Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17630

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,796,562	-				-1.1
3,796,562	-				-0.0
3,796,562	-				+4.3
3,796,562	-				+0.2
3,796,562	-				+0.5
3,796,562	-				+0.6
3,796,562	-				+2.6
3,796,588	+				+0.7
3,796,588	+				-1.1
3,796,589	-				-2.0
3,796,589	-				-0.7
3,796,589	-				-0.2
3,796,589	-				+0.2
3,796,589	-				-0.5
3,796,589	-				+0.7
3,796,589	-				+0.1
3,796,645	-		DZA65_RS17620	0.12	+1.0
3,796,645	-		DZA65_RS17620	0.12	+2.1
3,796,673	-		DZA65_RS17620	0.17	+0.7
3,796,715	+		DZA65_RS17620	0.24	+0.6
3,796,715	+		DZA65_RS17620	0.24	-1.1
3,796,716	-		DZA65_RS17620	0.24	+1.5
3,796,716	-		DZA65_RS17620	0.24	-0.4
3,796,741	-		DZA65_RS17620	0.28	+1.6
3,796,741	-		DZA65_RS17620	0.28	+1.2
3,796,791	-		DZA65_RS17620	0.36	-0.7
3,796,791	-		DZA65_RS17620	0.36	+2.3
3,796,799	-		DZA65_RS17620	0.38	+0.8
3,796,964	+		DZA65_RS17620	0.65	-0.9
3,796,964	+		DZA65_RS17620	0.65	-1.4
3,796,965	-		DZA65_RS17620	0.65	-0.7
3,796,965	-		DZA65_RS17620	0.65	+0.3
3,796,965	-		DZA65_RS17620	0.65	-0.4
3,796,965	-		DZA65_RS17620	0.65	+0.7
3,796,965	-		DZA65_RS17620	0.65	-0.7
3,797,006	+		DZA65_RS17620	0.72	+0.3
3,797,007	-		DZA65_RS17620	0.72	-2.3
3,797,007	-		DZA65_RS17620	0.72	-0.4
3,797,007	-		DZA65_RS17620	0.72	+1.4
3,797,007	-		DZA65_RS17620	0.72	+0.1
3,797,034	+		DZA65_RS17620	0.77	-1.0
3,797,035	-		DZA65_RS17620	0.77	+2.1
3,797,091	-		DZA65_RS17620	0.86	-0.6
3,797,100	+		DZA65_RS17620	0.88	-2.6
3,797,100	+		DZA65_RS17620	0.88	-2.3
3,797,100	+		DZA65_RS17620	0.88	-0.1
3,797,104	+		DZA65_RS17620	0.88	-0.1
3,797,105	-		DZA65_RS17620	0.88	-2.2
3,797,120	+				-1.7
3,797,120	+				+0.3
3,797,121	-				+0.4
3,797,126	+				-0.7
3,797,126	+				-0.1
3,797,127	-				-0.3
3,797,127	-				-0.1
3,797,145	+				+1.5
3,797,146	-				+0.9
3,797,169	+				-0.3
3,797,169	+				-0.2
3,797,169	+				+0.8
3,797,169	+				-0.4
3,797,170	-				+0.1
3,797,173	-				+0.7
3,797,192	-				+0.6
3,797,209	+				-3.0
3,797,209	+				-0.3
3,797,210	-				-0.3
3,797,232	+				-0.1
3,797,233	-				-0.4
3,797,256	+				-0.4
3,797,256	+				+0.5
3,797,256	+				-1.4
3,797,256	+				-1.9
3,797,257	-				-0.1
3,797,257	-				+0.4
3,797,257	-				-0.4
3,797,257	-				+1.2
3,797,272	+				+0.0
3,797,273	-				-0.1
