Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18930

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,087,743	+		DZA65_RS18925	0.51	-0.0
4,087,744	-		DZA65_RS18925	0.51	-0.8
4,087,744	-		DZA65_RS18925	0.51	+0.6
4,087,746	+		DZA65_RS18925	0.51	+0.6
4,087,746	+		DZA65_RS18925	0.51	+0.3
4,087,746	+		DZA65_RS18925	0.51	+0.5
4,087,746	+		DZA65_RS18925	0.51	-0.0
4,087,746	+		DZA65_RS18925	0.51	+0.4
4,087,746	+				-0.0
4,087,746	+		DZA65_RS18925	0.51	-0.8
4,087,746	+		DZA65_RS18925	0.51	+0.5
4,087,746	+		DZA65_RS18925	0.51	+1.4
4,087,746	+		DZA65_RS18925	0.51	-0.4
4,087,746	+		DZA65_RS18925	0.51	+0.4
4,087,747	-		DZA65_RS18925	0.51	+3.0
4,087,747	-		DZA65_RS18925	0.51	-0.1
4,087,747	-		DZA65_RS18925	0.51	-0.5
4,087,747	-		DZA65_RS18925	0.51	-0.6
4,087,780	+				-1.0
4,087,792	+		DZA65_RS18925	0.55	+2.0
4,087,852	+		DZA65_RS18925	0.59	-1.0
4,087,852	+		DZA65_RS18925	0.59	+0.4
4,087,852	+		DZA65_RS18925	0.59	-1.8
4,087,853	-		DZA65_RS18925	0.60	-0.2
4,087,853	-		DZA65_RS18925	0.60	+0.2
4,087,918	+		DZA65_RS18925	0.65	+0.6
4,087,918	+		DZA65_RS18925	0.65	-0.2
4,087,965	+		DZA65_RS18925	0.68	-1.0
4,088,344	+				+0.0
4,088,344	+				-0.0
4,088,345	-				+1.7
4,088,352	+				+1.8
4,088,466	+				+0.8
4,088,466	+				-0.6
4,088,466	+				-1.7
4,088,466	+				-0.0
4,088,466	+				+0.8
4,088,466	+				+2.0
4,088,466	+				-0.0
4,088,466	+				+1.0
4,088,467	-				+0.5
4,088,467	-				-0.0
4,088,467	-				-2.4
4,088,467	-				-1.2
4,088,467	-				-1.2
4,088,467	-				-0.3
4,088,467	-				-0.5
4,088,473	+				-1.0
4,088,473	+				+2.0
4,088,473	+				-1.4
4,088,473	+				+1.0
4,088,473	+				-0.3
4,088,473	+				-1.0
4,088,473	+				+1.1
4,088,473	+				-0.1
4,088,474	-				+1.0
4,088,474	-				-1.0
4,088,474	-				+0.5
4,088,474	-				-1.0
4,088,474	-				-0.0
4,088,474	-				-0.0
4,088,518	+				-0.6
4,088,518	+				+1.0
4,088,519	-				+0.6
4,088,519	-				-0.9
4,088,581	+				+1.0
4,088,581	+				+0.5
4,088,581	+				+1.1
4,088,582	-				-1.6
4,088,582	-				+0.0
4,088,582	-				-0.6
4,088,582	-				-0.8
4,088,582	-				+0.2
4,088,582	-				-1.0
4,088,582	-				-1.6
4,088,582	-				+0.1
4,088,582	-				+1.2
4,088,582	-				+2.0
4,088,582	-				+0.4
4,088,582	-				+0.8
4,088,587	+				+1.8
4,088,593	+				+0.6
4,088,593	+				+0.0
4,088,689	+				-0.6
4,088,765	-		DZA65_RS18930	0.16	-0.6
4,089,083	+		DZA65_RS18930	0.44	-0.0
4,089,083	+		DZA65_RS18930	0.44	+0.2
