Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18250

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,935,323	-				+0.9
3,935,357	+		DZA65_RS18245	0.57	+0.2
3,935,511	+		DZA65_RS18245	0.69	+2.9
3,935,512	-		DZA65_RS18245	0.69	-2.4
3,935,658	+		DZA65_RS18245	0.80	+0.4
3,935,658	+		DZA65_RS18245	0.80	+1.3
3,935,659	-		DZA65_RS18245	0.80	-1.1
3,935,659	-		DZA65_RS18245	0.80	+1.9
3,935,659	-		DZA65_RS18245	0.80	-0.7
3,935,675	+		DZA65_RS18245	0.81	-0.9
3,935,675	+		DZA65_RS18245	0.81	+0.5
3,935,676	-		DZA65_RS18245	0.81	+0.7
3,935,705	+		DZA65_RS18245	0.84	+0.9
3,935,705	+		DZA65_RS18245	0.84	+0.1
3,935,719	-		DZA65_RS18245	0.85	-1.7
3,935,752	+		DZA65_RS18245	0.87	+0.1
3,935,753	-		DZA65_RS18245	0.87	+0.1
3,935,769	+		DZA65_RS18245	0.88	-1.5
3,935,769	+		DZA65_RS18245	0.88	-0.1
3,935,770	-		DZA65_RS18245	0.88	-0.1
3,935,787	+		DZA65_RS18245	0.90	-1.1
3,935,788	-		DZA65_RS18245	0.90	+0.9
3,935,790	+				-0.4
3,935,790	+				-0.6
3,935,790	+				+0.6
3,935,790	+				-0.5
3,935,791	-				-0.3
3,935,791	-				-0.1
3,935,794	+				-0.1
3,935,794	+				-0.7
3,935,794	+				-1.4
3,935,896	+				-1.1
3,935,896	+				-1.4
3,935,897	-				+0.5
3,935,904	-				-0.4
3,935,923	+				+0.9
3,935,924	-				-0.1
3,935,924	-				+1.5
3,935,924	-				-0.3
3,935,924	-				-1.7
3,935,924	-				-0.1
3,935,924	-				+1.0
3,935,931	+				-0.7
3,935,931	+				+0.2
3,935,931	+				+1.4
3,935,931	+				-2.0
3,935,931	+				+0.1
3,935,932	-				-0.4
3,935,932	-				-0.2
3,935,932	-				-0.4
3,935,932	-				-0.5
3,935,961	+				-0.9
3,935,962	-				-1.0
3,935,974	-				-0.9
3,936,037	+				+0.6
3,936,037	+				-1.2
3,936,037	+				+1.3
3,936,037	+				-0.1
3,936,038	-				+1.0
3,936,038	-				+0.4
3,936,073	+				-1.3
3,936,075	+				-0.0
3,936,075	+				+0.6
3,936,075	+				+0.2
3,936,075	+				+0.4
3,936,075	+				-0.7
3,936,076	-				+0.9
3,936,076	-				+0.6
3,936,076	-				+1.1
3,936,076	-				+0.5
3,936,076	-				+0.0
3,936,076	-				-0.1
3,936,076	-				+0.3
3,936,115	-				+0.2
3,936,128	+				-0.1
3,936,142	+				-1.1
3,936,142	+				-0.9
3,936,142	+				-2.1
3,936,142	+				-0.1
3,936,142	+				-0.7
3,936,142	+				-0.7
3,936,143	-				-2.0
3,936,143	-				-0.1
3,936,217	-				-1.4
3,936,310	+		DZA65_RS18250	0.13	+1.5
3,936,311	-		DZA65_RS18250	0.13	-1.5
3,936,311	-		DZA65_RS18250	0.13	-2.1
3,936,361	+		DZA65_RS18250	0.21	-0.1
3,936,362	-		DZA65_RS18250	0.21	+0.2
3,936,367	-		DZA65_RS18250	0.22	+0.4
3,936,552	+		DZA65_RS18250	0.52	+1.3
3,936,552	+		DZA65_RS18250	0.52	-0.1
3,936,552	+		DZA65_RS18250	0.52	+0.2
3,936,553	-		DZA65_RS18250	0.52	+0.1
3,936,553	-		DZA65_RS18250	0.52	-0.6
3,936,635	+		DZA65_RS18250	0.66	-0.1
