Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17730

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,815,196	-		DZA65_RS17720	0.32	+0.5
3,815,196	-		DZA65_RS17720	0.32	-1.1
3,815,196	-		DZA65_RS17720	0.32	-0.7
3,815,230	-		DZA65_RS17720	0.40	-0.1
3,815,245	+		DZA65_RS17720	0.43	-1.1
3,815,245	+		DZA65_RS17720	0.43	-1.0
3,815,245	+		DZA65_RS17720	0.43	+1.1
3,815,245	+		DZA65_RS17720	0.43	-1.0
3,815,245	+		DZA65_RS17720	0.43	-0.1
3,815,245	+		DZA65_RS17720	0.43	-0.3
3,815,245	+		DZA65_RS17720	0.43	+0.1
3,815,246	-		DZA65_RS17720	0.43	+0.6
3,815,246	-		DZA65_RS17720	0.43	-3.1
3,815,246	-		DZA65_RS17720	0.43	+1.2
3,815,246	-		DZA65_RS17720	0.43	+0.5
3,815,246	-		DZA65_RS17720	0.43	-1.1
3,815,246	-		DZA65_RS17720	0.43	+1.0
3,815,246	-		DZA65_RS17720	0.43	+0.3
3,815,246	-		DZA65_RS17720	0.43	+2.2
3,815,246	-		DZA65_RS17720	0.43	+0.9
3,815,255	+		DZA65_RS17720	0.45	+0.1
3,815,255	+		DZA65_RS17720	0.45	-1.1
3,815,255	+		DZA65_RS17720	0.45	+0.3
3,815,255	+		DZA65_RS17720	0.45	+0.3
3,815,255	+		DZA65_RS17720	0.45	-0.9
3,815,256	-		DZA65_RS17720	0.46	+0.6
3,815,256	-		DZA65_RS17720	0.46	-0.3
3,815,256	-				+1.9
3,815,318	+		DZA65_RS17720	0.59	+0.9
3,815,319	-		DZA65_RS17720	0.59	-0.7
3,815,328	+		DZA65_RS17720	0.61	+0.4
3,815,328	+		DZA65_RS17720	0.61	+1.5
3,815,328	+		DZA65_RS17720	0.61	-1.1
3,815,328	+		DZA65_RS17720	0.61	+0.3
3,815,328	+		DZA65_RS17720	0.61	+0.1
3,815,328	+		DZA65_RS17720	0.61	-0.1
3,815,328	+		DZA65_RS17720	0.61	-1.3
3,815,328	+		DZA65_RS17720	0.61	-1.8
3,815,328	+		DZA65_RS17720	0.61	-1.9
3,815,328	+		DZA65_RS17720	0.61	+0.4
3,815,328	+		DZA65_RS17720	0.61	-1.2
3,815,328	+		DZA65_RS17720	0.61	-1.3
3,815,329	-		DZA65_RS17720	0.61	-0.1
3,815,329	-		DZA65_RS17720	0.61	-0.8
3,815,329	-		DZA65_RS17720	0.61	+0.4
3,815,329	-		DZA65_RS17720	0.61	+0.1
3,815,329	-		DZA65_RS17720	0.61	-0.3
3,815,329	-		DZA65_RS17720	0.61	-1.1
3,815,329	-		DZA65_RS17720	0.61	+0.1
3,815,329	-		DZA65_RS17720	0.61	+0.2
3,815,329	-		DZA65_RS17720	0.61	+0.9
3,815,329	-		DZA65_RS17720	0.61	+2.5
3,815,329	-		DZA65_RS17720	0.61	+3.3
3,815,329	-		DZA65_RS17720	0.61	-1.4
3,815,329	-		DZA65_RS17720	0.61	-1.9
3,815,332	+		DZA65_RS17720	0.62	-0.6
3,815,332	+		DZA65_RS17720	0.62	+0.5
3,815,332	+		DZA65_RS17720	0.62	+0.0
3,815,332	+		DZA65_RS17720	0.62	+0.2
3,815,332	+		DZA65_RS17720	0.62	-0.2
3,815,332	+		DZA65_RS17720	0.62	+0.6
3,815,332	+		DZA65_RS17720	0.62	+0.9
3,815,332	+		DZA65_RS17720	0.62	+0.1
3,815,332	+		DZA65_RS17720	0.62	-0.3
3,815,332	+		DZA65_RS17720	0.62	-0.6
3,815,332	+		DZA65_RS17720	0.62	+1.0
3,815,332	+		DZA65_RS17720	0.62	-0.9
3,815,332	+		DZA65_RS17720	0.62	+0.3
3,815,332	+		DZA65_RS17720	0.62	-0.3
3,815,332	+		DZA65_RS17720	0.62	+0.7
3,815,332	+		DZA65_RS17720	0.62	-0.4
3,815,332	+		DZA65_RS17720	0.62	+1.9
