Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17745

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,818,806	-				+1.2
3,818,825	-				+1.0
3,818,894	+				+0.6
3,818,928	+				+0.6
3,818,929	-				-1.2
3,818,929	-				+0.0
3,818,937	+				-2.1
3,818,937	+				-0.7
3,818,937	+				-1.1
3,818,937	+				-0.1
3,818,938	-				+4.1
3,818,938	-				+0.4
3,818,938	-				+0.3
3,818,945	+				-1.6
3,818,945	+				-1.1
3,818,945	+				+1.9
3,818,945	+				-0.1
3,818,945	+				-1.0
3,818,974	+				+2.6
3,818,993	+				+0.7
3,818,998	+				-0.2
3,818,998	+				-1.1
3,818,998	+				-0.0
3,818,999	-				-0.4
3,818,999	-				+0.1
3,819,057	-				+1.7
3,819,063	+				-2.6
3,819,064	-				+0.1
3,819,064	-				+0.3
3,819,068	+				+2.2
3,819,068	+				+0.5
3,819,068	+				+1.3
3,819,068	+				+0.1
3,819,069	-				-1.3
3,819,098	+				+0.1
3,819,098	+				-0.0
3,819,098	+				-0.1
3,819,098	+				-1.4
3,819,099	-				-0.5
3,819,099	-				+0.1
3,819,099	-				+1.9
3,819,099	-				+0.9
3,819,099	-				-0.7
3,819,099	-				+0.8
3,819,099	-				+0.9
3,819,099	-				-0.3
3,819,099	-				-1.1
3,819,161	+				-0.1
3,819,162	-				+1.3
3,819,162	-				-0.1
3,819,224	+		DZA65_RS17740	0.18	-0.1
3,819,224	+		DZA65_RS17740	0.18	-0.4
3,819,224	+		DZA65_RS17740	0.18	-0.3
3,819,224	+		DZA65_RS17740	0.18	+0.9
3,819,225	-		DZA65_RS17740	0.18	+0.1
3,819,225	-		DZA65_RS17740	0.18	-0.7
3,819,225	-		DZA65_RS17740	0.18	-1.0
3,819,225	-		DZA65_RS17740	0.18	-0.7
3,819,226	+		DZA65_RS17740	0.18	+0.0
3,819,226	+		DZA65_RS17740	0.18	-0.1
3,819,227	-		DZA65_RS17740	0.18	+0.3
3,819,264	-		DZA65_RS17740	0.23	+0.0
3,819,284	+		DZA65_RS17740	0.26	+0.2
3,819,284	+		DZA65_RS17740	0.26	+0.7
3,819,284	+		DZA65_RS17740	0.26	+1.1
3,819,284	+		DZA65_RS17740	0.26	+0.5
3,819,285	-		DZA65_RS17740	0.26	-1.2
3,819,285	-		DZA65_RS17740	0.26	-1.1
3,819,285	-		DZA65_RS17740	0.26	+0.3
3,819,317	+		DZA65_RS17740	0.31	+1.3
3,819,318	-		DZA65_RS17740	0.31	+1.3
3,819,358	+		DZA65_RS17740	0.36	-0.1
3,819,359	-		DZA65_RS17740	0.36	-0.1
3,819,378	-		DZA65_RS17740	0.39	+0.9
3,819,378	-		DZA65_RS17740	0.39	-0.7
3,819,416	+		DZA65_RS17740	0.44	+0.7
3,819,416	+		DZA65_RS17740	0.44	+0.5
3,819,417	-		DZA65_RS17740	0.44	-0.4
3,819,417	-		DZA65_RS17740	0.44	-0.3
3,819,420	-		DZA65_RS17740	0.45	+1.5
3,819,431	-		DZA65_RS17740	0.46	-0.5
3,819,452	+				+0.6
3,819,452	+		DZA65_RS17740	0.49	+1.0
3,819,452	+		DZA65_RS17740	0.49	-0.6
3,819,453	-		DZA65_RS17740	0.49	+0.9
3,819,453	-		DZA65_RS17740	0.49	+0.1
3,819,453	-		DZA65_RS17740	0.49	-0.5
3,819,453	-		DZA65_RS17740	0.49	+0.5
3,819,511	+		DZA65_RS17740	0.57	+0.2
3,819,521	+		DZA65_RS17740	0.59	+0.6
3,819,521	+		DZA65_RS17740	0.59	+0.9
3,819,522	-		DZA65_RS17740	0.59	-1.7
