Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16560

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,576,800	+				-0.8
3,576,801	-				-1.7
3,576,801	-				+0.1
3,576,801	-				-1.6
3,576,902	-		DZA65_RS16555	0.19	-0.3
3,576,902	-		DZA65_RS16555	0.19	+1.6
3,576,933	-		DZA65_RS16555	0.22	+0.8
3,576,973	-		DZA65_RS16555	0.25	-1.0
3,576,978	+		DZA65_RS16555	0.26	-2.0
3,576,979	-		DZA65_RS16555	0.26	+0.1
3,576,979	-		DZA65_RS16555	0.26	+1.2
3,577,041	-				+2.3
3,577,041	-		DZA65_RS16555	0.32	-0.1
3,577,114	-		DZA65_RS16555	0.38	-0.5
3,577,116	+				+0.8
3,577,116	+		DZA65_RS16555	0.39	-0.8
3,577,117	-		DZA65_RS16555	0.39	-0.6
3,577,117	-		DZA65_RS16555	0.39	+0.2
3,577,117	-		DZA65_RS16555	0.39	+0.8
3,577,117	-		DZA65_RS16555	0.39	-0.6
3,577,117	-		DZA65_RS16555	0.39	+1.1
3,577,117	-		DZA65_RS16555	0.39	+0.8
3,577,152	+		DZA65_RS16555	0.42	-2.6
3,577,549	+		DZA65_RS16555	0.79	-3.1
3,577,550	-		DZA65_RS16555	0.79	-1.6
3,577,550	-		DZA65_RS16555	0.79	+1.1
3,577,550	-		DZA65_RS16555	0.79	-1.2
3,577,550	-		DZA65_RS16555	0.79	-0.0
3,577,567	-		DZA65_RS16555	0.80	+0.8
3,577,754	-				+1.0
3,577,776	-				-0.0
3,577,776	-				+0.2
3,577,792	-				-2.2
3,577,792	-				-1.1
3,577,792	-				-0.7
3,577,792	-				-0.1
3,577,792	-				+0.3
3,577,829	+		DZA65_RS16560	0.12	-0.8
3,577,830	-		DZA65_RS16560	0.13	+0.4
3,577,841	-		DZA65_RS16560	0.16	+0.3
3,577,848	-		DZA65_RS16560	0.18	+1.1
3,577,848	-		DZA65_RS16560	0.18	+0.6
3,577,848	-				+2.8
3,577,848	-		DZA65_RS16560	0.18	+1.6
3,577,848	-		DZA65_RS16560	0.18	-0.2
3,578,022	-		DZA65_RS16560	0.76	+0.5
3,578,022	-		DZA65_RS16560	0.76	-1.2
3,578,022	-		DZA65_RS16560	0.76	+0.8
3,578,022	-		DZA65_RS16560	0.76	-1.2
3,578,049	+		DZA65_RS16560	0.85	+0.8
3,578,050	-		DZA65_RS16560	0.85	+1.5
3,578,050	-		DZA65_RS16560	0.85	+0.2
3,578,050	-		DZA65_RS16560	0.85	+1.4
3,578,050	-		DZA65_RS16560	0.85	-0.5
3,578,050	-		DZA65_RS16560	0.85	+0.2
3,578,050	-				-0.8
3,578,050	-		DZA65_RS16560	0.85	+0.8
3,578,050	-		DZA65_RS16560	0.85	-0.7
3,578,050	-		DZA65_RS16560	0.85	-0.2
3,578,050	-		DZA65_RS16560	0.85	+0.8
3,578,087	+				-0.2
3,578,102	+				-1.9
3,578,102	+				-1.8
3,578,103	-				+1.1
3,578,103	-				+1.8
3,578,103	-				-0.8
3,578,103	-				-0.2
3,578,103	-				+0.3
3,578,103	-				+1.3
3,578,103	-				-0.5
