Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19470

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,212,129	-		DZA65_RS19465	0.32	+0.0
4,212,143	+		DZA65_RS19465	0.33	-1.5
4,212,144	-		DZA65_RS19465	0.33	+0.7
4,212,144	-		DZA65_RS19465	0.33	-0.1
4,212,144	-		DZA65_RS19465	0.33	-2.2
4,212,146	+		DZA65_RS19465	0.33	-1.0
4,212,146	+		DZA65_RS19465	0.33	+1.6
4,212,146	+		DZA65_RS19465	0.33	-0.4
4,212,147	-		DZA65_RS19465	0.34	+2.7
4,212,147	-		DZA65_RS19465	0.34	-0.2
4,212,147	-		DZA65_RS19465	0.34	-1.3
4,212,147	-		DZA65_RS19465	0.34	+0.0
4,212,147	-		DZA65_RS19465	0.34	-0.3
4,212,152	+		DZA65_RS19465	0.34	+1.6
4,212,152	+		DZA65_RS19465	0.34	-0.4
4,212,152	+		DZA65_RS19465	0.34	+0.3
4,212,152	+		DZA65_RS19465	0.34	+1.0
4,212,153	-		DZA65_RS19465	0.34	-0.8
4,212,153	-		DZA65_RS19465	0.34	-1.0
4,212,153	-		DZA65_RS19465	0.34	-2.0
4,212,153	-		DZA65_RS19465	0.34	+0.2
4,212,153	-		DZA65_RS19465	0.34	+0.2
4,212,224	+		DZA65_RS19465	0.42	+0.5
4,212,224	+		DZA65_RS19465	0.42	+1.1
4,212,224	+		DZA65_RS19465	0.42	-1.0
4,212,224	+		DZA65_RS19465	0.42	-0.4
4,212,225	-		DZA65_RS19465	0.42	-0.5
4,212,225	-		DZA65_RS19465	0.42	-1.8
4,212,225	-		DZA65_RS19465	0.42	+0.0
4,212,237	+		DZA65_RS19465	0.43	+1.5
4,212,238	-		DZA65_RS19465	0.43	-0.4
4,212,238	-		DZA65_RS19465	0.43	+0.6
4,212,238	-		DZA65_RS19465	0.43	+0.2
4,212,238	-		DZA65_RS19465	0.43	+1.0
4,212,364	-		DZA65_RS19465	0.56	-0.1
4,212,364	-		DZA65_RS19465	0.56	-1.1
4,212,425	+		DZA65_RS19465	0.63	+1.0
4,212,425	+		DZA65_RS19465	0.63	-0.3
4,212,426	-		DZA65_RS19465	0.63	-1.3
4,212,426	-		DZA65_RS19465	0.63	+1.0
4,212,426	-		DZA65_RS19465	0.63	+0.5
4,212,426	-		DZA65_RS19465	0.63	+0.5
4,212,426	-		DZA65_RS19465	0.63	-0.7
4,212,426	-		DZA65_RS19465	0.63	+0.4
4,212,426	-		DZA65_RS19465	0.63	-0.4
4,212,473	+		DZA65_RS19465	0.68	-1.5
4,212,473	+		DZA65_RS19465	0.68	-0.7
4,212,473	+		DZA65_RS19465	0.68	+2.5
4,212,474	-		DZA65_RS19465	0.68	-1.0
4,212,540	+		DZA65_RS19465	0.75	+0.2
4,212,541	-		DZA65_RS19465	0.75	+0.3
4,212,541	-		DZA65_RS19465	0.75	-1.1
4,212,541	-		DZA65_RS19465	0.75	-0.2
4,212,638	+		DZA65_RS19465	0.85	+1.0
4,212,702	-				+0.2
4,212,843	+				+0.7
4,212,843	+				-0.6
4,212,844	-				+1.5
4,212,844	-				-0.5
4,212,844	-				-0.1
4,212,979	+				-0.4
4,212,979	+				+0.2
4,212,998	+				-1.3
4,213,043	+				-0.5
4,213,044	-				+1.8
4,213,044	-				-0.5
4,213,048	+				-0.3
4,213,048	+				+1.3
4,213,048	+				+0.6
4,213,048	+				-1.3
4,213,048	+				+0.5
4,213,048	+				+0.6
4,213,049	-				+0.0
4,213,049	-				+0.7
4,213,049	-				-1.0
4,213,049	-				-0.8
4,213,049	-				-0.2
4,213,049	-				-0.4
4,213,074	+				+0.4
4,213,080	+				-0.7
4,213,080	+				-0.4
4,213,080	+				-2.1
4,213,081	-				-0.7
4,213,081	-				-1.0
4,213,117	+				+2.2
4,213,117	+				-1.2
4,213,117	+				-0.9
4,213,117	+				-0.5
4,213,117	+				-0.5