3,797,273	-				+0.2
3,797,291	+				+0.9
3,797,292	-				-0.4
3,797,292	-				+0.5
3,797,344	+				-1.7
3,797,344	+				+0.2
3,797,345	-		DZA65_RS17625	0.10	+0.1
3,797,345	-		DZA65_RS17625	0.10	-1.1
3,797,345	-		DZA65_RS17625	0.10	-1.3
3,797,410	+		DZA65_RS17625	0.40	+0.1
3,797,410	+		DZA65_RS17625	0.40	-0.1
3,797,411	-		DZA65_RS17625	0.40	-0.0
3,797,451	-		DZA65_RS17625	0.58	-0.7
3,797,451	-		DZA65_RS17625	0.58	+0.6
3,797,451	-		DZA65_RS17625	0.58	+2.7
3,797,505	+		DZA65_RS17625	0.82	-0.1
3,797,529	+				+1.5
3,797,530	-				+1.2
3,797,563	+				-1.4
3,797,563	+				+2.5
3,797,564	-				-0.9
3,797,564	-				-0.2
3,797,564	-				+1.3
3,797,595	-				-2.0
3,797,618	+				-0.4
3,797,637	-				+0.4
3,797,637	-				-0.8
3,797,639	+				-0.7
3,797,639	+				-1.4
3,797,640	-				+0.1
3,797,642	+				+0.5
3,797,643	-				-0.7
3,797,643	-				-1.4
3,797,643	-				+0.6
3,797,662	+				-0.5
3,797,662	+				+0.8
3,797,662	+				+0.4
3,797,662	+				+0.1
3,797,663	-				-2.9
3,797,663	-				+0.3
3,797,663	-				-1.4
3,797,663	-				-0.3
3,797,663	-				-0.9
3,797,693	+				-0.1
3,797,694	-				-0.3
3,797,694	-				-0.6
3,797,694	-				-0.7
3,797,798	+		DZA65_RS17630	0.16	+0.4
3,797,827	-		DZA65_RS17630	0.18	+0.3
3,797,834	+		DZA65_RS17630	0.19	+0.5
3,797,835	-		DZA65_RS17630	0.19	+0.0
3,797,881	+		DZA65_RS17630	0.22	-0.1
3,797,881	+		DZA65_RS17630	0.22	-1.3
3,797,881	+		DZA65_RS17630	0.22	-0.5
3,797,881	+		DZA65_RS17630	0.22	+0.4
3,797,888	+		DZA65_RS17630	0.23	+0.0
3,797,888	+		DZA65_RS17630	0.23	+0.2
3,797,889	-		DZA65_RS17630	0.23	-1.5
3,797,889	-		DZA65_RS17630	0.23	+0.2
3,797,889	-		DZA65_RS17630	0.23	-0.6
3,798,017	+		DZA65_RS17630	0.32	+1.2
3,798,018	-		DZA65_RS17630	0.32	-0.3
3,798,018	-		DZA65_RS17630	0.32	+0.3
3,798,137	+		DZA65_RS17630	0.40	-1.1
3,798,137	+		DZA65_RS17630	0.40	-1.1
3,798,137	+		DZA65_RS17630	0.40	-0.3
3,798,137	+		DZA65_RS17630	0.40	-0.9
3,798,137	+		DZA65_RS17630	0.40	-1.0
3,798,138	-		DZA65_RS17630	0.40	-0.5
3,798,157	+		DZA65_RS17630	0.41	+0.4
3,798,158	-		DZA65_RS17630	0.41	-0.1
3,798,158	-		DZA65_RS17630	0.41	+1.1
3,798,173	+		DZA65_RS17630	0.43	+0.5
3,798,174	-		DZA65_RS17630	0.43	+0.3
3,798,195	+		DZA65_RS17630	0.44	-1.9
3,798,196	-		DZA65_RS17630	0.44	-0.1
3,798,204	+		DZA65_RS17630	0.45	-0.1
