Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18825

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,058,501	+				+0.5
4,058,501	+				-1.7
4,058,501	+				-1.6
4,058,501	+				-0.1
4,058,501	+				-0.5
4,058,501	+				-0.9
4,058,501	+				-1.1
4,058,501	+				-1.4
4,058,501	+				-1.1
4,058,501	+				-0.4
4,058,501	+				-0.3
4,058,501	+				-1.8
4,058,501	+				+1.4
4,058,502	-				-1.4
4,058,502	-				-0.7
4,058,502	-				-0.6
4,058,502	-				-0.1
4,058,502	-				-1.2
4,058,502	-				-1.1
4,058,502	-				+0.6
4,058,502	-				-0.5
4,058,502	-				-0.6
4,058,541	+				-0.9
4,058,541	+				+1.4
4,058,604	-		DZA65_RS18820	0.12	+0.4
4,059,059	+		DZA65_RS18820	0.67	+0.9
4,059,059	+		DZA65_RS18820	0.67	-0.3
4,059,059	+		DZA65_RS18820	0.67	-0.1
4,059,060	-		DZA65_RS18820	0.67	-0.7
4,059,060	-		DZA65_RS18820	0.67	-1.2
4,059,060	-		DZA65_RS18820	0.67	-0.4
4,059,129	+		DZA65_RS18820	0.75	-0.1
4,059,129	+		DZA65_RS18820	0.75	-0.2
4,059,130	-		DZA65_RS18820	0.75	-2.2
4,059,130	-		DZA65_RS18820	0.75	+0.7
4,059,132	+		DZA65_RS18820	0.75	+0.0
4,059,132	+		DZA65_RS18820	0.75	-0.4
4,059,132	+		DZA65_RS18820	0.75	-1.6
4,059,133	-		DZA65_RS18820	0.75	+0.1
4,059,133	-		DZA65_RS18820	0.75	-0.2
4,059,133	-		DZA65_RS18820	0.75	+0.3
4,059,133	-		DZA65_RS18820	0.75	-0.2
4,059,133	-		DZA65_RS18820	0.75	-0.2
4,059,133	-		DZA65_RS18820	0.75	+0.1
4,059,133	-		DZA65_RS18820	0.75	+0.9
4,059,268	-				+4.7
4,059,297	+				-0.4
4,059,297	+				+0.0
4,059,297	+				+0.0
4,059,298	-				-0.2
4,059,298	-				-0.2
4,059,298	-				+0.3
4,059,298	-				-0.6
4,059,298	-				+1.5
4,059,298	-				-1.4
4,059,356	-				+1.5
4,059,458	+				+1.5
4,059,459	-				-0.2
4,059,459	-				-1.1
4,059,459	-				-1.2
4,059,459	-				+0.9
4,059,459	-				+1.2
4,059,459	-				-0.3
4,059,525	-				+2.5
4,059,551	+				-0.1
4,059,551	+				-1.4
4,059,647	+		DZA65_RS18825	0.12	+0.4
4,059,725	-		DZA65_RS18825	0.15	+0.7
4,059,815	+		DZA65_RS18825	0.19	-0.6
4,059,816	-		DZA65_RS18825	0.19	-0.5
4,059,816	-		DZA65_RS18825	0.19	+0.6
4,059,816	-		DZA65_RS18825	0.19	+0.5
4,059,911	+		DZA65_RS18825	0.22	+0.4
4,059,911	+		DZA65_RS18825	0.22	-1.0
4,059,911	+		DZA65_RS18825	0.22	-0.5
4,059,912	-		DZA65_RS18825	0.22	+0.7
4,059,912	-		DZA65_RS18825	0.22	+1.5
4,059,912	-		DZA65_RS18825	0.22	-0.6
4,059,916	+		DZA65_RS18825	0.23	-0.4
4,059,938	-		DZA65_RS18825	0.23	+0.9
4,059,958	+		DZA65_RS18825	0.24	+1.4
4,060,040	-		DZA65_RS18825	0.27	-1.2
4,060,160	+		DZA65_RS18825	0.32	+0.6
4,060,160	+		DZA65_RS18825	0.32	-0.1
4,060,160	+		DZA65_RS18825	0.32	-0.9
4,060,160	+		DZA65_RS18825	0.32	+0.9
4,060,161	-		DZA65_RS18825	0.32	+0.5
4,060,161	-		DZA65_RS18825	0.32	+0.1
4,060,161	-		DZA65_RS18825	0.32	-2.1
4,060,178	-		DZA65_RS18825	0.33	+0.2
4,060,569	+		DZA65_RS18825	0.48	-1.4