3,815,332	+		DZA65_RS17720	0.62	-0.9
3,815,333	-		DZA65_RS17720	0.62	+0.4
3,815,333	-		DZA65_RS17720	0.62	-1.8
3,815,333	-		DZA65_RS17720	0.62	-0.1
3,815,333	-		DZA65_RS17720	0.62	-0.5
3,815,333	-		DZA65_RS17720	0.62	+0.1
3,815,333	-		DZA65_RS17720	0.62	+0.1
3,815,333	-		DZA65_RS17720	0.62	+0.3
3,815,333	-		DZA65_RS17720	0.62	-0.5
3,815,333	-		DZA65_RS17720	0.62	-0.4
3,815,333	-		DZA65_RS17720	0.62	-0.4
3,815,334	-				-0.7
3,815,341	+		DZA65_RS17720	0.64	-0.0
3,815,341	+		DZA65_RS17720	0.64	+0.9
3,815,341	+		DZA65_RS17720	0.64	-0.9
3,815,341	+		DZA65_RS17720	0.64	-0.9
3,815,341	+		DZA65_RS17720	0.64	+0.5
3,815,342	-		DZA65_RS17720	0.64	-1.1
3,815,342	-		DZA65_RS17720	0.64	-0.3
3,815,342	-		DZA65_RS17720	0.64	+0.3
3,815,342	-		DZA65_RS17720	0.64	+0.5
3,815,342	-		DZA65_RS17720	0.64	-0.8
3,815,342	-		DZA65_RS17720	0.64	-0.5
3,815,342	-		DZA65_RS17720	0.64	-0.1
3,815,342	-		DZA65_RS17720	0.64	-1.2
3,815,342	-		DZA65_RS17720	0.64	+1.1
3,815,342	-		DZA65_RS17720	0.64	-1.6
3,815,342	-		DZA65_RS17720	0.64	-0.9
3,815,342	-		DZA65_RS17720	0.64	-0.6
3,815,342	-		DZA65_RS17720	0.64	+0.9
3,815,346	+		DZA65_RS17720	0.65	+0.3
3,815,475	+				+0.2
3,815,475	+				+0.1
3,815,475	+				+0.0
3,815,475	+				+1.2
3,815,475	+				-0.9
3,815,475	+				+1.1
3,815,476	-				-0.6
3,815,476	-				+0.7
3,815,476	-				+0.4
3,815,476	-				+0.4
3,815,476	-				+0.3
3,815,476	-				-0.8
3,815,476	-				+0.1
3,815,476	-				-0.1
3,815,476	-				+0.2
3,815,492	+				-1.4
3,815,493	-				+0.7
3,815,505	+				-0.1
3,815,505	+				-0.5
3,815,506	-				-0.5
3,815,506	-				-1.2
3,815,506	-				-0.3
3,815,512	+				-0.3
3,815,513	-				-0.1
3,815,538	+				-0.4
3,815,539	-				+0.9
3,815,539	-				-0.1
3,815,562	-				+0.4
3,815,577	+				+0.7
3,815,578	-				-0.3
3,815,579	+				-1.4
3,815,579	+				-0.5
3,815,579	+				-0.4
3,815,579	+				+2.3
3,815,579	+				+1.1
3,815,579	+				-0.7
3,815,579	+				+1.1
3,815,579	+				+0.5
3,815,579	+				-1.1
3,815,579	+				-1.2
3,815,579	+				-1.9
3,815,579	+				-0.7
3,815,579	+				-0.4
3,815,580	-				+0.3
3,815,580	-				+0.2
3,815,580	-				+1.9
3,815,580	-				-1.0
3,815,580	-				-0.1
3,815,580	-				+0.2
3,815,580	-				+3.2
3,815,580	-				-1.5
3,815,580	-				+0.1
3,815,580	-				-0.5
3,815,580	-				-0.6
3,815,580	-				-0.1
3,815,580	-				+0.4
3,815,583	+				+1.2
3,815,583	+				-0.8
3,815,583	+				+0.7
3,815,584	-				-0.1
3,815,584	-				-0.3
3,815,584	-				+0.1
3,815,584	-				-0.5
3,815,584	-				+0.1
3,815,584	-				-1.0
3,815,584	-				-0.0
3,815,605	+				-1.9
3,815,605	+				-0.0
3,815,605	+				+0.1
3,815,606	-				-1.8
3,815,609	+				+0.0
3,815,609	+				-0.6
3,815,609	+				+0.4
3,815,609	+				+1.6
3,815,609	+				+0.6
3,815,610	-				-0.0
3,815,610	-				-1.9
3,815,610	-				-0.7
3,815,615	+				-1.8
3,815,615	+				+0.6
