Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17140

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,701,421	+		DZA65_RS17130	0.61	-1.2
3,701,421	+		DZA65_RS17130	0.61	-2.6
3,701,421	+		DZA65_RS17130	0.61	-0.9
3,701,422	-		DZA65_RS17130	0.61	+0.2
3,701,503	+		DZA65_RS17130	0.73	+0.4
3,701,558	+		DZA65_RS17130	0.80	+0.6
3,701,558	+		DZA65_RS17130	0.80	+0.8
3,701,558	+		DZA65_RS17130	0.80	-0.4
3,701,558	+		DZA65_RS17130	0.80	+0.3
3,701,558	+		DZA65_RS17130	0.80	+0.8
3,701,558	+		DZA65_RS17130	0.80	+0.8
3,701,559	-		DZA65_RS17130	0.80	-0.9
3,701,559	-		DZA65_RS17130	0.80	+0.2
3,701,559	-		DZA65_RS17130	0.80	+1.3
3,701,559	-		DZA65_RS17130	0.80	+1.1
3,701,559	-		DZA65_RS17130	0.80	-0.4
3,701,559	-		DZA65_RS17130	0.80	+1.6
3,701,559	-		DZA65_RS17130	0.80	+0.2
3,701,559	-		DZA65_RS17130	0.80	-0.2
3,701,572	-		DZA65_RS17130	0.82	+0.8
3,701,581	+		DZA65_RS17130	0.83	+1.3
3,701,584	+		DZA65_RS17130	0.84	+1.3
3,701,584	+		DZA65_RS17130	0.84	-0.0
3,701,585	-		DZA65_RS17130	0.84	+0.4
3,701,585	-		DZA65_RS17130	0.84	-0.6
3,701,623	-		DZA65_RS17130	0.89	+0.8
3,701,623	-		DZA65_RS17130	0.89	+0.3
3,701,623	-		DZA65_RS17130	0.89	-0.4
3,701,633	+				+0.7
3,701,648	+				-0.9
3,701,649	-				-0.1
3,701,649	-				+0.2
3,701,656	+				-1.2
3,701,657	-				+0.2
3,701,657	-				-0.6
3,701,669	-				+0.5
3,701,679	-				-0.6
3,701,697	+				-0.8
3,701,698	-				+0.2
3,701,698	-				-0.8
3,701,698	-				-1.2
3,701,713	+				-0.8
3,701,713	+				+0.8
3,701,713	+				-0.4
3,701,713	+				-1.5
3,701,713	+				+0.2
3,701,714	-				+0.6
3,701,714	-				-1.2
3,701,714	-				+0.3
3,701,717	+				-0.9
3,701,718	-				+0.2
3,701,718	-				+0.2
3,701,718	-				+0.2
3,701,718	-				+0.5
3,701,720	+				-0.4
3,701,720	+				-0.4
3,701,720	+				-0.2
3,701,720	+				+1.2
3,701,720	+				+0.6
3,701,721	-				-1.8
3,701,721	-				-0.4
3,701,721	-				-1.4
3,701,721	-				-0.9
3,701,721	-				-0.0
3,701,721	-				-0.0
3,701,733	+				-1.3
3,701,733	+				+0.6
3,701,734	-				+1.1
3,701,734	-				+0.2
3,701,734	-				+0.8
3,701,784	+				-0.5
3,701,784	+				-0.8
3,701,798	+				+0.1
3,701,798	+				+0.0
3,701,799	-				+0.1
3,701,802	+				+0.9
3,701,804	+				-1.1
3,701,804	+				+0.5
3,701,855	+				-0.4
3,701,855	+				-0.3
3,701,855	+				-0.3
3,701,855	+				-0.6
3,701,859	+				-0.0
3,701,859	+				+0.1
3,702,328	+				+1.4
3,702,329	-				+0.4
3,702,378	+				+0.5
3,702,379	-				+0.1
3,702,379	-				+0.2
3,702,379	-				-0.8
3,702,413	-				+0.8
3,702,420	+				+0.4
3,702,420	+				-0.2
3,702,439	+				-0.6
3,702,439	+				+1.5
3,702,440	-				+0.6
3,702,440	-				-0.6
3,702,440	-				+0.4
3,702,440	-				-0.4
3,702,511	+				+0.2
3,702,511	+				+0.1
3,702,511	+				-1.8
3,702,511	+				-1.8
3,702,512	-		DZA65_RS17140	0.10	-1.1
3,702,512	-		DZA65_RS17140	0.10	-1.4
3,702,512	-		DZA65_RS17140	0.10	-1.2
3,702,512	-		DZA65_RS17140	0.10	-0.4
3,702,512	-		DZA65_RS17140	0.10	-1.6
3,702,512	-		DZA65_RS17140	0.10	+2.4
3,702,512	-		DZA65_RS17140	0.10	+0.8
3,702,552	+		DZA65_RS17140	0.14	+0.5
3,702,600	+		DZA65_RS17140	0.20	+0.7
