Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19170

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,144,063	-		DZA65_RS19165	0.77	+1.0
4,144,063	-		DZA65_RS19165	0.77	+1.0
4,144,093	-		DZA65_RS19165	0.84	-0.6
4,144,110	-		DZA65_RS19165	0.88	+1.6
4,144,131	-				-0.8
4,144,131	-				+0.3
4,144,173	-				+0.8
4,144,173	-				+0.4
4,144,173	-				-0.6
4,144,173	-				-0.6
4,144,173	-				+0.8
4,144,173	-				+0.4
4,144,283	+				+1.3
4,144,338	+				-0.0
4,144,338	+				+0.3
4,144,338	+				-0.2
4,144,339	-				-0.6
4,144,426	+				+0.6
4,144,429	+				-1.3
4,144,472	+				-0.7
4,144,553	+				-0.0
4,144,553	+				+0.0
4,144,554	-				+0.2
4,144,564	+				+1.2
4,144,612	-				-1.8
4,144,626	+				-0.2
4,144,627	-				-1.2
4,144,630	+				+1.3
4,144,630	+				-0.3
4,144,630	+				-2.1
4,144,630	+				-0.3
4,144,630	+				+2.0
4,144,630	+				+2.0
4,144,630	+				-0.3
4,144,630	+				-0.7
4,144,631	-				+1.7
4,144,631	-				+0.7
4,144,631	-				-1.0
4,144,631	-				-2.0
4,144,631	-				-0.9
4,144,631	-				+0.4
4,144,631	-				-1.8
4,144,631	-				-0.4
4,144,631	-				+0.7
4,144,648	+				-0.4
4,144,648	+				-0.6
4,144,648	+				-2.8
4,144,649	-				-0.9
4,144,689	+				-1.3
4,144,722	+				+4.9
4,144,811	+				+0.2
4,144,920	+				-0.7
4,144,931	-				+1.0
4,144,931	-				-2.0
4,144,931	-				-0.0
4,144,934	+				+2.4
4,144,935	-				+1.0
4,144,935	-				+0.3
4,144,935	-				+0.6
4,144,938	+				-1.6
4,144,938	+				+0.4
4,144,943	-				+0.2
4,144,943	-				+0.3
4,144,943	-				-0.7
4,144,943	-				+0.2
4,144,962	-				+1.3
4,144,973	-				-2.9
4,145,004	+				-0.8
4,145,027	+				-1.7
4,145,027	+				-1.0
4,145,027	+				-1.9
4,145,027	+				+0.1
4,145,028	-				-1.1
4,145,028	-				-1.2
4,145,028	-				+1.4
4,145,028	-				-0.8
4,145,032	+				-0.0
4,145,032	+				+0.4
4,145,032	+				-0.0
4,145,032	+				-0.6
4,145,032	+				+2.0
4,145,032	+				-0.9
4,145,032	+				+0.8
4,145,033	-				+0.6
4,145,033	-				-0.4
4,145,033	-				+1.8
4,145,033	-				-0.0
4,145,033	-				-0.0
4,145,033	-				-1.0
4,145,033	-				-0.9
4,145,075	-				+1.6
4,145,083	+		DZA65_RS19170	0.11	-0.3
4,145,084	-		DZA65_RS19170	0.11	-0.0
4,145,084	-		DZA65_RS19170	0.11	+0.2
4,145,084	-		DZA65_RS19170	0.11	-0.0
4,145,093	+		DZA65_RS19170	0.13	-0.5
4,145,093	+		DZA65_RS19170	0.13	+0.1
4,145,093	+		DZA65_RS19170	0.13	+0.3
4,145,093	+		DZA65_RS19170	0.13	+0.4
4,145,093	+		DZA65_RS19170	0.13	+0.5
4,145,093	+		DZA65_RS19170	0.13	-0.7
4,145,093	+		DZA65_RS19170	0.13	+0.1
4,145,094	-		DZA65_RS19170	0.13	-2.3
4,145,094	-		DZA65_RS19170	0.13	-0.0
4,145,094	-		DZA65_RS19170	0.13	+0.3
4,145,094	-		DZA65_RS19170	0.13	+1.2
4,145,094	-		DZA65_RS19170	0.13	+3.3
4,145,094	-		DZA65_RS19170	0.13	+0.4
4,145,094	-		DZA65_RS19170	0.13	+0.7
4,145,189	-		DZA65_RS19170	0.34	-0.8
4,145,227	+		DZA65_RS19170	0.42	-0.6
4,145,229	-		DZA65_RS19170	0.42	-0.0
4,145,244	+		DZA65_RS19170	0.46	+1.8
4,145,244	+		DZA65_RS19170	0.46	+0.6
4,145,245	-		DZA65_RS19170	0.46	-0.6
4,145,250	+		DZA65_RS19170	0.47	-0.2
4,145,251	-		DZA65_RS19170	0.47	+0.8
4,145,262	+		DZA65_RS19170	0.50	-1.0
4,145,262	+		DZA65_RS19170	0.50	+0.7
4,145,262	+		DZA65_RS19170	0.50	-0.5