3,798,204	+		DZA65_RS17630	0.45	+0.2
3,798,215	+		DZA65_RS17630	0.45	+0.8
3,798,216	-		DZA65_RS17630	0.46	-0.9
3,798,216	-		DZA65_RS17630	0.46	+0.3
3,798,219	+		DZA65_RS17630	0.46	-1.6
3,798,237	+		DZA65_RS17630	0.47	-0.8
3,798,237	+		DZA65_RS17630	0.47	-0.4
3,798,238	-		DZA65_RS17630	0.47	+0.9
3,798,258	+		DZA65_RS17630	0.48	-0.2
3,798,258	+		DZA65_RS17630	0.48	+0.6
3,798,258	+		DZA65_RS17630	0.48	-0.5
3,798,259	-		DZA65_RS17630	0.49	-0.9
3,798,259	-		DZA65_RS17630	0.49	-0.3
3,798,262	+		DZA65_RS17630	0.49	-0.9
3,798,262	+		DZA65_RS17630	0.49	+1.5
3,798,262	+		DZA65_RS17630	0.49	-1.4
3,798,263	-		DZA65_RS17630	0.49	-0.2
3,798,263	-		DZA65_RS17630	0.49	+0.4
3,798,279	+		DZA65_RS17630	0.50	+1.2
3,798,590	+		DZA65_RS17630	0.72	-0.9
3,798,590	+		DZA65_RS17630	0.72	-2.2
3,798,591	-		DZA65_RS17630	0.72	+0.2
3,798,591	-		DZA65_RS17630	0.72	-2.9
3,798,591	-		DZA65_RS17630	0.72	-0.9
3,798,591	-		DZA65_RS17630	0.72	+2.5
3,798,591	-		DZA65_RS17630	0.72	+0.7
3,798,591	-		DZA65_RS17630	0.72	+0.2
3,798,591	-		DZA65_RS17630	0.72	+0.3
3,798,592	+		DZA65_RS17630	0.72	+0.2
3,798,592	+		DZA65_RS17630	0.72	-1.1
3,798,592	+		DZA65_RS17630	0.72	+0.5
3,798,592	+		DZA65_RS17630	0.72	+1.9
3,798,593	-		DZA65_RS17630	0.72	+1.0
3,798,593	-		DZA65_RS17630	0.72	-0.7
3,798,664	+		DZA65_RS17630	0.77	+0.6
3,798,664	+		DZA65_RS17630	0.77	-0.2
3,798,664	+		DZA65_RS17630	0.77	-0.5
3,798,665	-		DZA65_RS17630	0.77	-1.9
3,798,665	-		DZA65_RS17630	0.77	-0.5
3,798,665	-		DZA65_RS17630	0.77	-0.4
3,798,667	+		DZA65_RS17630	0.77	-0.9
3,798,667	+		DZA65_RS17630	0.77	+0.0
3,798,667	+		DZA65_RS17630	0.77	-0.3
3,798,667	+		DZA65_RS17630	0.77	+2.2
3,798,667	+		DZA65_RS17630	0.77	+0.5
3,798,667	+		DZA65_RS17630	0.77	-0.3
3,798,668	-		DZA65_RS17630	0.77	-0.5
3,798,668	-		DZA65_RS17630	0.77	-0.4
3,798,668	-		DZA65_RS17630	0.77	-0.1
3,798,668	-		DZA65_RS17630	0.77	+1.9
3,798,670	+		DZA65_RS17630	0.77	+0.1
3,798,670	+		DZA65_RS17630	0.77	+1.5
3,798,671	-		DZA65_RS17630	0.77	-2.3
3,798,671	-		DZA65_RS17630	0.77	-0.4
3,798,671	-		DZA65_RS17630	0.77	-0.7
3,798,671	-		DZA65_RS17630	0.77	+1.4
3,798,671	-		DZA65_RS17630	0.77	-0.0
3,798,718	+		DZA65_RS17630	0.80	-0.4
3,798,718	+		DZA65_RS17630	0.80	+0.4
3,798,718	+		DZA65_RS17630	0.80	+1.1