3,819,522	-		DZA65_RS17740	0.59	-0.1
3,819,539	+		DZA65_RS17740	0.61	+0.1
3,819,539	+		DZA65_RS17740	0.61	+0.1
3,819,539	+		DZA65_RS17740	0.61	+1.7
3,819,539	+		DZA65_RS17740	0.61	-1.4
3,819,539	+		DZA65_RS17740	0.61	-0.7
3,819,539	+		DZA65_RS17740	0.61	-1.0
3,819,539	+		DZA65_RS17740	0.61	-1.1
3,819,539	+		DZA65_RS17740	0.61	+0.6
3,819,540	-		DZA65_RS17740	0.61	+0.0
3,819,540	-		DZA65_RS17740	0.61	+1.4
3,819,540	-		DZA65_RS17740	0.61	+0.7
3,819,540	-		DZA65_RS17740	0.61	-0.1
3,819,541	+		DZA65_RS17740	0.61	+0.2
3,819,554	+		DZA65_RS17740	0.63	+0.3
3,819,554	+		DZA65_RS17740	0.63	+0.1
3,819,555	-		DZA65_RS17740	0.63	+0.5
3,819,555	-		DZA65_RS17740	0.63	-0.6
3,819,560	+		DZA65_RS17740	0.64	+0.3
3,819,560	+		DZA65_RS17740	0.64	-0.7
3,819,560	+		DZA65_RS17740	0.64	-0.1
3,819,561	-		DZA65_RS17740	0.64	+0.9
3,819,561	-		DZA65_RS17740	0.64	-1.1
3,819,561	-		DZA65_RS17740	0.64	-0.5
3,819,561	-		DZA65_RS17740	0.64	-0.7
3,819,561	-		DZA65_RS17740	0.64	-0.1
3,819,561	-		DZA65_RS17740	0.64	+0.5
3,819,662	+		DZA65_RS17740	0.78	-1.4
3,819,662	+		DZA65_RS17740	0.78	-1.2
3,819,662	+		DZA65_RS17740	0.78	-0.1
3,819,663	-		DZA65_RS17740	0.78	+0.7
3,819,663	-		DZA65_RS17740	0.78	-0.6
3,819,663	-		DZA65_RS17740	0.78	+3.1
3,819,663	-		DZA65_RS17740	0.78	+0.1
3,819,663	-		DZA65_RS17740	0.78	-0.1
3,819,665	+		DZA65_RS17740	0.79	-0.5
3,819,701	+		DZA65_RS17740	0.83	+0.7
3,819,701	+		DZA65_RS17740	0.83	-1.7
3,819,701	+		DZA65_RS17740	0.83	+1.3
3,819,702	-		DZA65_RS17740	0.84	+0.2
3,819,702	-		DZA65_RS17740	0.84	+0.6
3,819,702	-		DZA65_RS17740	0.84	+0.3
3,819,752	+				-2.1
3,819,752	+				-0.3
3,819,752	+				-1.8
3,819,752	+				+1.4
3,819,753	-				-0.2
3,819,753	-				+0.2
3,819,753	-				+0.3
3,819,753	-				+0.3
3,819,753	-				-0.2
3,819,753	-				-0.4
3,819,753	-				+0.9
3,819,761	-				-0.0
3,819,819	-				-0.3
3,819,819	-				+0.9
3,819,819	-				+0.6
3,819,819	-				-0.1
3,820,061	+		DZA65_RS17745	0.35	+0.1
3,820,062	-		DZA65_RS17745	0.35	+0.9
3,820,062	-		DZA65_RS17745	0.35	-0.1
3,820,086	+		DZA65_RS17745	0.38	-0.9
3,820,086	+		DZA65_RS17745	0.38	-1.9
3,820,086	+		DZA65_RS17745	0.38	-0.1
3,820,087	-		DZA65_RS17745	0.39	-0.3
3,820,087	-		DZA65_RS17745	0.39	-0.3
3,820,087	-		DZA65_RS17745	0.39	-0.6
3,820,087	-		DZA65_RS17745	0.39	+0.9
3,820,087	-		DZA65_RS17745	0.39	-1.1
3,820,266	-		DZA65_RS17745	0.62	-1.9
3,820,266	-		DZA65_RS17745	0.62	+0.1
3,820,276	+		DZA65_RS17745	0.63	-0.1
3,820,359	+		DZA65_RS17745	0.74	-2.3
3,820,359	+		DZA65_RS17745	0.74	-0.9
3,820,359	+		DZA65_RS17745	0.74	-1.9
3,820,359	+		DZA65_RS17745	0.74	+0.8
3,820,359	+		DZA65_RS17745	0.74	-0.7
3,820,360	-		DZA65_RS17745	0.74	+2.3