3,578,103	-				+0.8
3,578,103	-				-1.2
3,578,103	-				+0.8
3,578,103	-				+0.8
3,578,104	+				-2.4
3,578,128	-				-1.2
3,578,128	-				-0.2
3,578,136	+				-0.8
3,578,136	+				-1.4
3,578,136	+				-1.0
3,578,136	+				-0.6
3,578,137	-				+0.4
3,578,137	-				+0.2
3,578,137	-				+0.1
3,578,137	-				-0.2
3,578,137	-				+0.4
3,578,137	-				+0.1
3,578,137	-				-0.2
3,578,137	-				+0.1
3,578,137	-				+0.4
3,578,137	-				+0.8
3,578,137	-				+0.5
3,578,137	-				-0.7
3,578,137	-				-1.7
3,578,161	-				+0.4
3,578,161	-				-1.1
3,578,161	-				-0.1
3,578,161	-				+0.3
3,578,161	-				-0.0
3,578,161	-				+0.8
3,578,161	-				+0.0
3,578,161	-				+1.6
3,578,161	-				-0.7
3,578,161	-				-0.2
3,578,161	-				+0.3
3,578,161	-				+0.5
3,578,180	+				-0.6
3,578,181	-				-1.8
3,578,181	-				-1.6
3,578,181	-				+0.5
3,578,181	-				+1.5
3,578,278	-				+1.1
3,578,278	-				+1.7
3,578,298	+				+0.2
3,578,299	-				+2.5
3,578,299	-				-1.2
3,578,321	+				+0.9
3,578,322	-				+1.0
3,578,322	-				-0.8
3,578,421	-		DZA65_RS16565	0.20	-0.1
3,578,606	+		DZA65_RS16565	0.42	-0.2
3,578,606	+		DZA65_RS16565	0.42	+0.0
3,578,606	+		DZA65_RS16565	0.42	-0.2
3,578,606	+		DZA65_RS16565	0.42	-0.2
3,578,606	+		DZA65_RS16565	0.42	+0.3
3,578,606	+		DZA65_RS16565	0.42	-2.2
3,578,606	+		DZA65_RS16565	0.42	-1.6
3,578,606	+		DZA65_RS16565	0.42	-0.6
3,578,607	-		DZA65_RS16565	0.42	+2.9
3,578,607	-		DZA65_RS16565	0.42	+2.0
3,578,607	-		DZA65_RS16565	0.42	+1.6
3,578,607	-		DZA65_RS16565	0.42	-0.1
3,578,607	-		DZA65_RS16565	0.42	+0.8
3,578,607	-		DZA65_RS16565	0.42	-0.5
3,578,607	-		DZA65_RS16565	0.42	+0.6
3,578,607	-		DZA65_RS16565	0.42	+1.6
3,578,607	-		DZA65_RS16565	0.42	-0.7
3,578,607	-		DZA65_RS16565	0.42	-1.3
3,578,607	-		DZA65_RS16565	0.42	-0.6
3,578,607	-		DZA65_RS16565	0.42	+0.8
3,578,607	-		DZA65_RS16565	0.42	-0.1
3,578,607	-		DZA65_RS16565	0.42	+0.4
3,578,655	+		DZA65_RS16565	0.48	+0.8
3,578,656	-		DZA65_RS16565	0.48	+0.8
3,578,656	-		DZA65_RS16565	0.48	-1.6
3,578,656	-		DZA65_RS16565	0.48	-1.0
3,578,658	-		DZA65_RS16565	0.49	+1.5
3,578,669	+		DZA65_RS16565	0.50	-0.4
3,578,669	+		DZA65_RS16565	0.50	-0.5
3,578,669	+		DZA65_RS16565	0.50	+1.0
3,578,669	+		DZA65_RS16565	0.50	+0.4
3,578,669	+		DZA65_RS16565	0.50	+0.0
3,578,669	+		DZA65_RS16565	0.50	-0.8
3,578,669	+		DZA65_RS16565	0.50	-1.6