3,798,739	+		DZA65_RS17630	0.82	+0.9
3,798,740	-		DZA65_RS17630	0.82	+1.1
3,798,749	+		DZA65_RS17630	0.83	+0.7
3,798,749	+		DZA65_RS17630	0.83	-1.0
3,798,750	-		DZA65_RS17630	0.83	+1.1
3,798,764	+		DZA65_RS17630	0.84	+0.3
3,798,764	+		DZA65_RS17630	0.84	-0.0
3,798,764	+		DZA65_RS17630	0.84	+0.2
3,798,764	+		DZA65_RS17630	0.84	+0.2
3,798,764	+				+5.2
3,798,765	-		DZA65_RS17630	0.84	-0.7
3,798,765	-		DZA65_RS17630	0.84	-1.5
3,798,765	-		DZA65_RS17630	0.84	+1.4
3,798,765	-		DZA65_RS17630	0.84	-2.0
3,798,766	+		DZA65_RS17630	0.84	+1.4
3,798,766	+		DZA65_RS17630	0.84	+0.9
3,798,766	+				+2.9
3,798,766	+		DZA65_RS17630	0.84	-0.3
3,798,766	+		DZA65_RS17630	0.84	+1.4
3,798,766	+		DZA65_RS17630	0.84	-1.3
3,798,766	+		DZA65_RS17630	0.84	+0.1
3,798,766	+		DZA65_RS17630	0.84	-2.5
3,798,766	+		DZA65_RS17630	0.84	+0.3
3,798,766	+		DZA65_RS17630	0.84	-0.2
3,798,766	+		DZA65_RS17630	0.84	+0.9
3,798,766	+		DZA65_RS17630	0.84	+0.1
3,798,766	+		DZA65_RS17630	0.84	+0.0
3,798,766	+		DZA65_RS17630	0.84	-0.3
3,798,766	+		DZA65_RS17630	0.84	+1.1
3,798,766	+		DZA65_RS17630	0.84	-0.5
3,798,766	+		DZA65_RS17630	0.84	-0.3
3,798,766	+		DZA65_RS17630	0.84	-0.1
3,798,766	+		DZA65_RS17630	0.84	+2.2
3,798,766	+		DZA65_RS17630	0.84	-0.1
3,798,767	-		DZA65_RS17630	0.84	+0.1
3,798,767	-		DZA65_RS17630	0.84	-0.3
3,798,767	-		DZA65_RS17630	0.84	+0.1
3,798,767	-				+0.9
3,798,767	-		DZA65_RS17630	0.84	-1.1
3,798,767	-		DZA65_RS17630	0.84	-1.1
3,798,767	-		DZA65_RS17630	0.84	+1.7
3,798,767	-		DZA65_RS17630	0.84	+0.3
3,798,767	-		DZA65_RS17630	0.84	+0.9
3,798,767	-		DZA65_RS17630	0.84	+0.1
3,798,767	-		DZA65_RS17630	0.84	+5.4
3,798,767	-		DZA65_RS17630	0.84	-0.4
3,798,767	-		DZA65_RS17630	0.84	+0.8
3,798,767	-		DZA65_RS17630	0.84	-1.1
3,798,767	-		DZA65_RS17630	0.84	+0.4
3,798,767	-		DZA65_RS17630	0.84	+0.9
3,798,767	-		DZA65_RS17630	0.84	-0.1
3,798,803	-		DZA65_RS17630	0.86	-0.5
3,798,804	+		DZA65_RS17630	0.86	-0.9
3,798,819	-		DZA65_RS17630	0.87	-0.4
3,798,876	+				-0.4
3,798,876	+				+1.3
3,798,876	+				-2.1
3,798,876	+				+0.2
3,798,876	+				-1.8
3,798,876	+				+0.1
3,798,876	+				+0.5
3,798,877	-				+0.5
3,798,877	-				-1.1
3,798,877	-				+1.1
3,798,877	-				-0.1
3,798,877	-				+0.5
3,798,945	+				+0.4
3,798,953	+				+1.3