4,213,117	+				+0.2
4,213,117	+				+0.0
4,213,117	+				+0.7
4,213,117	+				+0.8
4,213,117	+				-2.7
4,213,118	-				+1.0
4,213,118	-				-0.1
4,213,118	-				-1.1
4,213,118	-				-1.0
4,213,168	+		DZA65_RS19470	0.11	-0.7
4,213,168	+		DZA65_RS19470	0.11	+0.3
4,213,168	+		DZA65_RS19470	0.11	-1.0
4,213,169	-		DZA65_RS19470	0.11	-0.4
4,213,342	+		DZA65_RS19470	0.33	+0.4
4,213,342	+		DZA65_RS19470	0.33	+0.0
4,213,342	+		DZA65_RS19470	0.33	-1.1
4,213,342	+		DZA65_RS19470	0.33	-1.2
4,213,343	-		DZA65_RS19470	0.34	+0.2
4,213,343	-		DZA65_RS19470	0.34	-0.3
4,213,343	-		DZA65_RS19470	0.34	+1.0
4,213,343	-		DZA65_RS19470	0.34	+0.3
4,213,343	-		DZA65_RS19470	0.34	+0.2
4,213,407	+		DZA65_RS19470	0.42	-0.9
4,213,407	+		DZA65_RS19470	0.42	-2.4
4,213,408	-		DZA65_RS19470	0.42	-0.3
4,213,408	-		DZA65_RS19470	0.42	-0.5
4,213,408	-		DZA65_RS19470	0.42	-0.1
4,213,423	+		DZA65_RS19470	0.44	+0.0
4,213,510	+		DZA65_RS19470	0.55	-0.6
4,213,510	+		DZA65_RS19470	0.55	-2.8
4,213,511	-		DZA65_RS19470	0.55	+1.0
4,213,511	-		DZA65_RS19470	0.55	+0.6
4,213,511	-		DZA65_RS19470	0.55	+0.0
4,213,511	-		DZA65_RS19470	0.55	-0.4
4,213,575	+		DZA65_RS19470	0.63	-0.4
4,213,575	+		DZA65_RS19470	0.63	-2.3
4,213,575	+		DZA65_RS19470	0.63	-1.4
4,213,575	+		DZA65_RS19470	0.63	-0.4
4,213,576	-		DZA65_RS19470	0.63	-0.7
4,213,603	+		DZA65_RS19470	0.67	+0.6
4,213,603	+		DZA65_RS19470	0.67	-0.2
4,213,604	-		DZA65_RS19470	0.67	-1.4
4,213,699	+		DZA65_RS19470	0.79	-2.5
4,213,699	+		DZA65_RS19470	0.79	-1.8
4,213,700	-		DZA65_RS19470	0.79	-0.6
4,213,700	-		DZA65_RS19470	0.79	-1.0
4,213,792	+				+0.8
4,213,792	+				+1.4
4,213,793	-				+0.4
4,213,793	-				+5.2
4,213,793	-				+0.6
4,213,795	+				+0.7
4,213,795	+				+0.2
4,213,795	+				+1.0
4,213,795	+				+0.6
4,213,795	+				+1.9
4,213,795	+				-1.2
4,213,795	+				+1.5
4,213,796	-				+0.3
4,213,796	-				-1.3
4,213,796	-				-0.7
4,213,796	-				-0.9
4,213,924	+				-0.5
4,213,925	-				-0.1
4,213,927	+				+0.6
4,213,927	+				-1.3
4,213,927	+				+1.4
4,213,927	+				+1.0
4,213,928	-				-0.1
4,213,928	-				-0.3
4,213,928	-				-0.1
4,213,928	-				-0.4
4,213,928	-				-0.8
4,213,928	-				-0.9
4,213,928	-				-1.0
4,213,928	-				-1.5
4,213,929	+				-0.8
4,213,929	+				+2.0
4,213,929	+				-1.3
4,213,929	+				-0.5
4,213,929	+				+0.3
4,213,930	-				+0.2
4,213,930	-				+2.3
4,213,930	-				-0.7
4,213,930	-				+1.5
4,213,944	-				+0.5
4,213,944	-				-2.9
4,213,944	-				+0.5
4,213,956	+				-0.2
4,213,956	+				-1.3
4,213,957	-				+0.6
4,214,010	+				-0.1
4,214,010	+				-1.5
4,214,011	-				-0.5
4,214,011	-				+2.6
4,214,071	+				+0.0
4,214,531	-		DZA65_RS19475	0.45	+0.3
4,214,568	+		DZA65_RS19475	0.48	-0.3
4,214,572	-		DZA65_RS19475	0.48	-1.5
4,214,605	+		DZA65_RS19475	0.50	-1.3
4,214,732	-		DZA65_RS19475	0.60	-2.0
4,214,732	-		DZA65_RS19475	0.60	-0.5
4,214,732	-		DZA65_RS19475	0.60	-0.4