Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19310

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,173,171	-		DZA65_RS19305	0.76	-0.1
4,173,171	-		DZA65_RS19305	0.76	+0.4
4,173,171	-		DZA65_RS19305	0.76	-0.8
4,173,171	-		DZA65_RS19305	0.76	+1.0
4,173,171	-		DZA65_RS19305	0.76	-0.2
4,173,347	+		DZA65_RS19305	0.83	+0.7
4,173,347	+		DZA65_RS19305	0.83	+1.7
4,173,347	+		DZA65_RS19305	0.83	-1.6
4,173,374	+		DZA65_RS19305	0.84	+0.7
4,173,395	+		DZA65_RS19305	0.85	-0.2
4,173,395	+		DZA65_RS19305	0.85	+1.6
4,173,395	+		DZA65_RS19305	0.85	-0.6
4,173,395	+		DZA65_RS19305	0.85	+0.1
4,173,396	-		DZA65_RS19305	0.85	+0.3
4,173,396	-		DZA65_RS19305	0.85	-0.3
4,173,396	-		DZA65_RS19305	0.85	-1.4
4,173,396	-		DZA65_RS19305	0.85	-0.2
4,173,396	-		DZA65_RS19305	0.85	-1.0
4,173,399	+		DZA65_RS19305	0.86	+0.2
4,173,400	-		DZA65_RS19305	0.86	+3.3
4,173,474	-		DZA65_RS19305	0.89	+0.4
4,173,481	+		DZA65_RS19305	0.89	+1.8
4,173,482	-		DZA65_RS19305	0.89	-0.6
4,173,524	+				+1.6
4,173,524	+				+1.0
4,173,524	+				-0.6
4,173,524	+				-0.8
4,173,524	+				-0.5
4,173,525	-				+0.2
4,173,525	-				+0.6
4,173,555	-				-0.9
4,173,578	+				-0.6
4,173,578	+				-0.1
4,173,578	+				-1.2
4,173,578	+				-0.3
4,173,578	+				-0.7
4,173,578	+				-0.4
4,173,578	+				-0.8
4,173,578	+				+0.0
4,173,579	-				-0.3
4,173,579	-				-0.0
4,173,579	-				+0.4
4,173,579	-				-0.6
4,173,579	-				+1.8
4,173,579	-				-0.5
4,173,579	-				+0.6
4,173,579	-				-1.6
4,173,579	-				-1.6
4,173,635	+				-1.2
4,173,635	+				+0.0
4,173,635	+				-0.6
4,173,635	+				-1.1
4,173,635	+				+0.2
4,173,636	-				-0.1
4,173,636	-				+0.4
4,173,636	-				-1.3
4,173,636	-				-0.4
4,173,644	+				+0.1
4,173,644	+				+0.4
4,173,644	+				-0.6
4,173,644	+				+1.3
4,173,645	-				+0.0
4,173,645	-				-0.1
4,173,648	+				-0.7
4,173,649	-				+0.7
4,173,649	-				+2.6
4,173,679	+				+0.8
4,173,679	+				+2.3
4,173,679	+				-2.2
4,173,679	+				+0.4
4,173,679	+				-0.2
4,173,680	-				+0.0
4,173,680	-				+0.3
4,173,680	-				-1.3
4,173,680	-				+2.0
4,173,680	-				-0.6
4,173,736	-				-1.0
4,173,740	+				-2.3
4,173,741	-				-1.2
4,173,788	-				-0.6
4,173,788	-				+1.0
4,173,793	-				-1.0
4,173,809	+				-0.4
4,173,837	+				+0.2
4,173,838	-				+1.7
4,173,838	-				-0.2
4,173,852	+				-0.2
4,173,852	+				+1.8
4,173,852	+				-0.7
4,173,852	+				-0.7
4,173,852	+				-0.3
4,173,852	+				-0.8
4,173,852	+				+1.1
4,173,852	+				+0.9
4,173,853	-				-2.2
4,173,853	-				-0.7
4,173,856	+				+0.3
4,173,856	+				-2.2
4,173,856	+				-1.3
4,173,856	+				-0.8
4,173,856	+				+1.9
4,173,856	+				-0.9
4,173,856	+				+1.0
4,173,856	+				+1.0
4,173,856	+				-1.4
4,173,856	+				-1.5
4,173,856	+				-1.4
4,173,856	+				-0.6
4,173,857	-				-0.2
4,173,858	+				-0.4
4,173,858	+				-0.2
4,173,859	-				+0.2
4,173,859	-				-0.1
4,173,859	-				-0.6
4,173,859	-				-0.6
4,173,859	-				-0.4
4,173,859	-				-0.5
4,173,863	+				+0.6
4,173,864	-				-1.0
4,173,868	-				+1.2
4,173,868	-				-0.6
4,173,940	-				+1.5
4,173,969	+				+0.0