4,089,084	-		DZA65_RS18930	0.44	-1.6
4,089,128	-		DZA65_RS18930	0.47	+0.7
4,089,128	-		DZA65_RS18930	0.47	-0.0
4,089,212	+		DZA65_RS18930	0.55	-0.6
4,089,212	+		DZA65_RS18930	0.55	-1.5
4,089,212	+		DZA65_RS18930	0.55	+1.3
4,089,212	+		DZA65_RS18930	0.55	-0.0
4,089,212	+		DZA65_RS18930	0.55	+4.1
4,089,212	+		DZA65_RS18930	0.55	-0.7
4,089,212	+		DZA65_RS18930	0.55	+1.0
4,089,212	+		DZA65_RS18930	0.55	+0.7
4,089,212	+		DZA65_RS18930	0.55	+1.0
4,089,212	+		DZA65_RS18930	0.55	+1.0
4,089,212	+		DZA65_RS18930	0.55	-1.0
4,089,213	-		DZA65_RS18930	0.55	+0.6
4,089,213	-		DZA65_RS18930	0.55	+0.3
4,089,213	-		DZA65_RS18930	0.55	-1.1
4,089,213	-		DZA65_RS18930	0.55	-0.8
4,089,213	-		DZA65_RS18930	0.55	+0.7
4,089,213	-		DZA65_RS18930	0.55	+0.0
4,089,213	-		DZA65_RS18930	0.55	-1.0
4,089,295	+		DZA65_RS18930	0.62	-0.0
4,089,295	+				-0.6
4,089,295	+		DZA65_RS18930	0.62	-1.0
4,089,295	+		DZA65_RS18930	0.62	-0.6
4,089,295	+		DZA65_RS18930	0.62	+0.2
4,089,296	-		DZA65_RS18930	0.62	+0.4
4,089,296	-		DZA65_RS18930	0.62	-1.0
4,089,296	-		DZA65_RS18930	0.62	-0.3
4,089,296	-		DZA65_RS18930	0.62	-0.0
4,089,296	-		DZA65_RS18930	0.62	-0.8
4,089,311	+		DZA65_RS18930	0.64	+0.7
4,089,311	+		DZA65_RS18930	0.64	-1.2
4,089,311	+		DZA65_RS18930	0.64	-1.5
4,089,311	+		DZA65_RS18930	0.64	+2.0
4,089,311	+		DZA65_RS18930	0.64	+1.0
4,089,311	+		DZA65_RS18930	0.64	-2.3
4,089,311	+		DZA65_RS18930	0.64	+0.1
4,089,311	+		DZA65_RS18930	0.64	-1.0
4,089,312	-		DZA65_RS18930	0.64	+1.4
4,089,312	-		DZA65_RS18930	0.64	-0.6
4,089,312	-		DZA65_RS18930	0.64	-1.3
4,089,312	-		DZA65_RS18930	0.64	+1.2
4,089,312	-		DZA65_RS18930	0.64	+0.6
4,089,314	+		DZA65_RS18930	0.64	-0.8
4,089,314	+		DZA65_RS18930	0.64	-2.0
4,089,314	+		DZA65_RS18930	0.64	-1.3
4,089,314	+		DZA65_RS18930	0.64	-0.9
4,089,314	+		DZA65_RS18930	0.64	-1.1
4,089,314	+		DZA65_RS18930	0.64	+0.1
4,089,315	-		DZA65_RS18930	0.64	+0.6
4,089,315	-		DZA65_RS18930	0.64	-0.3
4,089,386	+		DZA65_RS18930	0.70	+0.4
4,089,386	+		DZA65_RS18930	0.70	-0.3
4,089,386	+		DZA65_RS18930	0.70	+0.1
4,089,386	+		DZA65_RS18930	0.70	-0.3
4,089,386	+		DZA65_RS18930	0.70	+1.5
4,089,386	+		DZA65_RS18930	0.70	+0.4
4,089,386	+		DZA65_RS18930	0.70	+3.5
4,089,387	-		DZA65_RS18930	0.70	-0.2
4,089,387	-		DZA65_RS18930	0.70	-1.8
4,089,387	-		DZA65_RS18930	0.70	-0.8
4,089,387	-		DZA65_RS18930	0.70	-1.0
4,089,387	-		DZA65_RS18930	0.70	+0.3
4,089,480	-		DZA65_RS18930	0.78	+0.7