3,815,615	+				-0.2
3,815,616	-				+0.7
3,815,616	-				-0.3
3,815,616	-				-1.2
3,815,616	-				+0.7
3,815,616	-				-0.1
3,815,616	-				+0.3
3,815,616	-				-0.6
3,815,616	-				+0.5
3,815,664	-				-0.1
3,815,675	+				+0.3
3,815,676	-				+0.1
3,815,691	+				-1.4
3,815,811	+		DZA65_RS17725	0.36	-0.1
3,815,812	-		DZA65_RS17725	0.37	-1.4
3,815,812	-		DZA65_RS17725	0.37	-0.3
3,815,812	-		DZA65_RS17725	0.37	-0.5
3,815,850	+		DZA65_RS17725	0.56	+0.7
3,815,850	+		DZA65_RS17725	0.56	+1.2
3,815,850	+		DZA65_RS17725	0.56	-1.7
3,815,851	-		DZA65_RS17725	0.56	-2.0
3,815,851	-		DZA65_RS17725	0.56	+0.4
3,815,851	-		DZA65_RS17725	0.56	-0.9
3,815,851	-		DZA65_RS17725	0.56	-0.6
3,815,851	-		DZA65_RS17725	0.56	+0.1
3,815,853	+		DZA65_RS17725	0.57	+0.9
3,815,853	+		DZA65_RS17725	0.57	+0.9
3,815,854	-		DZA65_RS17725	0.58	-1.0
3,815,854	-		DZA65_RS17725	0.58	-0.7
3,815,854	-		DZA65_RS17725	0.58	+0.6
3,815,854	-		DZA65_RS17725	0.58	-2.4
3,815,931	-				-0.1
3,815,931	-				-0.9
3,815,931	-				-1.5
3,815,936	+				+2.3
3,815,936	+				-0.7
3,815,936	+				+0.9
3,815,936	+				+0.1
3,815,937	-				+0.1
3,815,937	-				+0.6
3,815,937	-				-0.3
3,815,937	-				+0.5
3,815,944	+				+0.7
3,815,944	+				+0.1
3,815,945	-				-1.7
3,816,012	+				+0.7
3,816,030	-				-3.2
3,816,030	-				+0.6
3,816,042	+				-0.5
3,816,043	-				-0.4
3,816,048	+				+1.5
3,816,048	+				+0.0
3,816,049	-				+0.9
3,816,049	-				+1.5
3,816,049	-				+0.9
3,816,049	-				-0.1
3,816,049	-				+0.9
3,816,049	-				+1.3
3,816,056	-				+0.5
3,816,092	+				-0.2
3,816,092	+				-0.7
3,816,092	+				+0.4
3,816,093	-				+2.9
3,816,093	-				+0.1
3,816,093	-				+0.5
3,816,103	-				+0.2
3,816,177	+				+0.1
3,816,177	+				-0.3
3,816,177	+				+0.6
3,816,177	+				+0.0
3,816,177	+				-1.0
3,816,177	+				-1.1
3,816,177	+				+1.1
3,816,178	-				+1.2
3,816,178	-				+0.9
3,816,178	-				+1.9
3,816,178	-				+2.1
3,816,178	-				-0.4
3,816,190	+				+0.4
3,816,191	-				+1.3
3,816,191	-				+0.5
3,816,191	-				+0.3
3,816,191	-				-0.7
3,816,194	+				-0.7
3,816,194	+				-0.8
3,816,194	+				-0.1
3,816,194	+				+0.4
3,816,194	+				-0.3
3,816,195	-				-0.7
3,816,195	-				-0.7
3,816,195	-				-1.1
3,816,195	-				-0.5
3,816,195	-				-1.1
3,816,195	-				-0.1
3,816,195	-				-1.4
3,816,195	-				+0.6
3,816,195	-				-1.2
3,816,237	+				-1.7
3,816,238	-				-1.0
3,816,238	-				+0.9
3,816,258	+				+0.2
3,816,258	+				-1.9
3,816,258	+				+1.9
3,816,258	+				-1.1
3,816,259	-				-0.9
3,816,259	-				-0.3
3,816,259	-				+0.5
3,816,259	-				-0.8
3,816,274	+				+0.7
3,816,274	+				-1.1
3,816,274	+				-0.2
3,816,274	+				+0.9
3,816,274	+				+0.0
3,816,275	-				+1.9
3,816,298	+				-0.4
3,816,299	-				+0.1
3,816,299	-				-1.2
3,816,299	-				-0.7
3,816,299	-				-0.7
3,816,299	-				+0.6
3,816,299	-				-0.4
3,816,299	-				+0.1
