Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18010

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,874,186	+		DZA65_RS18000	0.58	-1.9
3,874,186	+		DZA65_RS18000	0.58	+1.3
3,874,186	+		DZA65_RS18000	0.58	-0.7
3,874,187	-		DZA65_RS18000	0.58	-0.1
3,874,322	+		DZA65_RS18000	0.75	-1.6
3,874,322	+		DZA65_RS18000	0.75	-0.7
3,874,323	-		DZA65_RS18000	0.75	-1.1
3,874,323	-		DZA65_RS18000	0.75	-1.6
3,874,323	-		DZA65_RS18000	0.75	-0.9
3,874,323	-		DZA65_RS18000	0.75	-0.7
3,874,323	-		DZA65_RS18000	0.75	-1.9
3,874,323	-		DZA65_RS18000	0.75	+0.5
3,874,323	-		DZA65_RS18000	0.75	+0.3
3,874,323	-		DZA65_RS18000	0.75	+1.2
3,874,388	+		DZA65_RS18000	0.83	+0.6
3,874,389	-		DZA65_RS18000	0.83	+0.1
3,874,393	+		DZA65_RS18000	0.84	-0.4
3,874,420	+		DZA65_RS18000	0.87	+0.2
3,874,420	+		DZA65_RS18000	0.87	-1.1
3,874,420	+		DZA65_RS18000	0.87	+2.1
3,874,420	+		DZA65_RS18000	0.87	-0.5
3,874,420	+		DZA65_RS18000	0.87	+0.3
3,874,420	+		DZA65_RS18000	0.87	-0.1
3,874,420	+		DZA65_RS18000	0.87	-0.2
3,874,420	+		DZA65_RS18000	0.87	+0.6
3,874,420	+		DZA65_RS18000	0.87	-0.5
3,874,421	-		DZA65_RS18000	0.87	-0.8
3,874,421	-		DZA65_RS18000	0.87	+0.2
3,874,457	+				-0.3
3,874,458	-				+0.1
3,874,494	+				+0.2
3,874,494	+				-0.2
3,874,495	-				+0.3
3,874,495	-				+1.2
3,874,498	+				-0.2
3,874,498	+				-0.3
3,874,499	-				+0.9
3,874,499	-				-0.5
3,874,499	-				+0.9
3,874,499	-				-0.5
3,874,499	-				-0.1
3,874,499	-				+0.0
3,874,524	-				-0.2
3,874,524	-				+1.0
3,874,524	-				+0.6
3,874,529	-				+1.2
3,874,531	+				+1.5
3,874,531	+				-1.0
3,874,531	+				-0.4
3,874,531	+				-0.1
3,874,531	+				-0.2
3,874,531	+				+0.4
3,874,531	+				+0.1
3,874,531	+				+0.7
3,874,532	-				-0.1
3,874,532	-				+1.3
3,874,532	-				-0.9
3,874,532	-				-1.5
3,874,532	-				+1.9
3,874,532	-				-1.0
3,874,535	+				-1.2
3,874,535	+				-0.1
3,874,583	+				+0.2
3,874,583	+				+1.2
3,874,583	+				-0.3
3,874,584	-				-1.1
3,874,590	+				+1.7
3,874,590	+				-0.1
3,874,590	+				-1.1
3,874,590	+				+0.5
3,874,591	-				+0.9
3,874,591	-				-1.0
3,874,592	+				-0.9
3,874,592	+				-1.4
3,874,593	-				+0.5
3,874,607	+				-0.4
3,874,650	+				+0.7
3,874,650	+				-0.3
3,874,651	-				-0.4
3,874,651	-				+0.9
3,874,651	-				+1.8
3,874,651	-				+1.2
3,874,651	-				+0.3
3,874,797	-		DZA65_RS18005	0.38	-0.1
3,874,797	-		DZA65_RS18005	0.38	+0.6
3,874,798	+		DZA65_RS18005	0.39	-0.1
3,874,798	+		DZA65_RS18005	0.39	+2.5
3,874,798	+		DZA65_RS18005	0.39	-0.7
3,874,798	+		DZA65_RS18005	0.39	+1.6
3,874,798	+		DZA65_RS18005	0.39	+0.9
3,874,798	+		DZA65_RS18005	0.39	-0.6
3,874,798	+		DZA65_RS18005	0.39	-0.5
3,874,799	-		DZA65_RS18005	0.39	+1.6
3,874,799	-		DZA65_RS18005	0.39	+0.3
3,874,838	-		DZA65_RS18005	0.49	+0.6
3,874,975	-		DZA65_RS18005	0.82	+1.5
3,874,975	-		DZA65_RS18005	0.82	+1.4
3,874,981	+		DZA65_RS18005	0.84	+1.4
3,875,089	+				-1.4
3,875,089	+				+0.9
3,875,089	+				-1.6
3,875,089	+				+0.9
3,875,089	+				-0.7
3,875,089	+				+0.9
3,875,090	-				-1.1
3,875,090	-				+2.2
3,875,090	-				+0.2
