Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16000

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,469,291	+		DZA65_RS15995	0.68	-1.3
3,469,291	+		DZA65_RS15995	0.68	-1.7
3,469,292	-		DZA65_RS15995	0.68	-0.3
3,469,292	-		DZA65_RS15995	0.68	-1.3
3,469,292	-		DZA65_RS15995	0.68	-0.8
3,469,292	-		DZA65_RS15995	0.68	-1.3
3,469,477	-		DZA65_RS15995	0.85	+0.3
3,469,489	+		DZA65_RS15995	0.86	+0.7
3,469,489	+		DZA65_RS15995	0.86	-1.6
3,469,490	-		DZA65_RS15995	0.86	-1.8
3,469,637	+				+1.3
3,469,638	-				-0.3
3,469,638	-				-0.4
3,469,638	-				-0.9
3,469,638	-				+1.1
3,469,638	-				-1.1
3,469,638	-				+0.9
3,469,641	+				+0.2
3,469,641	+				+0.5
3,469,641	+				-0.1
3,469,641	+				-0.8
3,469,642	-				+1.3
3,469,642	-				+1.9
3,469,642	-				-0.9
3,469,642	-				+0.2
3,469,642	-				-2.3
3,469,642	-				-1.4
3,469,676	-				-1.8
3,469,693	+				+0.8
3,469,703	+				+1.3
3,469,703	+				-1.7
3,469,704	-				+3.1
3,469,718	+				+0.6
3,469,719	-				+1.2
3,469,722	-				+0.4
3,469,741	+				+0.7
3,469,742	-				-0.7
3,469,760	-				-1.7
3,469,763	+				-0.6
3,469,763	+				+0.0
3,469,764	-				+1.2
3,469,764	-				-0.4
3,469,764	-				-1.4
3,469,877	+				-0.3
3,469,888	+				+0.1
3,469,888	+				-0.7
3,469,917	+				+0.5
3,469,917	+				-0.3
3,469,917	+				-0.6
3,469,918	-				-3.4
3,469,934	-				+0.6
3,470,034	+				-0.9
3,470,077	+				+0.7
3,470,077	+				-0.8
3,470,096	+				-2.1
3,470,097	-				+0.2
3,470,097	-				-0.6
3,470,098	+				-1.3
3,470,098	+				-0.3
3,470,098	+				+0.6
3,470,098	+				+0.0
3,470,099	-				+2.0
3,470,099	-				-0.1
3,470,099	-				-0.8
3,470,099	-				-0.8
3,470,099	-				-0.1
3,470,099	-				-0.5
3,470,099	-				-0.2
3,470,099	-				+1.3
3,470,100	+				-0.7
3,470,100	+				-0.3
3,470,101	-				+0.4
3,470,101	-				-0.3
3,470,101	-				-0.7
3,470,138	+				+1.5
3,470,139	-				+1.4
3,470,161	+				+0.5
3,470,162	-				+0.7
3,470,170	-				-0.3
3,470,192	-				+0.2
3,470,291	+				+1.7
3,470,292	-				-0.0
3,470,387	+		DZA65_RS16000	0.12	+0.3
3,470,388	-		DZA65_RS16000	0.12	+0.7
3,470,399	+				+0.7
3,470,400	-		DZA65_RS16000	0.13	+0.5
3,470,400	-		DZA65_RS16000	0.13	-0.3
3,470,418	+		DZA65_RS16000	0.15	-0.8
3,470,419	-		DZA65_RS16000	0.15	-0.6
3,470,438	-		DZA65_RS16000	0.16	-0.3
3,470,554	-		DZA65_RS16000	0.25	+1.1
3,470,606	+		DZA65_RS16000	0.29	-0.5
3,470,606	+				-0.3
3,470,607	-		DZA65_RS16000	0.29	+0.7
3,470,607	-		DZA65_RS16000	0.29	-2.3
3,470,626	+		DZA65_RS16000	0.31	-1.4
3,470,627	-		DZA65_RS16000	0.31	+1.1
3,470,682	-		DZA65_RS16000	0.35	-0.5
3,470,770	-		DZA65_RS16000	0.42	-0.3
3,470,773	+		DZA65_RS16000	0.42	-1.2
3,470,774	-		DZA65_RS16000	0.42	-0.4
3,470,804	+		DZA65_RS16000	0.45	+0.2
3,470,807	+		DZA65_RS16000	0.45	+0.3
3,470,808	-		DZA65_RS16000	0.45	-0.7
3,470,937	+		DZA65_RS16000	0.55	-1.4
3,470,938	-		DZA65_RS16000	0.55	-0.1
3,470,981	+		DZA65_RS16000	0.59	-1.8
3,470,982	-		DZA65_RS16000	0.59	-0.8
3,470,982	-		DZA65_RS16000	0.59	-1.1