4,173,969	+				+1.2
4,173,969	+				+1.7
4,173,969	+				-0.6
4,173,969	+				+0.6
4,173,969	+				-0.4
4,173,969	+				-0.7
4,173,969	+				-1.3
4,173,969	+				+1.8
4,173,970	-				-0.4
4,173,970	-				-0.6
4,173,970	-				-0.6
4,173,970	-				-0.1
4,173,970	-				-1.1
4,173,970	-				+0.7
4,173,970	-				+0.8
4,173,970	-				-1.2
4,173,970	-				-0.7
4,173,970	-				+0.0
4,173,970	-				+0.0
4,173,970	-				+1.6
4,173,970	-				-2.2
4,173,970	-				-1.6
4,173,978	+				+0.4
4,173,978	+				+0.2
4,173,978	+				-2.7
4,173,978	+				+0.0
4,173,978	+				+0.2
4,173,978	+				-0.2
4,173,978	+				+0.3
4,173,979	-				-0.6
4,173,979	-				-1.3
4,173,989	+				+0.4
4,173,989	+				-0.2
4,173,990	-				-0.3
4,173,990	-				+0.2
4,174,061	+				+0.7
4,174,061	+				+0.2
4,174,061	+				+1.0
4,174,062	-				+1.0
4,174,062	-				+0.1
4,174,128	+				+0.6
4,174,128	+				+1.3
4,174,129	-				-1.3
4,174,135	+				-0.3
4,174,135	+				+0.5
4,174,135	+				+0.4
4,174,144	+				-2.6
4,174,144	+				-2.3
4,174,144	+				-1.3
4,174,144	+				+1.1
4,174,144	+				+0.4
4,174,145	-				-0.2
4,174,145	-				-0.2
4,174,145	-				-0.8
4,174,186	-				+0.0
4,174,186	-				-0.4
4,174,195	+				-1.0
4,174,262	+				-0.6
4,174,263	-				+2.5
4,174,286	-				-0.4
4,174,318	+				-1.0
4,174,382	+				+0.0
4,174,382	+				-1.0
4,174,382	+				+0.0
4,174,382	+				-1.2
4,174,382	+				+1.6
4,174,382	+				+0.3
4,174,382	+				-2.9
4,174,382	+				+0.0
4,174,382	+				-1.0
4,174,382	+				+0.6
4,174,383	-				-0.0
4,174,383	-				+0.2
4,174,383	-				-0.6
4,174,383	-				+2.0
4,174,383	-				+0.3
4,174,384	+				-0.6
4,174,406	-				+0.4
4,174,501	+		DZA65_RS19310	0.12	-3.6
4,174,502	-				+1.0
4,174,502	-		DZA65_RS19310	0.12	-1.3
4,174,621	+		DZA65_RS19310	0.16	-1.8
4,174,692	+		DZA65_RS19310	0.19	-0.3
4,174,693	-		DZA65_RS19310	0.19	-0.2
4,175,189	+		DZA65_RS19310	0.36	+1.3
4,175,189	+		DZA65_RS19310	0.36	+0.5
4,175,189	+		DZA65_RS19310	0.36	-2.0
4,175,220	-		DZA65_RS19310	0.37	-1.0
4,175,481	+		DZA65_RS19310	0.46	-1.2
4,175,482	-		DZA65_RS19310	0.46	-1.0
4,175,482	-		DZA65_RS19310	0.46	-1.9
4,175,504	+		DZA65_RS19310	0.46	-0.2
4,175,504	+		DZA65_RS19310	0.46	+1.0
4,175,505	-		DZA65_RS19310	0.46	-2.6
4,175,540	-		DZA65_RS19310	0.48	-0.3
4,175,545	+		DZA65_RS19310	0.48	+1.0
4,175,546	-		DZA65_RS19310	0.48	+0.7
4,175,546	-		DZA65_RS19310	0.48	+0.1
4,175,546	-		DZA65_RS19310	0.48	+0.2
4,175,594	+		DZA65_RS19310	0.49	+0.7
4,175,594	+				+0.0
4,175,595	-		DZA65_RS19310	0.50	-0.6
4,175,595	-		DZA65_RS19310	0.50	+1.0
4,175,819	+		DZA65_RS19310	0.57	+2.2
4,175,820	-		DZA65_RS19310	0.57	+0.6
4,175,820	-		DZA65_RS19310	0.57	-1.0
4,175,868	+		DZA65_RS19310	0.59	+0.8
4,175,930	-		DZA65_RS19310	0.61	+0.0
4,176,008	+		DZA65_RS19310	0.64	-1.2
4,176,009	-		DZA65_RS19310	0.64	-0.6
4,176,048	-		DZA65_RS19310	0.65	-0.9
4,176,113	+		DZA65_RS19310	0.67	-0.1
4,176,113	+		DZA65_RS19310	0.67	+2.3
4,176,172	+		DZA65_RS19310	0.69	-1.0
4,176,304	+		DZA65_RS19310	0.74	+0.0
4,176,409	+		DZA65_RS19310	0.77	+0.0
4,176,409	+		DZA65_RS19310	0.77	-0.7