3,702,600	+		DZA65_RS17140	0.20	-1.3
3,702,601	-		DZA65_RS17140	0.20	-2.0
3,702,601	-		DZA65_RS17140	0.20	-0.2
3,702,622	+		DZA65_RS17140	0.22	-1.8
3,702,622	+		DZA65_RS17140	0.22	+0.2
3,702,622	+		DZA65_RS17140	0.22	-1.2
3,702,622	+		DZA65_RS17140	0.22	-0.2
3,702,623	-		DZA65_RS17140	0.22	+1.2
3,702,623	-		DZA65_RS17140	0.22	+0.6
3,702,719	-		DZA65_RS17140	0.33	+0.2
3,702,719	-		DZA65_RS17140	0.33	-1.2
3,702,719	-		DZA65_RS17140	0.33	-0.3
3,702,721	+		DZA65_RS17140	0.33	-0.3
3,702,721	+		DZA65_RS17140	0.33	-0.0
3,702,721	+		DZA65_RS17140	0.33	+0.8
3,702,721	+		DZA65_RS17140	0.33	-0.8
3,702,721	+		DZA65_RS17140	0.33	+0.8
3,702,722	-		DZA65_RS17140	0.33	-0.5
3,702,722	-		DZA65_RS17140	0.33	+0.7
3,702,886	-		DZA65_RS17140	0.51	+0.3
3,702,886	-		DZA65_RS17140	0.51	+0.7
3,702,906	+		DZA65_RS17140	0.53	+0.6
3,702,906	+				+0.4
3,702,906	+		DZA65_RS17140	0.53	-2.9
3,702,906	+				+0.2
3,702,906	+		DZA65_RS17140	0.53	-0.8
3,702,907	-		DZA65_RS17140	0.53	-0.2
3,702,907	-		DZA65_RS17140	0.53	+0.3
3,702,909	+		DZA65_RS17140	0.54	-1.3
3,702,909	+		DZA65_RS17140	0.54	-1.5
3,702,909	+		DZA65_RS17140	0.54	+0.1
3,702,909	+		DZA65_RS17140	0.54	-0.6
3,702,910	-		DZA65_RS17140	0.54	+0.1
3,702,937	+		DZA65_RS17140	0.57	-1.1
3,702,938	-		DZA65_RS17140	0.57	-0.6
3,702,938	-		DZA65_RS17140	0.57	-0.8
3,702,986	+		DZA65_RS17140	0.62	+0.8
3,702,986	+		DZA65_RS17140	0.62	+1.0
3,702,986	+		DZA65_RS17140	0.62	-2.0
3,702,987	-		DZA65_RS17140	0.62	-0.4
3,702,987	-		DZA65_RS17140	0.62	+2.7
3,702,987	-		DZA65_RS17140	0.62	-0.0
3,703,034	+		DZA65_RS17140	0.67	-1.4
3,703,035	-		DZA65_RS17140	0.68	-0.5
3,703,035	-		DZA65_RS17140	0.68	-2.4
3,703,035	-		DZA65_RS17140	0.68	-0.1
3,703,036	+		DZA65_RS17140	0.68	-0.2
3,703,036	+		DZA65_RS17140	0.68	+0.1
3,703,037	-		DZA65_RS17140	0.68	-0.4
3,703,290	+				+1.6
3,703,290	+				+2.0
3,703,291	-				+0.6
3,703,291	-				+1.1
3,703,291	-				-0.1
3,703,304	+				+1.6
3,703,304	+				-0.8
3,703,305	-				-1.0
3,703,338	+				+2.6
3,703,338	+				-0.8
3,703,338	+				+1.2
3,703,339	-				-1.5
3,703,339	-				+0.1
3,703,339	-				-0.4
3,703,339	-				-0.4
3,703,339	-				-0.9
3,703,339	-				-1.5
3,703,339	-				-2.0
3,703,339	-				-0.5
3,703,339	-				-0.4
3,703,394	+				+0.2
3,703,394	+				-0.6
3,703,394	+				+0.4
3,703,395	-				-0.2
3,703,397	+				-0.6
3,703,397	+				+0.7
3,703,397	+				+1.1
3,703,397	+				-1.4
3,703,416	-				-1.8
3,703,433	-				-0.3
3,703,529	+				-0.9
3,703,529	+				+0.8
3,703,530	-				-0.4
3,703,530	-				-0.4
3,703,549	+		DZA65_RS17145	0.11	+0.2
3,703,550	-		DZA65_RS17145	0.11	-1.8
3,703,550	-		DZA65_RS17145	0.11	-0.5
3,703,550	-		DZA65_RS17145	0.11	+1.8
3,703,554	+		DZA65_RS17145	0.11	-0.6
3,703,584	+		DZA65_RS17145	0.13	+0.5
3,703,584	+		DZA65_RS17145	0.13	-0.4
3,703,832	+				-0.2
3,703,833	-		DZA65_RS17145	0.31	-1.7
3,703,911	+		DZA65_RS17145	0.37	-0.2
3,703,941	+		DZA65_RS17145	0.39	-1.5
3,704,190	+		DZA65_RS17145	0.56	+0.1
3,704,190	+		DZA65_RS17145	0.56	-0.2
3,704,208	+		DZA65_RS17145	0.58	-1.1
3,704,248	-		DZA65_RS17145	0.61	-1.2