4,060,569	+		DZA65_RS18825	0.48	+0.9
4,060,570	-		DZA65_RS18825	0.48	+0.5
4,060,570	-		DZA65_RS18825	0.48	-0.6
4,060,682	+		DZA65_RS18825	0.52	-0.7
4,060,733	+		DZA65_RS18825	0.54	+0.5
4,060,734	-		DZA65_RS18825	0.54	-1.4
4,060,734	-		DZA65_RS18825	0.54	+1.9
4,060,817	+		DZA65_RS18825	0.58	-0.6
4,060,830	+		DZA65_RS18825	0.58	-0.9
4,060,832	+		DZA65_RS18825	0.58	-1.9
4,060,833	-		DZA65_RS18825	0.58	-0.1
4,060,916	+		DZA65_RS18825	0.62	-1.4
4,061,072	+		DZA65_RS18825	0.68	-0.9
4,061,072	+		DZA65_RS18825	0.68	-0.9
4,061,072	+		DZA65_RS18825	0.68	-2.0
4,061,072	+		DZA65_RS18825	0.68	+0.5
4,061,073	-		DZA65_RS18825	0.68	-1.1
4,061,074	+		DZA65_RS18825	0.68	-1.6
4,061,074	+		DZA65_RS18825	0.68	+0.3
4,061,321	+		DZA65_RS18825	0.77	+0.5
4,061,321	+		DZA65_RS18825	0.77	+0.4
4,061,412	+		DZA65_RS18825	0.81	-0.2
4,061,412	+		DZA65_RS18825	0.81	-1.4
4,061,412	+		DZA65_RS18825	0.81	+0.4
4,061,412	+		DZA65_RS18825	0.81	-0.5
4,061,412	+		DZA65_RS18825	0.81	+0.9
4,061,412	+		DZA65_RS18825	0.81	+0.9
4,061,412	+		DZA65_RS18825	0.81	-1.4
4,061,412	+		DZA65_RS18825	0.81	-1.4
4,061,413	-		DZA65_RS18825	0.81	+0.7
4,061,413	-		DZA65_RS18825	0.81	-0.9
4,061,413	-		DZA65_RS18825	0.81	-0.4
4,061,413	-		DZA65_RS18825	0.81	-0.3
4,061,413	-		DZA65_RS18825	0.81	-0.6
4,061,479	+		DZA65_RS18825	0.84	-0.3
4,061,480	-		DZA65_RS18825	0.84	-0.2
4,061,480	-		DZA65_RS18825	0.84	-0.1
4,061,480	-		DZA65_RS18825	0.84	-0.4
4,061,510	+		DZA65_RS18825	0.85	-0.1
4,061,510	+		DZA65_RS18825	0.85	-0.9
4,061,510	+		DZA65_RS18825	0.85	-2.1
4,061,510	+		DZA65_RS18825	0.85	-0.6
4,061,510	+		DZA65_RS18825	0.85	-0.1
4,061,510	+		DZA65_RS18825	0.85	+0.7
4,061,510	+		DZA65_RS18825	0.85	+0.1
4,061,510	+		DZA65_RS18825	0.85	+0.7
4,061,510	+				-0.1
4,061,511	-		DZA65_RS18825	0.85	-0.2
4,061,511	-		DZA65_RS18825	0.85	+0.2
4,061,511	-		DZA65_RS18825	0.85	+0.8
4,061,511	-		DZA65_RS18825	0.85	-0.9
4,061,511	-		DZA65_RS18825	0.85	+0.5
4,061,511	-		DZA65_RS18825	0.85	-1.4
4,061,511	-		DZA65_RS18825	0.85	+0.5
4,061,600	+		DZA65_RS18825	0.88	+0.6
4,061,691	-				+0.4
4,062,134	+				+1.3
4,062,135	-				-0.3
4,062,135	-				+0.9
4,062,228	+				+0.2
4,062,228	+				+0.9
4,062,229	-				+1.2
4,062,229	-				+0.6
4,062,229	-				-0.9
4,062,229	-				-0.5
4,062,229	-				-0.8
4,062,229	-				+0.4
4,062,237	+				+1.5
4,062,237	+				+0.7
4,062,237	+				-0.1
4,062,238	-				-0.9
4,062,260	+				-0.1
4,062,260	+				+0.2
4,062,260	+				-0.8
4,062,261	-				+0.5
4,062,326	+		DZA65_RS18830	0.11	+0.3
4,062,327	-		DZA65_RS18830	0.11	-0.2
4,062,327	-		DZA65_RS18830	0.11	-0.1
4,062,419	+		DZA65_RS18830	0.14	-1.1
4,062,497	+		DZA65_RS18830	0.16	-1.2
4,062,529	+		DZA65_RS18830	0.16	+0.2
4,062,628	-		DZA65_RS18830	0.19	+0.0
4,062,727	+		DZA65_RS18830	0.22	+0.1
4,062,728	-		DZA65_RS18830	0.22	+2.2