3,816,333	+				-0.1
3,816,357	+		DZA65_RS17730	0.11	+1.4
3,816,357	+		DZA65_RS17730	0.11	+0.9
3,816,357	+		DZA65_RS17730	0.11	+0.2
3,816,358	-		DZA65_RS17730	0.11	-1.1
3,816,458	+		DZA65_RS17730	0.18	+0.9
3,816,459	-		DZA65_RS17730	0.18	+1.2
3,816,459	-		DZA65_RS17730	0.18	+0.3
3,816,490	+		DZA65_RS17730	0.20	+1.2
3,816,490	+		DZA65_RS17730	0.20	-1.6
3,816,490	+		DZA65_RS17730	0.20	-1.0
3,816,490	+		DZA65_RS17730	0.20	+0.2
3,816,490	+		DZA65_RS17730	0.20	-1.9
3,816,490	+		DZA65_RS17730	0.20	-0.1
3,816,490	+		DZA65_RS17730	0.20	-1.4
3,816,490	+		DZA65_RS17730	0.20	-0.9
3,816,490	+		DZA65_RS17730	0.20	+0.2
3,816,490	+		DZA65_RS17730	0.20	+1.5
3,816,490	+		DZA65_RS17730	0.20	-0.7
3,816,490	+		DZA65_RS17730	0.20	+0.6
3,816,491	-		DZA65_RS17730	0.20	-0.1
3,816,491	-		DZA65_RS17730	0.20	+0.9
3,816,491	-		DZA65_RS17730	0.20	+0.2
3,816,491	-		DZA65_RS17730	0.20	+0.7
3,816,491	-		DZA65_RS17730	0.20	-0.6
3,816,491	-		DZA65_RS17730	0.20	+0.4
3,816,491	-		DZA65_RS17730	0.20	+0.5
3,816,491	-		DZA65_RS17730	0.20	+0.2
3,816,491	-		DZA65_RS17730	0.20	-0.4
3,816,491	-		DZA65_RS17730	0.20	-0.1
3,816,491	-		DZA65_RS17730	0.20	-0.4
3,816,491	-		DZA65_RS17730	0.20	-0.9
3,816,491	-		DZA65_RS17730	0.20	+1.5
3,816,491	-		DZA65_RS17730	0.20	+0.7
3,816,492	+		DZA65_RS17730	0.20	-1.9
3,816,492	+		DZA65_RS17730	0.20	+0.5
3,816,492	+		DZA65_RS17730	0.20	-0.1
3,816,492	+		DZA65_RS17730	0.20	-0.5
3,816,492	+		DZA65_RS17730	0.20	-1.7
3,816,493	-		DZA65_RS17730	0.20	+0.4
3,816,493	-		DZA65_RS17730	0.20	+0.1
3,816,493	-		DZA65_RS17730	0.20	-0.4
3,816,493	-		DZA65_RS17730	0.20	-0.1
3,816,621	+		DZA65_RS17730	0.29	-3.3
3,816,622	-		DZA65_RS17730	0.29	+0.0
3,816,697	-		DZA65_RS17730	0.34	+0.2
3,816,724	+		DZA65_RS17730	0.36	-0.1
3,816,724	+				+0.9
3,816,725	-		DZA65_RS17730	0.36	+1.3
3,817,042	+		DZA65_RS17730	0.58	-0.1
3,817,043	-		DZA65_RS17730	0.58	-0.2
3,817,176	+		DZA65_RS17730	0.67	-0.8
3,817,176	+		DZA65_RS17730	0.67	+0.6
3,817,176	+		DZA65_RS17730	0.67	-0.4
3,817,177	-		DZA65_RS17730	0.67	+0.3
3,817,177	-		DZA65_RS17730	0.67	+1.5
3,817,177	-		DZA65_RS17730	0.67	-0.1
3,817,177	-		DZA65_RS17730	0.67	-1.1
3,817,177	-		DZA65_RS17730	0.67	-1.3
3,817,191	+		DZA65_RS17730	0.68	+1.9
3,817,220	+		DZA65_RS17730	0.70	-0.9
3,817,221	-		DZA65_RS17730	0.70	+0.2
3,817,223	+		DZA65_RS17730	0.70	-1.7
3,817,224	-		DZA65_RS17730	0.70	-0.9
3,817,224	-		DZA65_RS17730	0.70	+0.1
3,817,318	+		DZA65_RS17730	0.77	-0.4
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3,817,319	-		DZA65_RS17730	0.77	-0.1
3,817,441	+		DZA65_RS17730	0.85	-1.9
3,817,442	-		DZA65_RS17730	0.85	-0.2
3,817,533	+				+3.3
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3,818,616	+		DZA65_RS17735	0.84	-0.2
3,818,627	-				+1.9
3,818,649	-		DZA65_RS17735	0.87	-1.9