3,820,360	-		DZA65_RS17745	0.74	-0.5
3,820,360	-		DZA65_RS17745	0.74	+0.6
3,820,417	+		DZA65_RS17745	0.82	-1.0
3,820,417	+		DZA65_RS17745	0.82	-0.8
3,820,418	-		DZA65_RS17745	0.82	+2.8
3,820,437	+		DZA65_RS17745	0.84	-0.1
3,820,437	+		DZA65_RS17745	0.84	-0.3
3,820,437	+		DZA65_RS17745	0.84	+0.1
3,820,438	-		DZA65_RS17745	0.84	-0.6
3,820,438	-		DZA65_RS17745	0.84	-0.9
3,820,438	-		DZA65_RS17745	0.84	-0.1
3,820,438	-		DZA65_RS17745	0.84	-0.3
3,820,438	-		DZA65_RS17745	0.84	+0.5
3,820,438	-		DZA65_RS17745	0.84	-0.4
3,820,444	+		DZA65_RS17745	0.85	+0.3
3,820,444	+		DZA65_RS17745	0.85	-0.5
3,820,444	+				+1.5
3,820,444	+		DZA65_RS17745	0.85	+1.2
3,820,444	+		DZA65_RS17745	0.85	-0.6
3,820,444	+		DZA65_RS17745	0.85	-1.6
3,820,444	+		DZA65_RS17745	0.85	+3.0
3,820,444	+		DZA65_RS17745	0.85	+0.5
3,820,444	+		DZA65_RS17745	0.85	-1.5
3,820,445	-		DZA65_RS17745	0.85	-1.0
3,820,445	-		DZA65_RS17745	0.85	-0.7
3,820,445	-		DZA65_RS17745	0.85	-0.9
3,820,445	-		DZA65_RS17745	0.85	-0.3
3,820,502	-				+1.9
3,820,516	+				-0.1
3,820,571	-				+0.6
3,820,574	+				-0.7
3,820,574	+				-0.9
3,820,574	+				+0.5
3,820,574	+				+1.0
3,820,575	-				-0.9
3,820,575	-				-0.5
3,820,593	+				-2.6
3,820,593	+				-0.7
3,820,594	-				+0.3
3,820,594	-				+0.9
3,820,594	-				-0.4
3,821,230	-				-0.2
3,821,230	-				-0.7
3,821,230	-				-0.4
3,821,230	-				+0.3
3,821,233	+				+0.3
3,821,234	-				+0.2
3,821,234	-				-0.1
3,821,234	-				+0.9
3,821,234	-				+0.1
3,821,234	-				-0.3
3,821,234	-				-1.3
3,821,234	-				+0.0
3,821,239	-				-2.3
3,821,239	-				+0.9
3,821,239	-				-1.6
3,821,239	-				-1.7
3,821,239	-				-0.1
3,821,239	-				-0.3
3,821,239	-				+0.6
3,821,239	-				-1.9
3,821,307	+				+1.3
3,821,308	-				+0.3
3,821,308	-				-0.1
3,821,308	-				+0.9
3,821,308	-				+0.3
3,821,308	-				+0.2
3,821,308	-				+0.9
3,821,308	-				-1.1
3,821,425	+				+0.4
3,821,425	+				+0.5
3,821,426	-				+1.1
3,821,478	+				-0.5
3,821,478	+				-0.7
3,821,478	+				+1.7
3,821,479	-				+1.4
3,821,479	-				-0.4
3,821,479	-				+0.9
3,821,479	-				-0.1
3,821,479	-				-0.5
3,821,481	-				-1.3
3,821,506	-				-0.9
3,821,506	-				-1.1
3,821,506	-				+0.5
3,821,514	+				-0.4
3,821,515	-				+1.3
3,821,515	-				-0.7
3,821,516	+				+0.4
3,821,516	+				-1.0
3,821,516	+				+1.9
3,821,517	-				-0.4
3,821,530	+				-0.4
3,821,530	+				-0.3
3,821,530	+				-0.9
3,821,530	+				+1.0
3,821,530	+				-0.1
3,821,530	+				-1.1
3,821,531	-				-1.4
3,821,531	-				+1.3
3,821,536	+				-0.3
3,821,536	+				+0.3
3,821,536	+				-0.2
3,821,536	+				-1.6
3,821,537	-				+0.4
3,821,537	-				-1.3
3,821,537	-				+1.0
3,821,537	-				+0.9
3,821,537	-				+1.9
3,821,537	-				-0.0
3,821,537	-				+0.1