3,875,090	-				+0.9
3,875,091	+				+0.1
3,875,092	-				+0.3
3,875,092	-				-0.3
3,875,092	-				-0.3
3,875,150	+		DZA65_RS18010	0.15	-1.4
3,875,150	+		DZA65_RS18010	0.15	+0.1
3,875,150	+		DZA65_RS18010	0.15	+0.4
3,875,150	+		DZA65_RS18010	0.15	-0.6
3,875,150	+		DZA65_RS18010	0.15	+0.9
3,875,150	+		DZA65_RS18010	0.15	+0.3
3,875,150	+		DZA65_RS18010	0.15	+0.2
3,875,150	+		DZA65_RS18010	0.15	+0.5
3,875,150	+		DZA65_RS18010	0.15	+0.3
3,875,150	+		DZA65_RS18010	0.15	+0.5
3,875,150	+		DZA65_RS18010	0.15	+0.3
3,875,150	+		DZA65_RS18010	0.15	-0.4
3,875,150	+		DZA65_RS18010	0.15	-0.7
3,875,150	+		DZA65_RS18010	0.15	-0.0
3,875,150	+		DZA65_RS18010	0.15	+0.4
3,875,150	+		DZA65_RS18010	0.15	+2.5
3,875,150	+		DZA65_RS18010	0.15	+1.9
3,875,150	+		DZA65_RS18010	0.15	+0.3
3,875,150	+		DZA65_RS18010	0.15	+0.1
3,875,150	+		DZA65_RS18010	0.15	+0.6
3,875,151	-		DZA65_RS18010	0.15	-1.0
3,875,151	-		DZA65_RS18010	0.15	-1.1
3,875,151	-		DZA65_RS18010	0.15	+1.4
3,875,151	-		DZA65_RS18010	0.15	+4.5
3,875,151	-				-0.1
3,875,151	-				+0.9
3,875,167	+		DZA65_RS18010	0.17	-0.4
3,875,167	+		DZA65_RS18010	0.17	+0.3
3,875,167	+		DZA65_RS18010	0.17	+0.6
3,875,167	+		DZA65_RS18010	0.17	-1.8
3,875,167	+		DZA65_RS18010	0.17	-0.2
3,875,167	+		DZA65_RS18010	0.17	+1.2
3,875,167	+		DZA65_RS18010	0.17	-2.1
3,875,167	+		DZA65_RS18010	0.17	+0.1
3,875,168	-		DZA65_RS18010	0.18	+0.9
3,875,168	-		DZA65_RS18010	0.18	+1.3
3,875,168	-		DZA65_RS18010	0.18	+0.1
3,875,168	-		DZA65_RS18010	0.18	+2.1
3,875,168	-		DZA65_RS18010	0.18	+0.5
3,875,169	+		DZA65_RS18010	0.18	+1.1
3,875,169	+		DZA65_RS18010	0.18	-0.4
3,875,169	+		DZA65_RS18010	0.18	-1.9
3,875,170	-		DZA65_RS18010	0.18	-2.2
3,875,170	-		DZA65_RS18010	0.18	-0.3
3,875,170	-		DZA65_RS18010	0.18	+0.3
3,875,170	-		DZA65_RS18010	0.18	-2.7
3,875,334	+		DZA65_RS18010	0.41	-0.4
3,875,346	+		DZA65_RS18010	0.43	-0.4
3,875,347	-		DZA65_RS18010	0.43	+0.4
3,875,373	-		DZA65_RS18010	0.46	+0.9
3,875,396	+		DZA65_RS18010	0.50	-1.7
3,875,396	+		DZA65_RS18010	0.50	-1.4
3,875,397	-		DZA65_RS18010	0.50	-1.6
3,875,455	+		DZA65_RS18010	0.58	-0.4
3,875,456	-		DZA65_RS18010	0.58	-1.0
3,875,523	+		DZA65_RS18010	0.68	+0.9
3,875,524	-		DZA65_RS18010	0.68	-0.7
3,875,591	+		DZA65_RS18010	0.77	+0.4
3,875,591	+		DZA65_RS18010	0.77	+0.5
3,875,592	-		DZA65_RS18010	0.77	+1.4
3,875,592	-		DZA65_RS18010	0.77	-1.1
3,875,592	-		DZA65_RS18010	0.77	-0.1
3,875,605	-		DZA65_RS18010	0.79	+0.3
3,875,668	+		DZA65_RS18010	0.88	-1.7
3,875,669	-		DZA65_RS18010	0.88	+0.2
3,875,669	-		DZA65_RS18010	0.88	+0.0
3,875,691	+				-0.7
3,875,711	+				+0.4
3,875,730	+				+0.9
3,875,730	+				+0.0
3,875,731	-				-0.7
3,875,749	+				+0.1
3,875,758	+				+0.5
3,875,796	+				-0.5
3,875,796	+				+0.2
3,875,796	+				+1.6
3,875,796	+				+2.0
3,875,796	+				-0.7
3,875,836	+				-0.5
3,875,836	+				-1.1
3,875,836	+				+0.1
3,875,836	+				-0.1
3,875,836	+				+0.3
3,875,840	+				-0.1
3,875,840	+				+1.9
3,875,840	+				-0.3
3,875,840	+				-0.0
3,875,840	+				-0.7
3,875,840	+				+1.5