4,145,262	+		DZA65_RS19170	0.50	+0.8
4,145,278	+		DZA65_RS19170	0.53	+0.2
4,145,297	+				-0.0
4,145,297	+		DZA65_RS19170	0.57	-1.3
4,145,297	+		DZA65_RS19170	0.57	+0.1
4,145,297	+		DZA65_RS19170	0.57	-0.0
4,145,297	+		DZA65_RS19170	0.57	-0.4
4,145,297	+		DZA65_RS19170	0.57	+2.0
4,145,321	+		DZA65_RS19170	0.62	+0.8
4,145,391	+		DZA65_RS19170	0.77	-0.9
4,145,417	+		DZA65_RS19170	0.83	-0.8
4,145,424	-		DZA65_RS19170	0.85	+0.4
4,145,435	+		DZA65_RS19170	0.87	+0.6
4,145,435	+		DZA65_RS19170	0.87	+0.5
4,145,435	+		DZA65_RS19170	0.87	-0.6
4,145,493	-				-0.0
4,145,505	+				+0.1
4,145,505	+				-1.1
4,145,506	-				-0.7
4,145,520	+				+0.3
4,145,521	-				-2.2
4,145,524	+				-0.9
4,145,525	-				-1.0
4,145,525	-				-0.6
4,145,527	-				-0.4
4,145,527	-				+1.2
4,145,552	+				+0.8
4,145,559	+				-0.8
4,145,560	-				-0.2
4,145,604	+				+1.0
4,145,605	-				-0.9
4,145,605	-				-0.0
4,145,613	+				+0.3
4,145,614	-				-0.3
4,145,630	+				-0.0
4,145,630	+				-0.5
4,145,630	+				+0.7
4,145,639	-				-1.2
4,145,639	-				+0.2
4,145,639	-				-0.2
4,145,656	+				-1.6
4,145,656	+				+1.6
4,145,656	+				+0.4
4,145,705	+				-2.2
4,145,710	+				-1.4
4,145,710	+				-1.4
4,145,710	+				-0.2
4,145,711	-				+0.0
4,145,711	-				-1.0
4,145,713	-				+1.0
4,145,713	-				-3.1
4,145,713	-				-1.3
4,145,936	+		DZA65_RS19175	0.27	-2.5
4,146,007	+		DZA65_RS19175	0.34	-0.8
4,146,007	+		DZA65_RS19175	0.34	+0.3
4,146,007	+		DZA65_RS19175	0.34	-1.0
4,146,007	+		DZA65_RS19175	0.34	-0.8
4,146,008	-		DZA65_RS19175	0.35	-0.8
4,146,008	-		DZA65_RS19175	0.35	-0.2
4,146,008	-		DZA65_RS19175	0.35	-2.0
4,146,008	-		DZA65_RS19175	0.35	-0.5
4,146,019	+		DZA65_RS19175	0.36	-0.9
4,146,019	+		DZA65_RS19175	0.36	-0.9
4,146,019	+		DZA65_RS19175	0.36	-1.2
4,146,019	+		DZA65_RS19175	0.36	-2.1
4,146,019	+		DZA65_RS19175	0.36	-2.2
4,146,019	+		DZA65_RS19175	0.36	+1.0
4,146,020	-		DZA65_RS19175	0.36	-0.9
4,146,020	-		DZA65_RS19175	0.36	-0.4
4,146,020	-		DZA65_RS19175	0.36	-1.4
4,146,020	-		DZA65_RS19175	0.36	-2.2
4,146,025	+		DZA65_RS19175	0.36	-1.3
4,146,025	+		DZA65_RS19175	0.36	-0.6
4,146,025	+		DZA65_RS19175	0.36	-0.8
4,146,025	+		DZA65_RS19175	0.36	+0.2
4,146,026	-		DZA65_RS19175	0.36	-0.3
4,146,026	-		DZA65_RS19175	0.36	-1.3
4,146,026	-		DZA65_RS19175	0.36	-0.5
4,146,026	-		DZA65_RS19175	0.36	-2.0
4,146,266	-		DZA65_RS19175	0.60	-0.1
4,146,303	-		DZA65_RS19175	0.64	-1.6
4,146,338	+		DZA65_RS19175	0.67	+1.3
4,146,338	+		DZA65_RS19175	0.67	-1.5
4,146,339	-		DZA65_RS19175	0.67	-1.1
4,146,339	-		DZA65_RS19175	0.67	-1.2
4,146,339	-		DZA65_RS19175	0.67	-1.6
4,146,339	-		DZA65_RS19175	0.67	-1.4
4,146,339	-		DZA65_RS19175	0.67	-2.6
4,146,421	+		DZA65_RS19175	0.76	-1.2
4,146,421	+		DZA65_RS19175	0.76	-1.3
4,146,439	+		DZA65_RS19175	0.77	-2.0
4,146,439	+		DZA65_RS19175	0.77	+2.0
4,146,439	+		DZA65_RS19175	0.77	-1.0
4,146,439	+		DZA65_RS19175	0.77	-0.4
4,146,440	-		DZA65_RS19175	0.78	-0.4
4,146,440	-		DZA65_RS19175	0.78	-1.1
4,146,440	-		DZA65_RS19175	0.78	-1.5
4,146,440	-		DZA65_RS19175	0.78	-2.5
4,146,440	-		DZA65_RS19175	0.78	-0.1
4,146,440	-		DZA65_RS19175	0.78	-1.2