4,089,545	+		DZA65_RS18930	0.84	-0.5
4,089,545	+		DZA65_RS18930	0.84	+0.6
4,089,546	-		DZA65_RS18930	0.84	-0.6
4,089,546	-		DZA65_RS18930	0.84	+0.2
4,089,546	-		DZA65_RS18930	0.84	-0.3
4,089,546	-		DZA65_RS18930	0.84	-0.2
4,089,648	+				-1.0
4,089,648	+				-0.4
4,089,648	+				-1.4
4,089,648	+				-0.2
4,089,649	-				+0.4
4,089,649	-				+0.2
4,089,649	-				-0.0
4,089,708	-				-1.2
4,089,739	+				+1.2
4,089,747	+				-1.1
4,089,748	-				-1.4
4,089,777	+				-1.1
4,089,778	-				-1.5
4,089,804	+				+0.6
4,089,827	+				-0.3
4,089,828	-				+2.6
4,089,837	-				+0.1
4,089,845	-				-0.9
4,090,143	+		DZA65_RS18935	0.36	-0.2
4,090,143	+		DZA65_RS18935	0.36	-1.2
4,090,143	+		DZA65_RS18935	0.36	-0.0
4,090,143	+		DZA65_RS18935	0.36	+0.2
4,090,144	-		DZA65_RS18935	0.36	+0.1
4,090,144	-		DZA65_RS18935	0.36	+0.2
4,090,144	-		DZA65_RS18935	0.36	+0.7
4,090,144	-		DZA65_RS18935	0.36	-2.0
4,090,144	-		DZA65_RS18935	0.36	+1.5
4,090,144	-		DZA65_RS18935	0.36	+0.3
4,090,224	+		DZA65_RS18935	0.45	+0.7
4,090,224	+		DZA65_RS18935	0.45	-0.9
4,090,224	+		DZA65_RS18935	0.45	-0.0
4,090,224	+		DZA65_RS18935	0.45	-1.4
4,090,224	+		DZA65_RS18935	0.45	-1.3
4,090,224	+		DZA65_RS18935	0.45	-0.7
4,090,224	+		DZA65_RS18935	0.45	-1.1
4,090,224	+		DZA65_RS18935	0.45	+0.4
4,090,225	-		DZA65_RS18935	0.46	-0.7
4,090,225	-				+2.0
4,090,225	-		DZA65_RS18935	0.46	-0.0
4,090,225	-		DZA65_RS18935	0.46	-0.2
4,090,225	-		DZA65_RS18935	0.46	-0.0
4,090,225	-		DZA65_RS18935	0.46	+0.4
4,090,225	-		DZA65_RS18935	0.46	-2.4
4,090,225	-		DZA65_RS18935	0.46	+0.6
4,090,327	-		DZA65_RS18935	0.57	-1.4
4,090,327	-		DZA65_RS18935	0.57	-0.2
4,090,439	+		DZA65_RS18935	0.70	-1.7
4,090,439	+		DZA65_RS18935	0.70	+0.3
4,090,440	-		DZA65_RS18935	0.70	-1.6
4,090,440	-		DZA65_RS18935	0.70	-0.1
4,090,459	+		DZA65_RS18935	0.72	+1.4
4,090,459	+		DZA65_RS18935	0.72	-0.1
4,090,553	+		DZA65_RS18935	0.83	+1.7
4,090,553	+		DZA65_RS18935	0.83	+0.2
4,090,553	+		DZA65_RS18935	0.83	+0.6
4,090,554	-		DZA65_RS18935	0.83	-0.0
4,090,554	-		DZA65_RS18935	0.83	+1.6
4,090,563	+		DZA65_RS18935	0.84	+1.8
4,090,564	-		DZA65_RS18935	0.84	-2.5
4,090,685	+				-1.0
4,090,685	+				+1.0
4,090,685	+				-2.5
4,090,686	-				-0.5
4,090,686	-				-1.8
4,090,688	+				+0.6
4,090,688	+				-0.0
4,090,688	+				+0.7
4,090,689	-				+0.3
4,090,689	-				-0.6
4,090,716	+				-1.7
4,090,717	-				-0.2
4,090,723	-				+1.0