3,578,669	+		DZA65_RS16565	0.50	-1.9
3,578,669	+		DZA65_RS16565	0.50	-1.0
3,578,669	+		DZA65_RS16565	0.50	+1.6
3,578,669	+		DZA65_RS16565	0.50	+0.2
3,578,669	+		DZA65_RS16565	0.50	-0.4
3,578,669	+		DZA65_RS16565	0.50	-0.2
3,578,669	+		DZA65_RS16565	0.50	-1.7
3,578,669	+		DZA65_RS16565	0.50	+2.6
3,578,669	+		DZA65_RS16565	0.50	+0.1
3,578,669	+		DZA65_RS16565	0.50	-0.9
3,578,669	+		DZA65_RS16565	0.50	-1.7
3,578,669	+		DZA65_RS16565	0.50	+0.1
3,578,669	+		DZA65_RS16565	0.50	+0.4
3,578,670	-		DZA65_RS16565	0.50	-2.0
3,578,670	-		DZA65_RS16565	0.50	+0.0
3,578,670	-		DZA65_RS16565	0.50	+0.5
3,578,670	-		DZA65_RS16565	0.50	+0.1
3,578,670	-		DZA65_RS16565	0.50	-0.3
3,578,670	-		DZA65_RS16565	0.50	-0.8
3,578,670	-		DZA65_RS16565	0.50	-0.4
3,578,670	-		DZA65_RS16565	0.50	+1.5
3,578,670	-		DZA65_RS16565	0.50	+2.1
3,578,670	-		DZA65_RS16565	0.50	+1.6
3,578,670	-		DZA65_RS16565	0.50	-1.6
3,578,670	-		DZA65_RS16565	0.50	-0.2
3,578,670	-		DZA65_RS16565	0.50	+0.2
3,578,670	-		DZA65_RS16565	0.50	-0.0
3,578,670	-		DZA65_RS16565	0.50	+1.6
3,578,670	-		DZA65_RS16565	0.50	-1.1
3,578,670	-		DZA65_RS16565	0.50	+0.5
3,578,670	-		DZA65_RS16565	0.50	+0.9
3,578,673	+		DZA65_RS16565	0.50	+0.4
3,578,673	+		DZA65_RS16565	0.50	-0.0
3,578,674	-		DZA65_RS16565	0.50	-0.1
3,578,674	-		DZA65_RS16565	0.50	-0.2
3,578,674	-		DZA65_RS16565	0.50	+0.5
3,578,701	+		DZA65_RS16565	0.54	-0.2
3,578,702	-		DZA65_RS16565	0.54	+0.9
3,578,702	-		DZA65_RS16565	0.54	-1.4
3,578,725	-		DZA65_RS16565	0.57	-1.9
3,578,829	+		DZA65_RS16565	0.69	-1.6
3,578,829	+		DZA65_RS16565	0.69	+0.1
3,578,987	+		DZA65_RS16565	0.89	+1.8
3,578,988	-		DZA65_RS16565	0.89	+2.0
3,578,988	-		DZA65_RS16565	0.89	+0.8
3,578,988	-		DZA65_RS16565	0.89	-0.7
3,578,988	-		DZA65_RS16565	0.89	-0.7
3,578,991	+		DZA65_RS16565	0.89	+0.2
3,578,992	-		DZA65_RS16565	0.89	-0.0
3,579,072	+				+0.3
3,579,072	+				-0.5
3,579,072	+				+0.3
3,579,072	+				+0.9
3,579,072	+				+0.4
3,579,072	+				-0.6
3,579,072	+				+2.0
3,579,073	-				+0.8
3,579,073	-				+1.0
3,579,073	-				-0.2
3,579,073	-				-0.2
3,579,073	-				+0.3
3,579,073	-				+0.4
3,579,073	-				+0.9
3,579,076	+				+0.2
3,579,076	+				-0.5
3,579,076	+				-0.0
3,579,077	-				+0.3
3,579,077	-				+0.2
3,579,077	-				+0.0
3,579,077	-				-0.2
3,579,077	-				+0.2