4,176,409	+		DZA65_RS19310	0.77	-2.4
4,176,409	+		DZA65_RS19310	0.77	-2.7
4,176,409	+		DZA65_RS19310	0.77	+0.1
4,176,409	+		DZA65_RS19310	0.77	-1.0
4,176,409	+		DZA65_RS19310	0.77	-0.7
4,176,410	-		DZA65_RS19310	0.77	-0.6
4,176,410	-		DZA65_RS19310	0.77	-0.9
4,176,410	-		DZA65_RS19310	0.77	-0.6
4,176,410	-		DZA65_RS19310	0.77	+0.0
4,176,410	-		DZA65_RS19310	0.77	-1.6
4,176,410	-		DZA65_RS19310	0.77	+0.0
4,176,630	+		DZA65_RS19310	0.85	-0.4
4,176,630	+		DZA65_RS19310	0.85	+0.2
4,176,630	+		DZA65_RS19310	0.85	+2.0
4,176,632	+		DZA65_RS19310	0.85	+0.6
4,176,632	+		DZA65_RS19310	0.85	+0.0
4,176,632	+		DZA65_RS19310	0.85	+1.8
4,176,632	+		DZA65_RS19310	0.85	+0.8
4,176,632	+		DZA65_RS19310	0.85	-1.2
4,176,632	+		DZA65_RS19310	0.85	-1.3
4,176,632	+		DZA65_RS19310	0.85	-0.7
4,176,632	+		DZA65_RS19310	0.85	-1.6
4,176,632	+		DZA65_RS19310	0.85	+0.4
4,176,632	+		DZA65_RS19310	0.85	-0.3
4,176,632	+		DZA65_RS19310	0.85	-0.8
4,176,632	+		DZA65_RS19310	0.85	-0.1
4,176,632	+				+0.0
4,176,632	+		DZA65_RS19310	0.85	-2.3
4,176,633	-		DZA65_RS19310	0.85	+0.0
4,176,633	-		DZA65_RS19310	0.85	-1.8
4,176,633	-		DZA65_RS19310	0.85	-0.6
4,176,633	-		DZA65_RS19310	0.85	+0.4
4,176,633	-		DZA65_RS19310	0.85	-1.5
4,176,633	-		DZA65_RS19310	0.85	-0.2
4,176,633	-		DZA65_RS19310	0.85	-1.0
4,176,633	-		DZA65_RS19310	0.85	-1.4
4,176,633	-		DZA65_RS19310	0.85	-1.0
4,176,633	-		DZA65_RS19310	0.85	+1.0
4,176,633	-		DZA65_RS19310	0.85	+0.4
4,176,633	-		DZA65_RS19310	0.85	-1.7
4,176,633	-		DZA65_RS19310	0.85	-1.8
4,176,633	-		DZA65_RS19310	0.85	+0.3
4,176,633	-		DZA65_RS19310	0.85	-0.8
4,177,079	+				-1.4
4,177,080	-				-0.1
4,177,080	-				+0.0
4,177,097	+				+4.2
4,177,097	+				-1.3
4,177,097	+				+0.2
4,177,097	+				+1.3
4,177,097	+				+0.2
4,177,098	-				+0.0
4,177,098	-				-1.1
4,177,100	+				+1.0
4,177,100	+				-0.5
4,177,100	+				+0.1
4,177,101	-				+0.3
4,177,101	-				+0.3
4,177,155	+				-0.6
4,177,155	+				+0.3
4,177,155	+				-0.8
4,177,155	+				-2.3
4,177,155	+				-0.4
4,177,155	+				-0.5
4,177,156	-				+0.2
4,177,156	-				-2.2
4,177,156	-				+1.3
4,177,156	-				-0.6
4,177,156	-				+0.2
4,177,156	-				+1.0
4,177,156	-				-0.3
4,177,156	-				+0.3
4,177,181	-				-1.8
4,177,191	+				-0.1
4,177,191	+				-0.6
4,177,425	+		DZA65_RS19315	0.43	+0.7
4,177,471	+		DZA65_RS19315	0.50	-0.7
4,177,471	+		DZA65_RS19315	0.50	+0.0
4,177,472	-		DZA65_RS19315	0.50	-0.6
4,177,472	-		DZA65_RS19315	0.50	+1.2
4,177,556	+		DZA65_RS19315	0.63	-0.5
4,177,557	-		DZA65_RS19315	0.63	-1.0
4,177,557	-		DZA65_RS19315	0.63	-1.9
4,177,557	-		DZA65_RS19315	0.63	-1.0
4,177,630	+		DZA65_RS19315	0.74	-0.1
4,177,681	-		DZA65_RS19315	0.82	+0.2
4,177,681	-		DZA65_RS19315	0.82	-0.4
4,177,761	-				-1.4
4,177,887	+				+0.2
4,177,923	+				+0.2
4,177,923	+				+0.3
4,177,923	+				+0.2
4,177,924	-				-0.2
4,177,955	-				-0.6
4,178,001	+		DZA65_RS19320	0.13	-1.6
4,178,002	-		DZA65_RS19320	0.13	-1.6
4,178,002	-		DZA65_RS19320	0.13	+0.1
4,178,006	+		DZA65_RS19320	0.14	-0.3