3,470,982	-		DZA65_RS16000	0.59	-1.3
3,471,031	+		DZA65_RS16000	0.62	-0.8
3,471,031	+		DZA65_RS16000	0.62	-0.7
3,471,032	-		DZA65_RS16000	0.63	+0.3
3,471,093	+		DZA65_RS16000	0.67	-0.5
3,471,094	-		DZA65_RS16000	0.67	+1.7
3,471,184	-		DZA65_RS16000	0.74	-0.4
3,471,184	-		DZA65_RS16000	0.74	-2.6
3,471,396	+				-0.5
3,471,396	+				-0.1
3,471,397	-				+1.9
3,471,397	-				+0.0
3,471,397	-				-1.3
3,471,397	-				+0.7
3,471,429	+				-0.8
3,471,429	+				+0.7
3,471,429	+				-0.3
3,471,443	-				-1.3
3,471,443	-				-0.7
3,471,495	+				-1.3
3,471,496	-				-0.2
3,471,496	-				-2.1
3,471,510	+				-1.4
3,471,510	+				+0.4
3,471,511	-				+0.5
3,471,511	-				-1.3
3,471,574	+				-1.6
3,471,585	+				-0.8
3,471,585	+				+0.0
3,471,586	-				+2.3
3,471,593	-				-0.3
3,471,722	+		DZA65_RS16005	0.11	-1.3
3,471,757	+		DZA65_RS16005	0.13	-0.3
3,471,795	+		DZA65_RS16005	0.16	+0.9
3,471,832	+		DZA65_RS16005	0.19	+1.0
3,471,833	-		DZA65_RS16005	0.19	+1.1
3,471,993	-		DZA65_RS16005	0.30	-0.0
3,471,993	-		DZA65_RS16005	0.30	-0.6
3,471,993	-		DZA65_RS16005	0.30	+2.2
3,472,004	+		DZA65_RS16005	0.31	+0.4
3,472,004	+		DZA65_RS16005	0.31	+0.2
3,472,004	+		DZA65_RS16005	0.31	+0.9
3,472,004	+		DZA65_RS16005	0.31	+3.4
3,472,004	+		DZA65_RS16005	0.31	-0.3
3,472,005	-		DZA65_RS16005	0.31	+0.7
3,472,005	-		DZA65_RS16005	0.31	+0.2
3,472,005	-		DZA65_RS16005	0.31	-0.2
3,472,005	-		DZA65_RS16005	0.31	-2.1
3,472,005	-		DZA65_RS16005	0.31	+0.7
3,472,005	-		DZA65_RS16005	0.31	+1.0
3,472,005	-		DZA65_RS16005	0.31	+0.7
3,472,007	+		DZA65_RS16005	0.32	-0.6
3,472,007	+		DZA65_RS16005	0.32	-1.0
3,472,007	+		DZA65_RS16005	0.32	+0.5
3,472,008	-		DZA65_RS16005	0.32	-1.3
3,472,091	+		DZA65_RS16005	0.38	-0.5
3,472,091	+		DZA65_RS16005	0.38	+0.1
3,472,091	+		DZA65_RS16005	0.38	-1.1
3,472,092	-		DZA65_RS16005	0.38	+0.2
3,472,092	-		DZA65_RS16005	0.38	+0.5
3,472,092	-		DZA65_RS16005	0.38	+1.4
3,472,092	-		DZA65_RS16005	0.38	-0.3
3,472,199	+		DZA65_RS16005	0.46	-1.0
3,472,199	+		DZA65_RS16005	0.46	+0.3
3,472,200	-		DZA65_RS16005	0.46	-0.2
3,472,464	+		DZA65_RS16005	0.65	+1.7
3,472,472	+		DZA65_RS16005	0.65	+1.7
3,472,472	+		DZA65_RS16005	0.65	-0.4
3,472,472	+		DZA65_RS16005	0.65	+0.2
3,472,472	+		DZA65_RS16005	0.65	+1.7
3,472,472	+		DZA65_RS16005	0.65	-0.2
3,472,473	-		DZA65_RS16005	0.65	-1.7
3,472,473	-		DZA65_RS16005	0.65	-2.3
3,472,473	-		DZA65_RS16005	0.65	+1.6
3,472,473	-		DZA65_RS16005	0.65	-0.2
3,472,473	-		DZA65_RS16005	0.65	+0.3
3,472,473	-		DZA65_RS16005	0.65	+0.0
3,472,475	+		DZA65_RS16005	0.66	-0.1
3,472,475	+		DZA65_RS16005	0.66	-0.3
3,472,475	+		DZA65_RS16005	0.66	+0.7
3,472,475	+		DZA65_RS16005	0.66	+0.3
3,472,475	+		DZA65_RS16005	0.66	-0.5
3,472,475	+		DZA65_RS16005	0.66	+0.2
3,472,476	-		DZA65_RS16005	0.66	-0.3
3,472,476	-		DZA65_RS16005	0.66	-0.4
3,472,476	-		DZA65_RS16005	0.66	+0.4
3,472,476	-		DZA65_RS16005	0.66	-0.7
3,472,476	-		DZA65_RS16005	0.66	-1.0
3,472,476	-		DZA65_RS16005	0.66	+0.5