3,798,953	+				-0.9
3,798,954	-				-0.8
3,798,998	+				+0.1
3,798,999	-				-0.7
3,798,999	-				+0.1
3,798,999	-				+1.1
3,798,999	-				+0.0
3,799,021	+				-0.3
3,799,021	+				+0.8
3,799,021	+				+0.1
3,799,021	+				+0.2
3,799,021	+				+6.3
3,799,022	-				-0.7
3,799,022	-				+0.3
3,799,022	-				+0.8
3,799,022	-				+0.5
3,799,023	+				+0.3
3,799,023	+				-0.6
3,799,023	+				+0.4
3,799,023	+				+0.2
3,799,023	+				+0.4
3,799,023	+				+1.1
3,799,023	+				+0.7
3,799,024	-				-0.3
3,799,053	-				-0.8
3,799,053	-				-0.2
3,799,088	+				+1.9
3,799,089	-				-0.0
3,799,136	-		DZA65_RS17635	0.13	+1.5
3,799,136	-		DZA65_RS17635	0.13	+0.9
3,799,136	-		DZA65_RS17635	0.13	+0.2
3,799,136	-		DZA65_RS17635	0.13	-0.1
3,799,136	-		DZA65_RS17635	0.13	-1.3
3,799,180	+		DZA65_RS17635	0.17	-0.5
3,799,180	+		DZA65_RS17635	0.17	+0.3
3,799,180	+		DZA65_RS17635	0.17	-0.1
3,799,180	+		DZA65_RS17635	0.17	+0.4
3,799,181	-		DZA65_RS17635	0.17	-0.6
3,799,181	-		DZA65_RS17635	0.17	+0.5
3,799,181	-		DZA65_RS17635	0.17	-1.2
3,799,181	-		DZA65_RS17635	0.17	+2.9
3,799,181	-		DZA65_RS17635	0.17	+0.1
3,799,181	-		DZA65_RS17635	0.17	-1.1
3,799,181	-		DZA65_RS17635	0.17	+0.3
3,799,181	-		DZA65_RS17635	0.17	+0.1
3,799,182	+		DZA65_RS17635	0.17	+0.1
3,799,182	+		DZA65_RS17635	0.17	-0.7
3,799,182	+		DZA65_RS17635	0.17	-0.9
3,799,182	+		DZA65_RS17635	0.17	-2.1
3,799,182	+		DZA65_RS17635	0.17	-0.8
3,799,182	+		DZA65_RS17635	0.17	-0.2
3,799,182	+		DZA65_RS17635	0.17	+0.9
3,799,182	+		DZA65_RS17635	0.17	-0.3
3,799,182	+		DZA65_RS17635	0.17	+0.1
3,799,182	+		DZA65_RS17635	0.17	-2.1
3,799,182	+		DZA65_RS17635	0.17	-0.6
3,799,182	+		DZA65_RS17635	0.17	+1.2
3,799,182	+		DZA65_RS17635	0.17	+0.0
3,799,182	+		DZA65_RS17635	0.17	-0.7
3,799,183	-		DZA65_RS17635	0.17	-0.4
3,799,183	-		DZA65_RS17635	0.17	-0.4
3,799,183	-		DZA65_RS17635	0.17	-1.9
3,799,183	-		DZA65_RS17635	0.17	-0.1
3,799,183	-		DZA65_RS17635	0.17	-0.2
3,799,183	-		DZA65_RS17635	0.17	-0.8
3,799,183	-		DZA65_RS17635	0.17	+0.8
3,799,183	-		DZA65_RS17635	0.17	+1.7
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3,799,183	-		DZA65_RS17635	0.17	-2.1
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3,799,183	-		DZA65_RS17635	0.17	-0.6
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