA65_RS19505	0.62	-0.2
4,222,361	+		DZA65_RS19505	0.62	-1.0
4,222,361	+		DZA65_RS19505	0.62	-0.8
4,222,361	+		DZA65_RS19505	0.62	+1.5
4,222,361	+		DZA65_RS19505	0.62	+0.3
4,222,361	+		DZA65_RS19505	0.62	-0.5
4,222,362	-		DZA65_RS19505	0.62	-1.1
4,222,362	-		DZA65_RS19505	0.62	+0.4
4,222,362	-		DZA65_RS19505	0.62	-1.5
4,222,362	-		DZA65_RS19505	0.62	-0.4
4,222,362	-		DZA65_RS19505	0.62	+0.0
4,222,362	-		DZA65_RS19505	0.62	-0.5
4,222,362	-		DZA65_RS19505	0.62	-0.2
4,222,362	-		DZA65_RS19505	0.62	+0.0
4,222,362	-		DZA65_RS19505	0.62	+0.5
4,222,362	-		DZA65_RS19505	0.62	-0.4
4,222,362	-		DZA65_RS19505	0.62	+1.0
4,222,387	+		DZA65_RS19505	0.65	-0.1
4,222,387	+		DZA65_RS19505	0.65	+1.0
4,222,387	+		DZA65_RS19505	0.65	-0.5
4,222,388	-		DZA65_RS19505	0.65	-1.4
4,222,388	-		DZA65_RS19505	0.65	-0.3
4,222,418	+		DZA65_RS19505	0.69	-1.5
4,222,418	+		DZA65_RS19505	0.69	-0.6
4,222,418	+		DZA65_RS19505	0.69	-0.3
4,222,419	-		DZA65_RS19505	0.69	+1.2
4,222,419	-		DZA65_RS19505	0.69	-1.4
4,222,419	-		DZA65_RS19505	0.69	-0.2
4,222,419	-		DZA65_RS19505	0.69	+0.3
4,222,419	-		DZA65_RS19505	0.69	-0.2
4,222,420	+		DZA65_RS19505	0.69	+0.7
4,222,420	+		DZA65_RS19505	0.69	+0.7
4,222,420	+		DZA65_RS19505	0.69	+0.0
4,222,421	-		DZA65_RS19505	0.69	-0.7
4,222,421	-		DZA65_RS19505	0.69	-1.8
4,222,421	-		DZA65_RS19505	0.69	+0.9
4,222,421	-		DZA65_RS19505	0.69	+1.4
4,222,458	+		DZA65_RS19505	0.74	+0.0
4,222,458	+		DZA65_RS19505	0.74	-0.2
4,222,458	+		DZA65_RS19505	0.74	+0.0
4,222,458	+		DZA65_RS19505	0.74	+0.7
4,222,459	-		DZA65_RS19505	0.74	+0.2
4,222,459	-		DZA65_RS19505	0.74	-0.3
4,222,459	-		DZA65_RS19505	0.74	-0.1
4,222,459	-		DZA65_RS19505	0.74	+0.0
4,222,459	-		DZA65_RS19505	0.74	+0.5
4,222,496	+		DZA65_RS19505	0.78	-1.6
4,222,496	+		DZA65_RS19505	0.78	-0.4
4,222,496	+		DZA65_RS19505	0.78	+0.5
4,222,496	+		DZA65_RS19505	0.78	-1.3
4,222,497	-		DZA65_RS19505	0.78	-1.2
4,222,507	+		DZA65_RS19505	0.79	+2.2
4,222,511	+		DZA65_RS19505	0.80	-0.1
4,222,511	+		DZA65_RS19505	0.80	-1.3
4,222,511	+		DZA65_RS19505	0.80	+1.2
4,222,511	+				-1.3
4,222,512	-		DZA65_RS19505	0.80	+0.3
4,222,512	-		DZA65_RS19505	0.80	-0.5
4,222,512	-		DZA65_RS19505	0.80	-2.6
4,222,512	-		DZA65_RS19505	0.80	+0.0
4,222,512	-		DZA65_RS19505	0.80	+0.6
4,222,512	-		DZA65_RS19505	0.80	-0.3
4,222,512	-		DZA65_RS19505	0.80	-2.3
4,222,512	-		DZA65_RS19505	0.80	-0.8
4,222,556	+		DZA65_RS19505	0.85	+1.0
4,222,556	+		DZA65_RS19505	0.85	-1.0
4,222,557	-		DZA65_RS19505	0.85	-0.8
4,222,557	-				+0.5
4,222,557	-		DZA65_RS19505	0.85	+0.2
4,222,557	-		DZA65_RS19505	0.85	-1.5
4,222,561	+		DZA65_RS19505	0.86	-0.3
4,222,577	+		DZA65_RS19505	0.87	+1.6
4,222,577	+		DZA65_RS19505	0.87	-1.3
4,222,577	+		DZA65_RS19505	0.87	-2.6
4,222,577	+		DZA65_RS19505	0.87	+0.2
4,222,578	-		DZA65_RS19505	0.88	-0.4
4,222,578	-		DZA65_RS19505	0.88	-0.1
4,222,579	+		DZA65_RS19505	0.88	+0.6
4,222,579	+		DZA65_RS19505	0.88	-1.7
4,222,579	+		DZA65_RS19505	0.88	+0.7
4,222,579	+		DZA65_RS19505	0.88	+1.0
4,222,580	-		DZA65_RS19505	0.88	+0.6
4,222,580	-		DZA65_RS19505	0.88	+0.0
4,222,619	+				-0.2