3,936,635	+		DZA65_RS18250	0.66	-1.0
3,936,636	-		DZA65_RS18250	0.66	-0.7
3,936,695	+		DZA65_RS18250	0.75	-0.1
3,936,695	+		DZA65_RS18250	0.75	-0.6
3,936,695	+		DZA65_RS18250	0.75	+0.5
3,936,710	+		DZA65_RS18250	0.78	-1.7
3,936,710	+		DZA65_RS18250	0.78	-0.6
3,936,710	+		DZA65_RS18250	0.78	+0.5
3,936,710	+		DZA65_RS18250	0.78	+0.3
3,936,710	+		DZA65_RS18250	0.78	-0.9
3,936,710	+		DZA65_RS18250	0.78	-0.1
3,936,710	+		DZA65_RS18250	0.78	-0.7
3,936,711	-		DZA65_RS18250	0.78	-1.2
3,936,711	-		DZA65_RS18250	0.78	-1.1
3,936,711	-		DZA65_RS18250	0.78	-1.4
3,936,711	-		DZA65_RS18250	0.78	-0.8
3,936,711	-		DZA65_RS18250	0.78	+0.8
3,936,711	-		DZA65_RS18250	0.78	-0.9
3,936,711	-		DZA65_RS18250	0.78	-0.7
3,936,727	-		DZA65_RS18250	0.80	-0.9
3,936,727	-		DZA65_RS18250	0.80	+0.4
3,936,747	+		DZA65_RS18250	0.84	+0.7
3,936,747	+		DZA65_RS18250	0.84	+0.2
3,936,747	+		DZA65_RS18250	0.84	-1.0
3,936,747	+		DZA65_RS18250	0.84	+0.3
3,936,747	+		DZA65_RS18250	0.84	-2.1
3,936,748	-		DZA65_RS18250	0.84	+0.6
3,936,748	-		DZA65_RS18250	0.84	-1.7
3,936,748	-		DZA65_RS18250	0.84	-2.4
3,936,748	-		DZA65_RS18250	0.84	-0.1
3,936,748	-		DZA65_RS18250	0.84	-0.4
3,936,748	-		DZA65_RS18250	0.84	-2.3
3,936,752	-		DZA65_RS18250	0.85	+0.1
3,936,752	-		DZA65_RS18250	0.85	+0.7
3,936,844	+				-1.1
3,936,901	+				-0.1
3,936,902	-				-0.2
3,936,902	-				+0.9
3,936,902	-				-0.1
3,936,931	+				+0.3
3,936,931	+				-1.4
3,936,931	+				-0.2
3,936,931	+				+0.6
3,936,932	-				-0.7
3,936,942	-				+0.1
3,936,942	-				+1.1
3,936,952	-				-1.3
3,936,952	-				+1.7
3,936,961	+				-1.7
3,936,961	+				-0.1
3,936,962	-				-2.0
3,936,964	-				+2.5
3,936,972	+				+0.0
3,936,972	+				+0.1
3,936,972	+				-0.1
3,936,972	+				-0.4
3,936,973	-				-0.7
3,936,973	-				-0.1
3,936,973	-				-0.1
3,937,014	+				-0.1
3,937,014	+				+0.1
3,937,014	+				-1.1
3,937,015	-				-0.6
3,937,018	+				+1.5
3,937,018	+				+0.3
3,937,019	-				-2.8
3,937,019	-				-1.0
3,937,019	-				-0.1
3,937,019	-				-0.6
3,937,023	+				+1.5
3,937,024	-				+1.3
3,937,024	-				-1.1
3,937,024	-				+0.6
3,937,025	+				-1.1
3,937,026	-				-0.1
3,937,026	-				+0.7
3,937,026	-				+1.2
3,937,027	+				+0.3
3,937,027	+				-0.7
3,937,027	+				-1.4
3,937,027	+				-0.6
3,937,027	+				-2.3
3,937,027	+				-0.3
3,937,050	+				+0.3
3,937,050	+				+2.5
3,937,050	+				+0.3
3,937,072	+				+0.1
3,937,072	+				+0.4
3,937,072	+				+1.1
3,937,072	+				+0.9
3,937,072	+				+1.5
3,937,072	+				+0.0
3,937,073	-				-0.1
3,937,073	-				-0.8
3,937,098	+				-1.3
3,937,098	+				+0.6
3,937,098	+				+0.3
3,937,098	+				-0.5
3,937,098	+				+0.9